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Central Metabolism Is Tuned to the Availability of Oxygen in Developing Melon Fruit.

Mori K, Beauvoit BP, Biais B, Chabane M, Allwood JW, Deborde C, Maucourt M, Goodacre R, Cabasson C, Moing A, Rolin D, Gibon Y.

Front Plant Sci. 2019 May 15;10:594. doi: 10.3389/fpls.2019.00594. eCollection 2019.


Modeling protein destiny in developing fruit.

Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S.

Plant Physiol. 2019 Apr 23. pii: pp.00086.2019. doi: 10.1104/pp.19.00086. [Epub ahead of print]


Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers.

Fernandez O, Urrutia M, Berton T, Bernillon S, Deborde C, Jacob D, Maucourt M, Maury P, Duruflé H, Gibon Y, Langlade NB, Moing A.

Metabolomics. 2019 Mar 30;15(4):56. doi: 10.1007/s11306-019-1515-4.


Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding.

Lamari N, Zhendre V, Urrutia M, Bernillon S, Maucourt M, Deborde C, Prodhomme D, Jacob D, Ballias P, Rolin D, Sellier H, Rabier D, Gibon Y, Giauffret C, Moing A.

Metabolomics. 2018 Sep 26;14(10):132. doi: 10.1007/s11306-018-1427-8.


Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices.

Peltier E, Sharma V, Martí Raga M, Roncoroni M, Bernard M, Jiranek V, Gibon Y, Marullo P.

BMC Genomics. 2018 Nov 9;19(1):772. doi: 10.1186/s12864-018-5145-4.


Impacts of Paraburkholderia phytofirmans Strain PsJN on Tomato (Lycopersicon esculentum L.) Under High Temperature.

Issa A, Esmaeel Q, Sanchez L, Courteaux B, Guise JF, Gibon Y, Ballias P, Clément C, Jacquard C, Vaillant-Gaveau N, Aït Barka E.

Front Plant Sci. 2018 Oct 18;9:1397. doi: 10.3389/fpls.2018.01397. eCollection 2018.


Peptide filtering differently affects the performances of XIC-based quantification methods.

Belouah I, Blein-Nicolas M, Balliau T, Gibon Y, Zivy M, Colombié S.

J Proteomics. 2019 Feb 20;193:131-141. doi: 10.1016/j.jprot.2018.10.003. Epub 2018 Oct 10.


Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato.

Shinozaki Y, Ezura K, Hu J, Okabe Y, Bénard C, Prodhomme D, Gibon Y, Sun TP, Ezura H, Ariizumi T.

Sci Rep. 2018 Aug 13;8(1):12043. doi: 10.1038/s41598-018-30502-w.


Corrigendum to "Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination" [Plant Sci. 269 (2018) 118-125].

Xia Q, Ponnaiah M, Cueff G, Rajjou L, Prodhomme D, Gibon Y, Bailly C, Corbineau F, Meimoun P, El-Maarouf-Bouteau H.

Plant Sci. 2018 Sep;274:44. doi: 10.1016/j.plantsci.2018.05.002. Epub 2018 May 22. No abstract available.


Constraint-Based Modeling Highlights Cell Energy, Redox Status and α-Ketoglutarate Availability as Metabolic Drivers for Anthocyanin Accumulation in Grape Cells Under Nitrogen Limitation.

Soubeyrand E, Colombié S, Beauvoit B, Dai Z, Cluzet S, Hilbert G, Renaud C, Maneta-Peyret L, Dieuaide-Noubhani M, Mérillon JM, Gibon Y, Delrot S, Gomès E.

Front Plant Sci. 2018 May 17;9:421. doi: 10.3389/fpls.2018.00421. eCollection 2018.


Untargeted Analysis of Semipolar Compounds by LC-MS and Targeted Analysis of Fatty Acids by GC-MS/GC-FID: From Plant Cultivation to Extract Preparation.

Bénard C, Acket S, Rossez Y, Fernandez O, Berton T, Gibon Y, Cabasson C.

Methods Mol Biol. 2018;1778:101-124. doi: 10.1007/978-1-4939-7819-9_8.


Comparative metabolomics and glycolysis enzyme profiling of embryogenic and nonembryogenic grape cells.

Parrilla J, Gaillard C, Verbeke J, Maucourt M, Aleksandrov RA, Thibault F, Fleurat-Lessard P, Gibon Y, Rolin D, Atanassova R.

FEBS Open Bio. 2018 Apr 17;8(5):784-798. doi: 10.1002/2211-5463.12415. eCollection 2018 May.


