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Genome sequence and description of Blautia brookingsii SG772 sp. nov., a novel bacterial species isolated from human faeces.

Ghimire S, Wongkuna S, Kumar R, Nelson E, Christopher-Hennings J, Scaria J.

New Microbes New Infect. 2020 Jan 7;34:100648. doi: 10.1016/j.nmni.2019.100648. eCollection 2020 Mar.


Application of single-level and multi-level modeling approach to examine geographic and socioeconomic variation in underweight, overweight and obesity in Nepal: findings from NDHS 2016.

Shrestha N, Mishra SR, Ghimire S, Gyawali B, Pradhan PMS, Schwarz D.

Sci Rep. 2020 Feb 12;10(1):2406. doi: 10.1038/s41598-019-56318-w.


Integration of culture-dependent and independent methods provides a more coherent picture of the pig gut microbiome.

Fenske GJ, Ghimire S, Antony L, Christopher-Hennings J, Scaria J.

FEMS Microbiol Ecol. 2020 Feb 7. pii: fiaa022. doi: 10.1093/femsec/fiaa022. [Epub ahead of print]


Identification of Clostridioides difficile-Inhibiting Gut Commensals Using Culturomics, Phenotyping, and Combinatorial Community Assembly.

Ghimire S, Roy C, Wongkuna S, Antony L, Maji A, Keena MC, Foley A, Scaria J.

mSystems. 2020 Feb 4;5(1). pii: e00620-19. doi: 10.1128/mSystems.00620-19.


Sellimonas caecigallum sp. nov., description and genome sequence of a new member of the Sellimonas genus isolated from the cecum of feral chicken.

Wongkuna S, Ghimire S, Antony L, Chankhamhaengdecha S, Janvilisri T, Scaria J.

New Microbes New Infect. 2019 Nov 29;33:100626. doi: 10.1016/j.nmni.2019.100626. eCollection 2020 Jan.


Therapeutic drug monitoring using saliva as matrix: an opportunity for linezolid, but challenge for moxifloxacin.

van den Elsen SHJ, Akkerman OW, Jongedijk EM, Wessels M, Ghimire S, van der Werf TS, Touw DJ, Bolhuis MS, Alffenaar JC.

Eur Respir J. 2020 Jan 24. pii: 1901903. doi: 10.1183/13993003.01903-2019. [Epub ahead of print] No abstract available.


Food insecurity and dietary diversity among lactating mothers in the urban municipality in the mountains of Nepal.

Singh DR, Ghimire S, Upadhayay SR, Singh S, Ghimire U.

PLoS One. 2020 Jan 14;15(1):e0227873. doi: 10.1371/journal.pone.0227873. eCollection 2020.


Specialized stellate cells offer a privileged route for rapid water flux in Drosophila renal tubule.

Cabrero P, Terhzaz S, Dornan AJ, Ghimire S, Holmes HL, Turin DR, Romero MF, Davies SA, Dow JAT.

Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1779-1787. doi: 10.1073/pnas.1915943117. Epub 2020 Jan 6.


A potato RING-finger protein gene StRFP2 is involved in drought tolerance.

Qi X, Tang X, Liu W, Fu X, Luo H, Ghimire S, Zhang N, Si H.

Plant Physiol Biochem. 2020 Jan;146:438-446. doi: 10.1016/j.plaphy.2019.11.042. Epub 2019 Nov 30.


Sampling and degradation of biodegradable plastic and paper mulches in field after tillage incorporation.

Ghimire S, Flury M, Scheenstra EJ, Miles CA.

Sci Total Environ. 2020 Feb 10;703:135577. doi: 10.1016/j.scitotenv.2019.135577. Epub 2019 Nov 18.


Nonradiative Energy Transfer through Distributed Bands in Piezochemically Synthesized Cesium and Formamidinium Lead Halide Perovskites.

Bhagyalakshmi SB, Ghimire S, Takahashi K, Yuyama KI, Takano Y, Nakamura T, Biju V.

