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Items: 1 to 50 of 86

1.

Target of Rapamycin Inhibition in Chlamydomonas reinhardtii Triggers de Novo Amino Acid Synthesis by Enhancing Nitrogen Assimilation.

Mubeen U, Jüppner J, Alpers J, Hincha DK, Giavalisco P.

Plant Cell. 2018 Oct;30(10):2240-2254. doi: 10.1105/tpc.18.00159. Epub 2018 Sep 18.

2.

Unraveling local tissue changes within severely injured skeletal muscles in response to MSC-based intervention using MALDI Imaging mass spectrometry.

Klein O, Strohschein K, Nebrich G, Fuchs M, Thiele H, Giavalisco P, Duda GN, Winkler T, Kobarg JH, Trede D, Geissler S.

Sci Rep. 2018 Aug 23;8(1):12677. doi: 10.1038/s41598-018-30990-w.

3.

Lipidome alterations in human prefrontal cortex during development, aging, and cognitive disorders.

Yu Q, He Z, Zubkov D, Huang S, Kurochkin I, Yang X, Halene T, Willmitzer L, Giavalisco P, Akbarian S, Khaitovich P.

Mol Psychiatry. 2018 Aug 8. doi: 10.1038/s41380-018-0200-8. [Epub ahead of print]

PMID:
30089790
4.

Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation.

Zhang Y, Zhang Y, McFarlane HE, Obata T, Richter AS, Lohse M, Grimm B, Persson S, Fernie AR, Giavalisco P.

Plant Physiol. 2018 Sep;178(1):101-117. doi: 10.1104/pp.18.00684. Epub 2018 Jul 26.

5.

Lipidome Evolution in Mammalian Tissues.

Khrameeva E, Kurochkin I, Bozek K, Giavalisco P, Khaitovich P.

Mol Biol Evol. 2018 Aug 1;35(8):1947-1957. doi: 10.1093/molbev/msy097.

6.

Semi-targeted Lipidomics of Plant Acyl Lipids Using UPLC-HR-MS in Combination with a Data-Independent Acquisition Mode.

Salem MA, Giavalisco P.

Methods Mol Biol. 2018;1778:137-155. doi: 10.1007/978-1-4939-7819-9_10.

PMID:
29761436
7.

Imaging Mass Spectrometry for Characterization of Atrial Fibrillation Subtypes.

Klein O, Hanke T, Nebrich G, Yan J, Schubert B, Giavalisco P, Noack F, Thiele H, Mohamed SA.

Proteomics Clin Appl. 2018 May 13:e1700155. doi: 10.1002/prca.201700155. [Epub ahead of print]

PMID:
29754423
8.

RAPTOR Controls Developmental Growth Transitions by Altering the Hormonal and Metabolic Balance.

Salem MA, Li Y, Bajdzienko K, Fisahn J, Watanabe M, Hoefgen R, Schöttler MA, Giavalisco P.

Plant Physiol. 2018 Jun;177(2):565-593. doi: 10.1104/pp.17.01711. Epub 2018 Apr 23.

9.

Comparative Metabolomics Approach Detects Stress-Specific Responses during Coral Bleaching in Soft Corals.

Farag MA, Meyer A, Ali SE, Salem MA, Giavalisco P, Westphal H, Wessjohann LA.

J Proteome Res. 2018 Jun 1;17(6):2060-2071. doi: 10.1021/acs.jproteome.7b00929. Epub 2018 Apr 27.

PMID:
29671321
10.

Comprehensive Metabolomics Studies of Plant Developmental Senescence.

Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Methods Mol Biol. 2018;1744:339-358. doi: 10.1007/978-1-4939-7672-0_28.

PMID:
29392679
11.

The target of rapamycin kinase affects biomass accumulation and cell cycle progression by altering carbon/nitrogen balance in synchronized Chlamydomonas reinhardtii cells.

Jüppner J, Mubeen U, Leisse A, Caldana C, Wiszniewski A, Steinhauser D, Giavalisco P.

Plant J. 2018 Jan;93(2):355-376. doi: 10.1111/tpj.13787. Epub 2017 Dec 25.

PMID:
29172247
12.

Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana.

Alhajturki D, Muralidharan S, Nurmi M, Rowan BA, Lunn JE, Boldt H, Salem MA, Alseekh S, Jorzig C, Feil R, Giavalisco P, Fernie AR, Weigel D, Laitinen RAE.

New Phytol. 2018 Jan;217(1):392-406. doi: 10.1111/nph.14781. Epub 2017 Sep 14.

PMID:
28906562
13.
14.

Dynamics of lipids and metabolites during the cell cycle of Chlamydomonas reinhardtii.