1H-NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets.

Wedeking R, Maucourt M, Deborde C, Moing A, Gibon Y, Goldbach HE, Wimmer MA.

PLoS One. 2018 May 8;13(5):e0196102. doi: 10.1371/journal.pone.0196102. eCollection 2018.


Putting primary metabolism into perspective to obtain better fruits.

Beauvoit B, Belouah I, Bertin N, Cakpo CB, Colombié S, Dai Z, Gautier H, Génard M, Moing A, Roch L, Vercambre G, Gibon Y.

Ann Bot. 2018 Jun 28;122(1):1-21. doi: 10.1093/aob/mcy057.


Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination.

Xia Q, Ponnaiah M, Cueff G, Rajjou L, Prodhomme D, Gibon Y, Bailly C, Corbineau F, Meimoun P, El-Maarouf-Bouteau H.

Plant Sci. 2018 Apr;269:118-125. doi: 10.1016/j.plantsci.2018.01.014. Epub 2018 Feb 2. Erratum in: Plant Sci. 2018 Sep;274:44.


Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions.

Peltier E, Bernard M, Trujillo M, Prodhomme D, Barbe JC, Gibon Y, Marullo P.

PLoS One. 2018 Jan 19;13(1):e0190094. doi: 10.1371/journal.pone.0190094. eCollection 2018.


QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.).

Argyris JM, Díaz A, Ruggieri V, Fernández M, Jahrmann T, Gibon Y, Picó B, Martín-Hernández AM, Monforte AJ, Garcia-Mas J.

Front Plant Sci. 2017 Sep 26;8:1679. doi: 10.3389/fpls.2017.01679. eCollection 2017.


Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants.

Omena-Garcia RP, Araújo WL, Gibon Y, Fernie AR, Nunes-Nesi A.

Methods Mol Biol. 2017;1670:167-182. doi: 10.1007/978-1-4939-7292-0_14.


Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light.

Gimeno TE, Ogée J, Royles J, Gibon Y, West JB, Burlett R, Jones SP, Sauze J, Wohl S, Benard C, Genty B, Wingate L.

New Phytol. 2017 Aug;215(3):965-976. doi: 10.1111/nph.14584. Epub 2017 May 3.


Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.

Cañas RA, Yesbergenova-Cuny Z, Simons M, Chardon F, Armengaud P, Quilleré I, Cukier C, Gibon Y, Limami AM, Nicolas S, Brulé L, Lea PJ, Maranas CD, Hirel B.

Plant Cell. 2017 May;29(5):919-943. doi: 10.1105/tpc.16.00613. Epub 2017 Apr 10. Erratum in: Plant Cell. 2018 Apr;30(4):946.


Respiration climacteric in tomato fruits elucidated by constraint-based modelling.

Colombié S, Beauvoit B, Nazaret C, Bénard C, Vercambre G, Le Gall S, Biais B, Cabasson C, Maucourt M, Bernillon S, Moing A, Dieuaide-Noubhani M, Mazat JP, Gibon Y.

New Phytol. 2017 Mar;213(4):1726-1739. doi: 10.1111/nph.14301. Epub 2016 Nov 15.


Fortune telling: metabolic markers of plant performance.

Fernandez O, Urrutia M, Bernillon S, Giauffret C, Tardieu F, Le Gouis J, Langlade N, Charcosset A, Moing A, Gibon Y.

Metabolomics. 2016;12(10):158. Epub 2016 Sep 15. Review.


Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays.

Toubiana D, Xue W, Zhang N, Kremling K, Gur A, Pilosof S, Gibon Y, Stitt M, Buckler ES, Fernie AR, Fait A.

Front Plant Sci. 2016 Jul 12;7:1022. doi: 10.3389/fpls.2016.01022. eCollection 2016.


A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits.

Perpiñá G, Esteras C, Gibon Y, Monforte AJ, Picó B.

BMC Plant Biol. 2016 Jul 8;16(1):154. doi: 10.1186/s12870-016-0842-0.


Is Change in Ovary Carbon Status a Cause or a Consequence of Maize Ovary Abortion in Water Deficit during Flowering?

Oury V, Caldeira CF, Prodhomme D, Pichon JP, Gibon Y, Tardieu F, Turc O.

Plant Physiol. 2016 Jun;171(2):997-1008. doi: 10.1104/pp.15.01130. Epub 2016 Apr 19.


Measurement of Enzyme Activities and Optimization of Continuous and Discontinuous Assays.

Bénard C, Gibon Y.

Curr Protoc Plant Biol. 2016 Mar;1(2):247-262. doi: 10.1002/cppb.20003.


