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Items: 17

1.

Publisher Correction: Shared strategies for β-lactam catabolism in the soil microbiome.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Nat Chem Biol. 2019 Feb;15(2):206. doi: 10.1038/s41589-018-0208-z.

PMID:
30591731
2.

Shared strategies for β-lactam catabolism in the soil microbiome.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Nat Chem Biol. 2018 Jun;14(6):556-564. doi: 10.1038/s41589-018-0052-1. Epub 2018 Apr 30. Erratum in: Nat Chem Biol. 2019 Feb;15(2):206.

3.

Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Genome Announc. 2017 Aug 10;5(32). pii: e00653-17. doi: 10.1128/genomeA.00653-17.

4.

Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides.

Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, Sismour AM, Kodira C, Egholm M, Church GM, Gerstein MB, Strobel SA.

PLoS Genet. 2012;8(3):e1002558. doi: 10.1371/journal.pgen.1002558. Epub 2012 Mar 1.

5.

Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.

Isaacs FJ, Carr PA, Wang HH, Lajoie MJ, Sterling B, Kraal L, Tolonen AC, Gianoulis TA, Goodman DB, Reppas NB, Emig CJ, Bang D, Hwang SJ, Jewett MC, Jacobson JM, Church GM.

Science. 2011 Jul 15;333(6040):348-53. doi: 10.1126/science.1205822.

6.

Regulatory variation within and between species.

Zheng W, Gianoulis TA, Karczewski KJ, Zhao H, Snyder M.

Annu Rev Genomics Hum Genet. 2011;12:327-46. doi: 10.1146/annurev-genom-082908-150139. Review.

PMID:
21721942
7.

The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics.

Gianoulis TA, Agarwal A, Snyder M, Gerstein MB.

Genome Biol. 2011;12(3):R32. doi: 10.1186/gb-2011-12-3-r32. Epub 2011 Mar 31.

8.

Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches.

Euskirchen GM, Auerbach RK, Davidov E, Gianoulis TA, Zhong G, Rozowsky J, Bhardwaj N, Gerstein MB, Snyder M.

PLoS Genet. 2011 Mar;7(3):e1002008. doi: 10.1371/journal.pgen.1002008. Epub 2011 Mar 3.

9.

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.

Habegger L, Sboner A, Gianoulis TA, Rozowsky J, Agarwal A, Snyder M, Gerstein M.

Bioinformatics. 2011 Jan 15;27(2):281-3. doi: 10.1093/bioinformatics/btq643. Epub 2010 Dec 5.

10.

Extensive in vivo metabolite-protein interactions revealed by large-scale systematic analyses.

Li X, Gianoulis TA, Yip KY, Gerstein M, Snyder M.

Cell. 2010 Nov 12;143(4):639-50. doi: 10.1016/j.cell.2010.09.048. Epub 2010 Oct 28.

11.

Volatile organic compound production by organisms in the genus Ascocoryne and a re-evaluation of myco-diesel production by NRRL 50072.

Griffin MA, Spakowicz DJ, Gianoulis TA, Strobel SA.

Microbiology. 2010 Dec;156(Pt 12):3814-29. doi: 10.1099/mic.0.041327-0. Epub 2010 Aug 12.

PMID:
20705658
12.

Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families.

Patel PV, Gianoulis TA, Bjornson RD, Yip KY, Engelman DM, Gerstein MB.

Genome Res. 2010 Jul;20(7):960-71. doi: 10.1101/gr.102814.109. Epub 2010 Apr 29.

13.

Quantifying environmental adaptation of metabolic pathways in metagenomics.

Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, Letunic I, Yamada T, Paccanaro A, Jensen LJ, Snyder M, Bork P, Gerstein MB.

Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1374-9. doi: 10.1073/pnas.0808022106. Epub 2009 Jan 22.

14.

Divergence of transcription factor binding sites across related yeast species.

Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M.

Science. 2007 Aug 10;317(5839):815-9.

15.

Comparing classical pathways and modern networks: towards the development of an edge ontology.

Lu LJ, Sboner A, Huang YJ, Lu HX, Gianoulis TA, Yip KY, Kim PM, Montelione GT, Gerstein MB.

Trends Biochem Sci. 2007 Jul;32(7):320-31. Epub 2007 Jun 20.

PMID:
17583513
16.

New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis.

Smith MG, Gianoulis TA, Pukatzki S, Mekalanos JJ, Ornston LN, Gerstein M, Snyder M.

Genes Dev. 2007 Mar 1;21(5):601-14.

17.

Integration of curated databases to identify genotype-phenotype associations.

Goh CS, Gianoulis TA, Liu Y, Li J, Paccanaro A, Lussier YA, Gerstein M.

BMC Genomics. 2006 Oct 12;7:257.

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