Jüppner J, Mubeen U, Leisse A, Caldana C, Brust H, Steup M, Herrmann M, Steinhauser D, Giavalisco P.

Plant J. 2017 Oct;92(2):331-343. doi: 10.1111/tpj.13642. Epub 2017 Sep 8.

15.

Alzheimer's brains show inter-related changes in RNA and lipid metabolism.

Barbash S, Garfinkel BP, Maoz R, Simchovitz A, Nadorp B, Guffanti A, Bennett ER, Nadeau C, Türk A, Paul L, Reda T, Li Y, Buchman AS, Greenberg DS, Seitz A, Bennett DA, Giavalisco P, Soreq H.

Neurobiol Dis. 2017 Oct;106:1-13. doi: 10.1016/j.nbd.2017.06.008. Epub 2017 Jun 17.

16.

A Simple Fractionated Extraction Method for the Comprehensive Analysis of Metabolites, Lipids, and Proteins from a Single Sample.

Salem M, Bernach M, Bajdzienko K, Giavalisco P.

J Vis Exp. 2017 Jun 1;(124). doi: 10.3791/55802.

17.

Bioinformatic and expression analysis of the Brassica napus L. cyclophilins.

Hanhart P, Thieß M, Amari K, Bajdzienko K, Giavalisco P, Heinlein M, Kehr J.

Sci Rep. 2017 May 4;7(1):1514. doi: 10.1038/s41598-017-01596-5.

18.

Changes in Lipidome Composition during Brain Development in Humans, Chimpanzees, and Macaque Monkeys.

Li Q, Bozek K, Xu C, Guo Y, Sun J, Pääbo S, Sherwood CC, Hof PR, Ely JJ, Li Y, Willmitzer L, Giavalisco P, Khaitovich P.

Mol Biol Evol. 2017 May 1;34(5):1155-1166. doi: 10.1093/molbev/msx065.

19.

Lipidome determinants of maximal lifespan in mammals.

Bozek K, Khrameeva EE, Reznick J, Omerbašić D, Bennett NC, Lewin GR, Azpurua J, Gorbunova V, Seluanov A, Regnard P, Wanert F, Marchal J, Pifferi F, Aujard F, Liu Z, Shi P, Pääbo S, Schroeder F, Willmitzer L, Giavalisco P, Khaitovich P.

Sci Rep. 2017 Jan 31;7(1):5. doi: 10.1038/s41598-017-00037-7.

20.

Functional analysis of Brassica napus phloem protein and ribonucleoprotein complexes.

Ostendorp A, Pahlow S, Krüßel L, Hanhart P, Garbe MY, Deke J, Giavalisco P, Kehr J.

New Phytol. 2017 May;214(3):1188-1197. doi: 10.1111/nph.14405. Epub 2017 Jan 4.

22.

Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana.

Świadek M, Proost S, Sieh D, Yu J, Todesco M, Jorzig C, Rodriguez Cubillos AE, Plötner B, Nikoloski Z, Chae E, Giavalisco P, Fischer A, Schröder F, Kim ST, Weigel D, Laitinen RA.

New Phytol. 2017 Jan;213(2):900-915. doi: 10.1111/nph.14155. Epub 2016 Sep 2.

23.

A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis.

Li Z, Omranian N, Neumetzler L, Wang T, Herter T, Usadel B, Demura T, Giavalisco P, Nikoloski Z, Persson S.

Plant Physiol. 2016 Oct;172(2):1334-1351. Epub 2016 Aug 26.

24.

Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening.

Vallarino JG, Osorio S, Bombarely A, Casañal A, Cruz-Rus E, Sánchez-Sevilla JF, Amaya I, Giavalisco P, Fernie AR, Botella MA, Valpuesta V.

New Phytol. 2015 Oct;208(2):482-96. doi: 10.1111/nph.13463. Epub 2015 May 22.

25.

Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato.

Alseekh S, Tohge T, Wendenberg R, Scossa F, Omranian N, Li J, Kleessen S, Giavalisco P, Pleban T, Mueller-Roeber B, Zamir D, Nikoloski Z, Fernie AR.

Plant Cell. 2015 Mar;27(3):485-512. doi: 10.1105/tpc.114.132266. Epub 2015 Mar 13.

26.

Organization and evolution of brain lipidome revealed by large-scale analysis of human, chimpanzee, macaque, and mouse tissues.

Bozek K, Wei Y, Yan Z, Liu X, Xiong J, Sugimoto M, Tomita M, Pääbo S, Sherwood CC, Hof PR, Ely JJ, Li Y, Steinhauser D, Willmitzer L, Giavalisco P, Khaitovich P.