Bread Wheat (Triticum aestivum L.) Grain Protein Concentration Is Related to Early Post-Flowering Nitrate Uptake under Putative Control of Plant Satiety Level.

Taulemesse F, Le Gouis J, Gouache D, Gibon Y, Allard V.

PLoS One. 2016 Feb 17;11(2):e0149668. doi: 10.1371/journal.pone.0149668. eCollection 2016.


Short- and long-term effects of carbohydrate limitation on sugar and organic acid accumulation during mandarin fruit growth.

Antoine S, Pailly O, Gibon Y, Luro F, Santini J, Giannettini J, Berti L.

J Sci Food Agric. 2016 Aug;96(11):3906-14. doi: 10.1002/jsfa.7594. Epub 2016 Feb 8.


Non-structural carbohydrates in woody plants compared among laboratories.

Quentin AG, Pinkard EA, Ryan MG, Tissue DT, Baggett LS, Adams HD, Maillard P, Marchand J, Landhäusser SM, Lacointe A, Gibon Y, Anderegg WR, Asao S, Atkin OK, Bonhomme M, Claye C, Chow PS, Clément-Vidal A, Davies NW, Dickman LT, Dumbur R, Ellsworth DS, Falk K, Galiano L, Grünzweig JM, Hartmann H, Hoch G, Hood S, Jones JE, Koike T, Kuhlmann I, Lloret F, Maestro M, Mansfield SD, Martínez-Vilalta J, Maucourt M, McDowell NG, Moing A, Muller B, Nebauer SG, Niinemets Ü, Palacio S, Piper F, Raveh E, Richter A, Rolland G, Rosas T, Saint Joanis B, Sala A, Smith RA, Sterck F, Stinziano JR, Tobias M, Unda F, Watanabe M, Way DA, Weerasinghe LK, Wild B, Wiley E, Woodruff DR.

Tree Physiol. 2015 Nov;35(11):1146-65. doi: 10.1093/treephys/tpv073. Epub 2015 Sep 29.


Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties.

Saladié M, Cañizares J, Phillips MA, Rodriguez-Concepcion M, Larrigaudière C, Gibon Y, Stitt M, Lunn JE, Garcia-Mas J.

BMC Genomics. 2015 Jun 9;16:440. doi: 10.1186/s12864-015-1649-3.


Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping.

Rebolledo MC, Dingkuhn M, Courtois B, Gibon Y, Clément-Vidal A, Cruz DF, Duitama J, Lorieux M, Luquet D.

J Exp Bot. 2015 Sep;66(18):5555-66. doi: 10.1093/jxb/erv258. Epub 2015 May 28.


Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply.

Dai Z, Plessis A, Vincent J, Duchateau N, Besson A, Dardevet M, Prodhomme D, Gibon Y, Hilbert G, Pailloux M, Ravel C, Martre P.

Plant J. 2015 Jul;83(2):326-43. doi: 10.1111/tpj.12881. Epub 2015 Jun 8.


The intrinsically disordered protein LEA7 from Arabidopsis thaliana protects the isolated enzyme lactate dehydrogenase and enzymes in a soluble leaf proteome during freezing and drying.

Popova AV, Rausch S, Hundertmark M, Gibon Y, Hincha DK.

Biochim Biophys Acta. 2015 Oct;1854(10 Pt A):1517-25. doi: 10.1016/j.bbapap.2015.05.002. Epub 2015 May 16.


Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population.

Zhang N, Gibon Y, Wallace JG, Lepak N, Li P, Dedow L, Chen C, So YS, Kremling K, Bradbury PJ, Brutnell T, Stitt M, Buckler ES.

Plant Physiol. 2015 Jun;168(2):575-83. doi: 10.1104/pp.15.00025. Epub 2015 Apr 27.


Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.

Bénard C, Bernillon S, Biais B, Osorio S, Maucourt M, Ballias P, Deborde C, Colombié S, Cabasson C, Jacob D, Vercambre G, Gautier H, Rolin D, Génard M, Fernie AR, Gibon Y, Moing A.

J Exp Bot. 2015 Jun;66(11):3391-404. doi: 10.1093/jxb/erv151. Epub 2015 Apr 11.


Post-flowering nitrate uptake in wheat is controlled by N status at flowering, with a putative major role of root nitrate transporter NRT2.1.

Taulemesse F, Le Gouis J, Gouache D, Gibon Y, Allard V.

PLoS One. 2015 Mar 23;10(3):e0120291. doi: 10.1371/journal.pone.0120291. eCollection 2015.


Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype.

Khozaei M, Fisk S, Lawson T, Gibon Y, Sulpice R, Stitt M, Lefebvre SC, Raines CA.

Plant Cell. 2015 Feb;27(2):432-47. doi: 10.1105/tpc.114.131011. Epub 2015 Feb 10. Erratum in: Plant Cell. 2016 Jul;28(7):1752-4.


Association mapping across numerous traits reveals patterns of functional variation in maize.

Wallace JG, Bradbury PJ, Zhang N, Gibon Y, Stitt M, Buckler ES.

PLoS Genet. 2014 Dec 4;10(12):e1004845. doi: 10.1371/journal.pgen.1004845. eCollection 2014 Dec.


Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios.

Desnoues E, Gibon Y, Baldazzi V, Signoret V, Génard M, Quilot-Turion B.

BMC Plant Biol. 2014 Nov 25;14:336. doi: 10.1186/s12870-014-0336-x.


Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit.

Colombié S, Nazaret C, Bénard C, Biais B, Mengin V, Solé M, Fouillen L, Dieuaide-Noubhani M, Mazat JP, Beauvoit B, Gibon Y.

Plant J. 2015 Jan;81(1):24-39. doi: 10.1111/tpj.12685. Epub 2014 Nov 10.


Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis.

Recht L, Töpfer N, Batushansky A, Sikron N, Gibon Y, Fait A, Nikoloski Z, Boussiba S, Zarka A.

J Biol Chem. 2014 Oct 31;289(44):30387-403. doi: 10.1074/jbc.M114.555144. Epub 2014 Sep 2.


Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion.

Beauvoit BP, Colombié S, Monier A, Andrieu MH, Biais B, Bénard C, Chéniclet C, Dieuaide-Noubhani M, Nazaret C, Mazat JP, Gibon Y.

Plant Cell. 2014 Aug;26(8):3224-42. doi: 10.1105/tpc.114.127761. Epub 2014 Aug 19.


Ozone affects ascorbate and glutathione biosynthesis as well as amino acid contents in three Euramerican poplar genotypes.

Dumont J, Keski-Saari S, Keinänen M, Cohen D, Ningre N, Kontunen-Soppela S, Baldet P, Gibon Y, Dizengremel P, Vaultier MN, Jolivet Y, Oksanen E, Le Thiec D.

Tree Physiol. 2014 Mar;34(3):253-66. doi: 10.1093/treephys/tpu004.


Metabolic studies in plant organs: don't forget dilution by growth.

Génard M, Baldazzi V, Gibon Y.

Front Plant Sci. 2014 Mar 11;5:85. doi: 10.3389/fpls.2014.00085. eCollection 2014. No abstract available.


Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism.

Biais B, Bénard C, Beauvoit B, Colombié S, Prodhomme D, Ménard G, Bernillon S, Gehl B, Gautier H, Ballias P, Mazat JP, Sweetlove L, Génard M, Gibon Y.

Plant Physiol. 2014 Mar;164(3):1204-21. doi: 10.1104/pp.113.231241. Epub 2014 Jan 28.


Silencing of the tomato sugar partitioning affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism.

Bermúdez L, de Godoy F, Baldet P, Demarco D, Osorio S, Quadrana L, Almeida J, Asis R, Gibon Y, Fernie AR, Rossi M, Carrari F.

Plant J. 2014 Mar;77(5):676-87. doi: 10.1111/tpj.12418. Epub 2014 Feb 6.


Why bring post-genomics into the phosphorus-impoverished bush?

Gibon Y.

Plant Cell Environ. 2014 Jun;37(6):1273-5. doi: 10.1111/pce.12265. Epub 2014 Jan 28. No abstract available.


Why measure enzyme activities in the era of systems biology?

Stitt M, Gibon Y.

Trends Plant Sci. 2014 Apr;19(4):256-65. doi: 10.1016/j.tplants.2013.11.003. Epub 2013 Dec 11. Review.


Analysis of enzyme activities.

Ménard G, Biais B, Prodhomme D, Ballias P, Gibon Y.

Methods Mol Biol. 2014;1090:249-59. doi: 10.1007/978-1-62703-688-7_15.


Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach.

Pascual L, Xu J, Biais B, Maucourt M, Ballias P, Bernillon S, Deborde C, Jacob D, Desgroux A, Faurobert M, Bouchet JP, Gibon Y, Moing A, Causse M.

J Exp Bot. 2013 Dec;64(18):5737-52. doi: 10.1093/jxb/ert349. Epub 2013 Oct 22.

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