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Development of High-Level Echinocandin Resistance in a Patient With Recurrent Candida auris Candidemia Secondary to Chronic Candiduria.

Biagi MJ, Wiederhold NP, Gibas C, Wickes BL, Lozano V, Bleasdale SC, Danziger L.

Open Forum Infect Dis. 2019 Jun 1;6(7):ofz262. doi: 10.1093/ofid/ofz262. eCollection 2019 Jul.


Rasamsonia sp: An emerging infection amongst chronic granulomatous disease patients. A case of disseminated infection by a putatively novel Rasamsonia argillacea species complex involving the heart.

Babiker A, Gupta N, Gibas CFC, Wiederhold NP, Sanders C, Mele J, Fan H, Iovleva A, Haidar G, Fernandes C.

Med Mycol Case Rep. 2019 Apr 16;24:54-57. doi: 10.1016/j.mmcr.2019.04.002. eCollection 2019 Jun.


Gastrointestinal pythiosis with concurrent presumptive gastrointestinal basidiobolomycosis in a Boxer dog.

Parambeth JC, Lawhon SD, Mansell J, Wu J, Clark SD, Sutton D, Gibas C, Wiederhold NP, Myers AN, Johnson MC, Levine GJ, Schlemmer S, Ruoff C, Isaiah A, Creevy KE.

Vet Clin Pathol. 2019 Mar;48(1):83-88. doi: 10.1111/vcp.12720. Epub 2019 Mar 21.


From the Clinical Mycology Laboratory: New Species and Changes in Fungal Taxonomy and Nomenclature.

Wiederhold NP, Gibas CFC.

J Fungi (Basel). 2018 Dec 16;4(4). pii: E138. doi: 10.3390/jof4040138. Review.


Novel Paranannizziopsis species in a Wagler's viper (Tropidolaemus wagleri), tentacled snakes (Erpeton tentaculatum), and a rhinoceros snake (Rhynchophis boulengeri) in a zoological collection.

Rainwater KL, Wiederhold NP, Sutton DA, Garner MM, Maguire C, Sanders C, Gibas C, Cano JF, Guarro J, Stchigel AM.

Med Mycol. 2018 Dec 6. doi: 10.1093/mmy/myy134. [Epub ahead of print]


In Vitro Activity of Isavuconazole against Opportunistic Fungal Pathogens from Two Mycology Reference Laboratories.

Pfaller MA, Rhomberg PR, Wiederhold NP, Gibas C, Sanders C, Fan H, Mele J, Kovanda LL, Castanheira M.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e01230-18. doi: 10.1128/AAC.01230-18. Print 2018 Oct.


Invasive Rhinosinusitis Caused by Lasiodiplodia theobromae in an Allogeneic Hematopoietic Cell Transplant Recipient Case Report and Review of Literature.

Rodriguez A, Anjan S, Martinez OV, Lekakis LJ, Beitinjaneh A, Camargo JF, Gibas CFC, Sanders CJ, Wiederhold NP, Abbo LM.

Mycopathologia. 2018 Oct;183(5):841-845. doi: 10.1007/s11046-018-0262-9. Epub 2018 Jun 22. Review.


Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy.

Roig FJ, González-Candelas F, Sanjuán E, Fouz B, Feil EJ, Llorens C, Baker-Austin C, Oliver JD, Danin-Poleg Y, Gibas CJ, Kashi Y, Gulig PA, Morrison SS, Amaro C.

Front Microbiol. 2018 Jan 5;8:2613. doi: 10.3389/fmicb.2017.02613. eCollection 2017.


Multicenter Evaluation of the Vitek MS v3.0 System for the Identification of Filamentous Fungi.

Rychert J, Slechta ES, Barker AP, Miranda E, Babady NE, Tang YW, Gibas C, Wiederhold N, Sutton D, Hanson KE.

J Clin Microbiol. 2018 Jan 24;56(2). pii: e01353-17. doi: 10.1128/JCM.01353-17. Print 2018 Feb.


The quantitative impact of read mapping to non-native reference genomes in comparative RNA-Seq studies.

Price A, Gibas C.

PLoS One. 2017 Jul 11;12(7):e0180904. doi: 10.1371/journal.pone.0180904. eCollection 2017.


The impact of RNA secondary structure on read start locations on the Illumina sequencing platform.

Price A, Garhyan J, Gibas C.

PLoS One. 2017 Feb 28;12(2):e0173023. doi: 10.1371/journal.pone.0173023. eCollection 2017.


Comparative Genomic Analysis of Two Vibrio toranzoniae Strains with Different Virulence Capacity Reveals Clues on Its Pathogenicity for Fish.

Lasa A, Gibas CJ, Romalde JL.

Front Microbiol. 2017 Jan 30;8:86. doi: 10.3389/fmicb.2017.00086. eCollection 2017.


Simulome: a genome sequence and variant simulator.

Price A, Gibas C.

Bioinformatics. 2017 Feb 10. doi: 10.1093/bioinformatics/btx091. [Epub ahead of print] No abstract available.