Neuron. 2015 Feb 18;85(4):695-702. doi: 10.1016/j.neuron.2015.01.003. Epub 2015 Feb 5.

27.

Global analysis of the role of autophagy in cellular metabolism and energy homeostasis in Arabidopsis seedlings under carbon starvation.

Avin-Wittenberg T, Bajdzienko K, Wittenberg G, Alseekh S, Tohge T, Bock R, Giavalisco P, Fernie AR.

Plant Cell. 2015 Feb;27(2):306-22. doi: 10.1105/tpc.114.134205. Epub 2015 Feb 3.

28.

FAX1, a novel membrane protein mediating plastid fatty acid export.

Li N, Gügel IL, Giavalisco P, Zeisler V, Schreiber L, Soll J, Philippar K.

PLoS Biol. 2015 Feb 3;13(2):e1002053. doi: 10.1371/journal.pbio.1002053. eCollection 2015 Feb.

29.

Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment.

Kleessen S, Irgang S, Klie S, Giavalisco P, Nikoloski Z.

Plant J. 2015 Mar;81(5):822-35. doi: 10.1111/tpj.12763.

30.

Liquid chromatography high-resolution mass spectrometry for fatty acid profiling.

Bromke MA, Hochmuth A, Tohge T, Fernie AR, Giavalisco P, Burgos A, Willmitzer L, Brotman Y.

Plant J. 2015 Feb;81(3):529-36. doi: 10.1111/tpj.12739. Epub 2015 Jan 5.

31.

Systems-wide analysis of acclimation responses to long-term heat stress and recovery in the photosynthetic model organism Chlamydomonas reinhardtii.

Hemme D, Veyel D, Mühlhaus T, Sommer F, Jüppner J, Unger AK, Sandmann M, Fehrle I, Schönfelder S, Steup M, Geimer S, Kopka J, Giavalisco P, Schroda M.

Plant Cell. 2014 Nov;26(11):4270-97. doi: 10.1105/tpc.114.130997. Epub 2014 Nov 18.

32.

Consequences of induced brassinosteroid deficiency in Arabidopsis leaves.

Schröder F, Lisso J, Obata T, Erban A, Maximova E, Giavalisco P, Kopka J, Fernie AR, Willmitzer L, Müssig C.

BMC Plant Biol. 2014 Nov 18;14:309. doi: 10.1186/s12870-014-0309-0.

33.

Lipid biosynthesis and protein concentration respond uniquely to phosphate supply during leaf development in highly phosphorus-efficient Hakea prostrata.

Kuppusamy T, Giavalisco P, Arvidsson S, Sulpice R, Stitt M, Finnegan PM, Scheible WR, Lambers H, Jost R.

Plant Physiol. 2014 Dec;166(4):1891-911. doi: 10.1104/pp.114.248930. Epub 2014 Oct 14.

34.

Sulphate fertilization ameliorates long-term aluminum toxicity symptoms in perennial ryegrass (Lolium perenne).

Wulff-Zottele C, Hesse H, Fisahn J, Bromke M, Vera-Villalobos H, Li Y, Frenzel F, Giavalisco P, Ribera-Fonseca A, Zunino L, Caruso I, Stohmann E, Mora Mde L.

Plant Physiol Biochem. 2014 Oct;83:88-99. doi: 10.1016/j.plaphy.2014.07.017. Epub 2014 Jul 30.

PMID:
25123423
35.

MALDI imaging mass spectrometry: discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures.

Klein O, Strohschein K, Nebrich G, Oetjen J, Trede D, Thiele H, Alexandrov T, Giavalisco P, Duda GN, von Roth P, Geissler S, Klose J, Winkler T.

Proteomics. 2014 Oct;14(20):2249-60. doi: 10.1002/pmic.201400088. Epub 2014 Aug 21. Erratum in: Proteomics. 2014 Nov;14(21-22):2630.

PMID:
25056804
36.

Uric acid accumulation in an Arabidopsis urate oxidase mutant impairs seedling establishment by blocking peroxisome maintenance.

Hauck OK, Scharnberg J, Escobar NM, Wanner G, Giavalisco P, Witte CP.

Plant Cell. 2014 Jul;26(7):3090-100. doi: 10.1105/tpc.114.124008. Epub 2014 Jul 22.

37.

Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species.

Sulpice R, Ishihara H, Schlereth A, Cawthray GR, Encke B, Giavalisco P, Ivakov A, Arrivault S, Jost R, Krohn N, Kuo J, Laliberté E, Pearse SJ, Raven JA, Scheible WR, Teste F, Veneklaas EJ, Stitt M, Lambers H.

Plant Cell Environ. 2014 Jun;37(6):1276-98.

38.

