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Items: 18

1.

Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response.

Ghodke H, Paudel BP, Lewis JS, Jergic S, Gopal K, Romero ZJ, Wood EA, Woodgate R, Cox MM, van Oijen AM.

Elife. 2019 Feb 5;8. pii: e42761. doi: 10.7554/eLife.42761.

2.

RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli.

Henrikus SS, Henry C, Ghodke H, Wood EA, Mbele N, Saxena R, Basu U, van Oijen AM, Cox MM, Robinson A.

Nucleic Acids Res. 2019 Apr 8;47(6):2946-2965. doi: 10.1093/nar/gkz003.

3.

Design of DNA rolling-circle templates with controlled fork topology to study mechanisms of DNA replication.

Monachino E, Ghodke H, Spinks RR, Hoatson BS, Jergic S, Xu ZQ, Dixon NE, van Oijen AM.

Anal Biochem. 2018 Sep 15;557:42-45. doi: 10.1016/j.ab.2018.07.008. Epub 2018 Jul 18.

PMID:
30016625
4.

Anisotropic functionalization of upconversion nanoparticles.

Ren W, Wen S, Tawfik SA, Su QP, Lin G, Ju LA, Ford MJ, Ghodke H, van Oijen AM, Jin D.

Chem Sci. 2018 Apr 23;9(18):4352-4358. doi: 10.1039/c8sc01023d. eCollection 2018 May 14.

5.

The transcription-repair coupling factor Mfd associates with RNA polymerase in the absence of exogenous damage.

Ho HN, van Oijen AM, Ghodke H.

Nat Commun. 2018 Apr 20;9(1):1570. doi: 10.1038/s41467-018-03790-z.

6.

Resolving the Gordian Knot: Srs2 Strips Intermediates Formed during Homologous Recombination.

Ghodke H, Lewis JS, van Oijen AM.

Trends Biochem Sci. 2018 Mar;43(3):149-151. doi: 10.1016/j.tibs.2017.12.004. Epub 2017 Dec 28.

PMID:
29290471
7.

Single-molecule live-cell imaging of bacterial DNA repair and damage tolerance.

Ghodke H, Ho H, van Oijen AM.

Biochem Soc Trans. 2018 Feb 19;46(1):23-35. doi: 10.1042/BST20170055. Epub 2017 Dec 1. Review.

PMID:
29196610
8.

Single-Molecule Specific Mislocalization of Red Fluorescent Proteins in Live Escherichia coli.

Ghodke H, Caldas VE, Punter CM, van Oijen AM, Robinson A.

Biophys J. 2016 Jul 12;111(1):25-7. doi: 10.1016/j.bpj.2016.05.047. Epub 2016 Jun 20.

9.

Regulation of Mutagenic DNA Polymerase V Activation in Space and Time.

Robinson A, McDonald JP, Caldas VE, Patel M, Wood EA, Punter CM, Ghodke H, Cox MM, Woodgate R, Goodman MF, van Oijen AM.

PLoS Genet. 2015 Aug 28;11(8):e1005482. doi: 10.1371/journal.pgen.1005482. eCollection 2015 Aug.

10.

iSBatch: a batch-processing platform for data analysis and exploration of live-cell single-molecule microscopy images and other hierarchical datasets.

Caldas VE, Punter CM, Ghodke H, Robinson A, van Oijen AM.

Mol Biosyst. 2015 Oct;11(10):2699-708. doi: 10.1039/c5mb00321k.

PMID:
26198886
11.

Early integration of the individual student in academic activities: a novel classroom concept for graduate education in molecular biophysics and structural biology.

Leuba SH, Carney SM, Dahlburg EM, Eells RJ, Ghodke H, Yanamala N, Schauer G, Klein-Seetharaman J.

BMC Biophys. 2014 Aug 5;7:6. doi: 10.1186/2046-1682-7-6. eCollection 2014.

12.

Single-molecule analysis reveals human UV-damaged DNA-binding protein (UV-DDB) dimerizes on DNA via multiple kinetic intermediates.

Ghodke H, Wang H, Hsieh CL, Woldemeskel S, Watkins SC, Rapić-Otrin V, Van Houten B.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):E1862-71. doi: 10.1073/pnas.1323856111. Epub 2014 Apr 23.

13.

Backbone-branched DNA building blocks for facile angular control in nanostructures.

Paredes E, Zhang X, Ghodke H, Yadavalli VK, Das SR.

ACS Nano. 2013 May 28;7(5):3953-61. doi: 10.1021/nn305787m. Epub 2013 Apr 29.

PMID:
23600590
14.

Real-time single-molecule imaging reveals a direct interaction between UvrC and UvrB on DNA tightropes.

Hughes CD, Wang H, Ghodke H, Simons M, Towheed A, Peng Y, Van Houten B, Kad NM.

Nucleic Acids Res. 2013 May;41(9):4901-12. doi: 10.1093/nar/gkt177. Epub 2013 Mar 19.

15.

The Shu complex interacts with Rad51 through the Rad51 paralogues Rad55-Rad57 to mediate error-free recombination.

Godin S, Wier A, Kabbinavar F, Bratton-Palmer DS, Ghodke H, Van Houten B, VanDemark AP, Bernstein KA.

Nucleic Acids Res. 2013 Apr;41(8):4525-34. doi: 10.1093/nar/gkt138. Epub 2013 Mar 4.

16.

Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair.

Yeh JI, Levine AS, Du S, Chinte U, Ghodke H, Wang H, Shi H, Hsieh CL, Conway JF, Van Houten B, Rapić-Otrin V.

Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):E2737-46. doi: 10.1073/pnas.1110067109. Epub 2012 Jul 20.

17.

Single molecule studies of physiologically relevant telomeric tails reveal POT1 mechanism for promoting G-quadruplex unfolding.

Wang H, Nora GJ, Ghodke H, Opresko PL.

J Biol Chem. 2011 Mar 4;286(9):7479-89. doi: 10.1074/jbc.M110.205641. Epub 2010 Dec 23.

18.

The I-tetraplex building block: rational design and controlled fabrication of robust 1D DNA scaffolds through non-Watson-Crick interactions.

Ghodke HB, Krishnan R, Vignesh K, Kumar GV, Narayana C, Krishnan Y.

Angew Chem Int Ed Engl. 2007;46(15):2646-9. No abstract available.

PMID:
17330917

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