Draft Genome Sequence of Vibrio toranzoniae Strain CECT 7225T.

Lasa A, Gibas CJ, Romalde JL.

Genome Announc. 2016 Mar 31;4(2). pii: e00212-16. doi: 10.1128/genomeA.00212-16.


First Human Case of Fungal Keratitis Caused by a Putatively Novel Species of Lophotrichus.

Eghrari AO, Gibas C, Watkins T, Vahedi S, Lee R, Houle E, Suarez MJ, Eberhart C, Sutton DA, Wiederhold NP, Sikder S, Zhang SX.

J Clin Microbiol. 2015 Sep;53(9):3063-7. doi: 10.1128/JCM.00471-15. Epub 2015 Jun 24.


Transcriptome sequencing reveals the virulence and environmental genetic programs of Vibrio vulnificus exposed to host and estuarine conditions.

Williams TC, Blackman ER, Morrison SS, Gibas CJ, Oliver JD.

PLoS One. 2014 Dec 9;9(12):e114376. doi: 10.1371/journal.pone.0114376. eCollection 2014.


Impact of analytic provenance in genome analysis.

Morrison SS, Pyzh R, Jeon MS, Amaro C, Roig FJ, Baker-Austin C, Oliver JD, Gibas CJ.

BMC Genomics. 2014;15 Suppl 8:S1. doi: 10.1186/1471-2164-15-S8-S1. Epub 2014 Nov 13.


Guest editors' introduction to the Proceedings of the 9th International Symposium on Biomedical Research and Applications.

Gibas CJ, Cai Z, Eulenstein O.

BMC Bioinformatics. 2014;15 Suppl 13:S1. doi: 10.1186/1471-2105-15-S13-S1. Epub 2014 Nov 13. No abstract available.


First report of Westerdykella dispersa as a cause of an angioinvasive fungal infection in a neutropenic host.

Sue PK, Gurda GT, Lee R, Watkins T, Green R, Memon W, Milstone AM, Zelazny AM, Fahle GA, Pham TA, Gibas CF, Sutton DA, Wickes BL, Wiederhold NP, Zhang SX.

J Clin Microbiol. 2014 Dec;52(12):4407-11. doi: 10.1128/JCM.02012-14. Epub 2014 Sep 17.


Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications.

Cai Z, Eulenstein O, Gibas C.

IEEE/ACM Trans Comput Biol Bioinform. 2014 May-Jun;11(3):453-4. No abstract available.


The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization.

Garhyan J, Gharaibeh RZ, McGee S, Gibas CJ.

BMC Res Notes. 2013 Feb 27;6:72. doi: 10.1186/1756-0500-6-72.


Invasive sino-orbital mycosis in an aplastic anemia patient caused by Neosartorya laciniosa.

Malejczyk K, Sigler L, Gibas CF, Smith SW.

J Clin Microbiol. 2013 Apr;51(4):1316-9. doi: 10.1128/JCM.02919-12. Epub 2013 Jan 23.


Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.

Harrison A, Binder H, Buhot A, Burden CJ, Carlon E, Gibas C, Gamble LJ, Halperin A, Hooyberghs J, Kreil DP, Levicky R, Noble PA, Ott A, Pettitt BM, Tautz D, Pozhitkov AE.

Nucleic Acids Res. 2013 Mar 1;41(5):2779-96. doi: 10.1093/nar/gks1358. Epub 2013 Jan 9. Review.


GenoSets: visual analytic methods for comparative genomics.

Cain AA, Kosara R, Gibas CJ.

PLoS One. 2012;7(10):e46401. doi: 10.1371/journal.pone.0046401. Epub 2012 Oct 3.


Pyrosequencing-based comparative genome analysis of Vibrio vulnificus environmental isolates.

Morrison SS, Williams T, Cain A, Froelich B, Taylor C, Baker-Austin C, Verner-Jeffreys D, Hartnell R, Oliver JD, Gibas CJ.

PLoS One. 2012;7(5):e37553. doi: 10.1371/journal.pone.0037553. Epub 2012 May 25.


Invasive Myceliophthora thermophila infection mimicking invasive aspergillosis in a neutropenic patient: a new cause of cross-reactivity with the Aspergillus galactomannan serum antigen assay.

Morio F, Fraissinet F, Gastinne T, Le Pape P, Delaunay J, Sigler L, Gibas CF, Miegeville M.

Med Mycol. 2011 Nov;49(8):883-6. doi: 10.3109/13693786.2011.584218. Epub 2011 May 30.


Accurate estimates of microarray target concentration from a simple sequence-independent Langmuir model.

Gharaibeh RZ, Fodor AA, Gibas CJ.

PLoS One. 2010 Dec 30;5(12):e14464. doi: 10.1371/journal.pone.0014464.


Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.

Zahn LM, Ma X, Altman NS, Zhang Q, Wall PK, Tian D, Gibas CJ, Gharaibeh R, Leebens-Mack JH, Depamphilis CW, Ma H.

Genome Biol. 2010;11(10):R101. doi: 10.1186/gb-2010-11-10-r101. Epub 2010 Oct 15.


