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Items: 17


MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data.

Meng C, Basunia A, Peters B, Gholami AM, Kuster B, Culhane AC.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S153-S168. doi: 10.1074/mcp.TIR118.001251. Epub 2019 Jun 26.


Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment.

Chandra S, Wingender G, Greenbaum JA, Khurana A, Gholami AM, Ganesan AP, Rosenbach M, Jaffee K, Gern JE, Wood R, O'Connor G, Sandel M, Kattan M, Bacharier L, Togias A, Horner AA, Kronenberg M.

J Immunol. 2018 Mar 15;200(6):1995-2003. doi: 10.4049/jimmunol.1701525. Epub 2018 Feb 5.


Dimension reduction techniques for the integrative analysis of multi-omics data.

Meng C, Zeleznik OA, Thallinger GG, Kuster B, Gholami AM, Culhane AC.

Brief Bioinform. 2016 Jul;17(4):628-41. doi: 10.1093/bib/bbv108. Epub 2016 Mar 11. Review.


Lack of allergy to timothy grass pollen is not a passive phenomenon but associated with the allergen-specific modulation of immune reactivity.

Hinz D, Seumois G, Gholami AM, Greenbaum JA, Lane J, White B, Broide DH, Schulten V, Sidney J, Bakhru P, Oseroff C, Wambre E, James EA, Kwok WW, Peters B, Vijayanand P, Sette A.

Clin Exp Allergy. 2016 May;46(5):705-19. doi: 10.1111/cea.12692.


Quantitative proteome profiling of human myoma and myometrium tissue reveals kinase expression signatures with potential for therapeutic intervention.

Lemeer S, Gholami AM, Wu Z, Kuster B.

Proteomics. 2015 Jan;15(2-3):356-64. doi: 10.1002/pmic.201400213. Epub 2014 Dec 17.


A multivariate approach to the integration of multi-omics datasets.

Meng C, Kuster B, Culhane AC, Gholami AM.

BMC Bioinformatics. 2014 May 29;15:162. doi: 10.1186/1471-2105-15-162.


Mass-spectrometry-based draft of the human proteome.

Wilhelm M, Schlegl J, Hahne H, Gholami AM, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B.

Nature. 2014 May 29;509(7502):582-7. doi: 10.1038/nature13319.


High-fat diet alters gut microbiota physiology in mice.

Daniel H, Gholami AM, Berry D, Desmarchelier C, Hahne H, Loh G, Mondot S, Lepage P, Rothballer M, Walker A, Böhm C, Wenning M, Wagner M, Blaut M, Schmitt-Kopplin P, Kuster B, Haller D, Clavel T.

ISME J. 2014 Feb;8(2):295-308. doi: 10.1038/ismej.2013.155. Epub 2013 Sep 12.


Global proteome analysis of the NCI-60 cell line panel.

Gholami AM, Hahne H, Wu Z, Auer FJ, Meng C, Wilhelm M, Kuster B.

Cell Rep. 2013 Aug 15;4(3):609-20. doi: 10.1016/j.celrep.2013.07.018. Epub 2013 Aug 8.


Comprehensive identification of proteins from MALDI imaging.

Maier SK, Hahne H, Gholami AM, Balluff B, Meding S, Schoene C, Walch AK, Kuster B.

Mol Cell Proteomics. 2013 Oct;12(10):2901-10. doi: 10.1074/mcp.M113.027599. Epub 2013 Jun 19.


Diagnostic values of GHSR DNA methylation pattern in breast cancer.

Botla SK, Gholami AM, Malekpour M, Moskalev EA, Fallah M, Jandaghi P, Aghajani A, Bondar IS, Omranipour R, Malekpour F, Mohajeri A, Babadi AJ, Sahin Ö, Bubnov VV, Najmabadi H, Hoheisel JD, Riazalhosseini Y.

Breast Cancer Res Treat. 2012 Oct;135(3):705-13. doi: 10.1007/s10549-012-2197-z. Epub 2012 Aug 17.


Discovery of O-GlcNAc-modified proteins in published large-scale proteome data.

Hahne H, Gholami AM, Kuster B.

Mol Cell Proteomics. 2012 Oct;11(10):843-50. Epub 2012 Jun 1.


Systematic identification of the HSP90 candidate regulated proteome.

Wu Z, Gholami AM, Kuster B.

Mol Cell Proteomics. 2012 Jun;11(6):M111.016675. doi: 10.1074/mcp.M111.016675. Epub 2012 Feb 14.


Quantitative chemical proteomics reveals new potential drug targets in head and neck cancer.

Wu Z, Doondeea JB, Gholami AM, Janning MC, Lemeer S, Kramer K, Eccles SA, Gollin SM, Grenman R, Walch A, Feller SM, Kuster B.

Mol Cell Proteomics. 2011 Dec;10(12):M111.011635. doi: 10.1074/mcp.M111.011635. Epub 2011 Sep 28.


Sulfite reductase defines a newly discovered bottleneck for assimilatory sulfate reduction and is essential for growth and development in Arabidopsis thaliana.

Khan MS, Haas FH, Samami AA, Gholami AM, Bauer A, Fellenberg K, Reichelt M, Hänsch R, Mendel RR, Meyer AJ, Wirtz M, Hell R.

Plant Cell. 2010 Apr;22(4):1216-31. doi: 10.1105/tpc.110.074088. Epub 2010 Apr 27.


Cross-species common regulatory network inference without requirement for prior gene affiliation.

Gholami AM, Fellenberg K.

Bioinformatics. 2010 Apr 15;26(8):1082-90. doi: 10.1093/bioinformatics/btq096. Epub 2010 Mar 2.


Decoding pooled RNAi screens by means of barcode tiling arrays.

Boettcher M, Fredebohm J, Gholami AM, Hachmo Y, Dotan I, Canaani D, Hoheisel JD.

BMC Genomics. 2010 Jan 5;11:7. doi: 10.1186/1471-2164-11-7.

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