Exceptional evolutionary divergence of human muscle and brain metabolomes parallels human cognitive and physical uniqueness.

Bozek K, Wei Y, Yan Z, Liu X, Xiong J, Sugimoto M, Tomita M, Pääbo S, Pieszek R, Sherwood CC, Hof PR, Ely JJ, Steinhauser D, Willmitzer L, Bangsbo J, Hansson O, Call J, Giavalisco P, Khaitovich P.

PLoS Biol. 2014 May 27;12(5):e1001871. doi: 10.1371/journal.pbio.1001871. eCollection 2014 May.

39.

Diacylglycerol activates the light-dependent channel TRP in the photosensitive microvilli of Drosophila melanogaster photoreceptors.

Delgado R, Muñoz Y, Peña-Cortés H, Giavalisco P, Bacigalupo J.

J Neurosci. 2014 May 7;34(19):6679-86. doi: 10.1523/JNEUROSCI.0513-14.2014.

40.

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans.

Khrameeva EE, Bozek K, He L, Yan Z, Jiang X, Wei Y, Tang K, Gelfand MS, Prufer K, Kelso J, Paabo S, Giavalisco P, Lachmann M, Khaitovich P.

Nat Commun. 2014 Apr 1;5:3584. doi: 10.1038/ncomms4584.

41.

The sucrose-trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P.

Yadav UP, Ivakov A, Feil R, Duan GY, Walther D, Giavalisco P, Piques M, Carillo P, Hubberten HM, Stitt M, Lunn JE.

J Exp Bot. 2014 Mar;65(4):1051-68. doi: 10.1093/jxb/ert457. Epub 2014 Jan 13.

42.

Arabidopsis poly(A) polymerase PAPS1 limits founder-cell recruitment to organ primordia and suppresses the salicylic acid-independent immune response downstream of EDS1/PAD4.

Trost G, Vi SL, Czesnick H, Lange P, Holton N, Giavalisco P, Zipfel C, Kappel C, Lenhard M.

Plant J. 2014 Mar;77(5):688-99. doi: 10.1111/tpj.12421. Epub 2014 Feb 4.

43.

Analysis of subcellular metabolite distributions within Arabidopsis thaliana leaf tissue: a primer for subcellular metabolomics.

Krueger S, Steinhauser D, Lisec J, Giavalisco P.

Methods Mol Biol. 2014;1062:575-96. doi: 10.1007/978-1-62703-580-4_30.

PMID:
24057387
44.

Metabolic analysis of adaptation to short-term changes in culture conditions of the marine diatom Thalassiosira pseudonana.

Bromke MA, Giavalisco P, Willmitzer L, Hesse H.

PLoS One. 2013 Jun 14;8(6):e67340. doi: 10.1371/journal.pone.0067340. Print 2013.

45.

Differential regulation of carbon partitioning by the central growth regulator target of rapamycin (TOR).

Zhang Y, Persson S, Giavalisco P.

Mol Plant. 2013 Nov;6(6):1731-3. doi: 10.1093/mp/sst094. Epub 2013 Jun 12. No abstract available.

46.

Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis.

Watanabe M, Balazadeh S, Tohge T, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R.

Plant Physiol. 2013 Jul;162(3):1290-310. doi: 10.1104/pp.113.217380. Epub 2013 May 21.

47.

Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation.

Gray JW, Nelson Dittrich AC, Chen S, Avila J, Giavalisco P, Devarenne TP.

Biochim Biophys Acta. 2013 Jun;1834(6):1099-106. doi: 10.1016/j.bbapap.2013.03.006. Epub 2013 Mar 16.

48.

Long-distance signaling in bypass1 mutants: bioassay development reveals the bps signal to be a metabolite.

Adhikari E, Lee DK, Giavalisco P, Sieburth LE.

Mol Plant. 2013 Jan;6(1):164-73. doi: 10.1093/mp/sss129.

49.

Analysis of the interface between primary and secondary metabolism in catharanthus roseus cell cultures using (13)C-stable isotope feeding and coupled mass spectrometry.

Antonio C, Mustafa NR, Osorio S, Tohge T, Giavalisco P, Willmitzer L, Rischer H, Oksman-Caldentey KM, Verpoorte R, Fernie AR.

Mol Plant. 2013 Mar;6(2):581-4. doi: 10.1093/mp/sss156. Epub 2012 Dec 19. No abstract available.

50.

Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth in Arabidopsis thaliana.

Caldana C, Li Y, Leisse A, Zhang Y, Bartholomaeus L, Fernie AR, Willmitzer L, Giavalisco P.

Plant J. 2013 Mar;73(6):897-909. doi: 10.1111/tpj.12080. Epub 2013 Jan 22.

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