Xylogone ganodermophthora sp. nov., an ascomycetous pathogen causing yellow rot on cultivated mushroom Ganoderma lucidum in Korea.

Kang HJ, Sigler L, Lee J, Gibas CF, Yun SH, Lee YW.

Mycologia. 2010 Sep-Oct;102(5):1167-84. doi: 10.3852/09-304.


Disseminated mycosis in veiled chameleons (Chamaeleo calyptratus) caused by Chamaeleomyces granulomatis, a new fungus related to Paecilomyces viridis.

Sigler L, Gibas CF, Kokotovic B, Bertelsen MF.

J Clin Microbiol. 2010 Sep;48(9):3182-92. doi: 10.1128/JCM.01079-10. Epub 2010 Jul 21.


Application of equilibrium models of solution hybridization to microarray design and analysis.

Gharaibeh RZ, Newton JM, Weller JW, Gibas CJ.

PLoS One. 2010 Jun 10;5(6):e11048. doi: 10.1371/journal.pone.0011048.


Phialosimplex, a new anamorphic genus associated with infections in dogs and having phylogenetic affinity to the Trichocomaceae.

Sigler L, Sutton DA, Gibas CF, Summerbell RC, Noel RK, Iwen PC.

Med Mycol. 2010 Mar;48(2):335-45. doi: 10.3109/13693780903225805.


Phialocephala urceolata, sp. nov., from a commercial, water-soluble heparin solution.

Wang W, McGhee D, Gibas CF, Tsuneda A, Currah RS.

Mycologia. 2009 Jan-Feb;101(1):136-41.


Background correction using dinucleotide affinities improves the performance of GCRMA.

Gharaibeh RZ, Fodor AA, Gibas CJ.

BMC Bioinformatics. 2008 Oct 23;9:452. doi: 10.1186/1471-2105-9-452.


Identification of a new species, Candida subhashii, as a cause of peritonitis.

Adam H, Groenewald M, Mohan S, Richardson S, Bunn U, Gibas CF, Poutanen S, Sigler L.

Med Mycol. 2009 May;47(3):305-11. doi: 10.1080/13693780802380545. Epub 2008 Sep 16.


Ascoma development and phylogeny of an apothecioid dothideomycete, Catinella olivacea.

Greif MD, Gibas CF, Tsuneda A, Currah RS.

Am J Bot. 2007 Nov;94(11):1890-9. doi: 10.3732/ajb.94.11.1890.


Software note: using probe secondary structure information to enhance Affymetrix GeneChip background estimates.

Gharaibeh RZ, Fodor AA, Gibas CJ.

Comput Biol Chem. 2007 Apr;31(2):92-8. Epub 2007 Feb 20.


Graphium basitruncatum fungemia in a patient with acute leukemia.

Kumar D, Sigler L, Gibas CF, Mohan S, Schuh A, Medeiros BC, Peckham K, Humar A.

J Clin Microbiol. 2007 May;45(5):1644-7. Epub 2007 Feb 21.


Molecular targets for rapid identification of Brucella spp.

Ratushna VG, Sturgill DM, Ramamoorthy S, Reichow SA, He Y, Lathigra R, Sriranganathan N, Halling SM, Boyle SM, Gibas CJ.

BMC Microbiol. 2006 Feb 22;6:13.


Peritonitis due to Curvularia inaequalis in an elderly patient undergoing peritoneal dialysis and a review of six cases of peritonitis associated with other Curvularia spp.

Pimentel JD, Mahadevan K, Woodgyer A, Sigler L, Gibas C, Harris OC, Lupino M, Athan E.

J Clin Microbiol. 2005 Aug;43(8):4288-92. Review.


Interactive gene-order comparison for multiple small genomes.

Kaluszka A, Gibas C.

Bioinformatics. 2004 Dec 12;20(18):3662-4. Epub 2004 Jul 15.


Arachnomyces kanei (anamorph Onychocola kanei) sp. nov., from human nails.

Gibas CF, Sigler L, Summerbell RC, Hofstader SL, Gupta AK.

Med Mycol. 2002 Dec;40(6):573-80.


Role of an electrostatic network of residues in the enzymatic action of the Rhizomucor miehei lipase family.

Herrgård S, Gibas CJ, Subramaniam S.

Biochemistry. 2000 Mar 21;39(11):2921-30.


Continuum electrostatic methods applied to pH-dependent properties of antibody-antigen association.

Gibas CJ, Jambeck P, Subramaniam S.

Methods. 2000 Mar;20(3):292-309. Review.


Knowledge-based design of a soluble bacteriorhodopsin.

Gibas C, Subramaniam S.

Protein Eng. 1997 Oct;10(10):1175-90.


pH dependence of antibody/lysozyme complexation.

Gibas CJ, Subramaniam S, McCammon JA, Braden BC, Poljak RJ.

Biochemistry. 1997 Dec 16;36(50):15599-614.


Explicit solvent models in protein pKa calculations.

Gibas CJ, Subramaniam S.

Biophys J. 1996 Jul;71(1):138-47.

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