Chemistry. 2019 Nov 21. doi: 10.1002/chem.201904300. [Epub ahead of print]


Perception and Practice among Community People and Health Service Providers on Care and Management of Burn Injuries in Nepal: A Qualitative Study.

Bhandari SB, Sah SK, Bhandari KB, Sakya J, Pathak LR, Ghimire S, Devkota B, Hussmann J, Lohmann R.

J Nepal Health Res Counc. 2019 Nov 13;17(3):315-319. doi: 10.33314/jnhrc.v17i3.1640.


Developing tool and Measuring Integration Characteristics of Basic Science Curriculum to Improve Curriculum Integration.

Maharjan BR, Bhandary S, Upadhyay S, Ghimire S, Shrestha I, Joshi M, Vaidya S, Pradhan P.

Kathmandu Univ Med J (KUMJ). 2018 Oct.-Dec.;16(64):338-344.


Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production.

Piccand J, Vagne C, Blot F, Meunier A, Beucher A, Strasser P, Lund ML, Ghimire S, Nivlet L, Lapp C, Petersen N, Engelstoft MS, Thibault-Carpentier C, Keime C, Correa SJ, Schreiber V, Molina N, Schwartz TW, De Arcangelis A, Gradwohl G.

Mol Metab. 2019 Nov;29:24-39. doi: 10.1016/j.molmet.2019.08.007. Epub 2019 Aug 13.


An Evaluation of Food Insecurity and Its Correlates in a Filipino American Study Sample Residing in Clark County, Nevada.

Cheong P, Coughenour C, Shegog M, Ghimire S, Sagadraca L, Sy F.

Health Equity. 2019 Oct 24;3(1):512-519. doi: 10.1089/heq.2019.0074. eCollection 2019.


The burden and correlates of multiple cardiometabolic risk factors in a semi-urban population of Nepal: a community-based cross-sectional study.

Gyawali B, Mishra SR, Ghimire S, Hansen MRH, Shah KJ, Subedee KC, Soti PB, Neupane D, Kallestrup P.

Sci Rep. 2019 Oct 25;9(1):15382. doi: 10.1038/s41598-019-51454-9.


Association between thyroid abnormalities and hypertension among hospitalized US patients: data from the National Inpatient Sample.

Basnet S, Dhital R, Tharu B, Ghimire S, Poudel DR.

Cardiovasc Endocrinol Metab. 2018 Nov 14;7(4):97-98. doi: 10.1097/XCE.0000000000000155. eCollection 2018 Dec.


Allele-specific enhancer interaction at the Peg3 imprinted domain.

Kim J, Frey WD, Sharma K, Ghimire S, Teruyama R, Stubbs L.

PLoS One. 2019 Oct 22;14(10):e0224287. doi: 10.1371/journal.pone.0224287. eCollection 2019.


Evaluation of CpG-ODN-adjuvanted polyanhydride-based intranasal influenza nanovaccine in pigs.

Dhakal S, Ghimire S, Renu S, Ross KA, Lakshmanappa YS, Hogshead BT, Bernardo P, Lee CW, Wannemuehler MJ, Narasimhan B, Renukaradhya GJ.

Vet Microbiol. 2019 Oct;237:108401. doi: 10.1016/j.vetmic.2019.108401. Epub 2019 Aug 28.


Plant density and life history traits of Aconitum spicatum in North-central Nepal: effects of elevation and anthropogenic disturbances.

Chapagain DJ, Meilby H, Ghimire SK.

PeerJ. 2019 Sep 10;7:e7574. doi: 10.7717/peerj.7574. eCollection 2019.


Decline in telomere length by age and effect modification by gender, allostatic load and comorbidities in National Health and Nutrition Examination Survey (1999-2002).

Ghimire S, Hill CV, Sy FS, Rodriguez R.

PLoS One. 2019 Aug 30;14(8):e0221690. doi: 10.1371/journal.pone.0221690. eCollection 2019.


Frizzled3 and Frizzled6 Cooperate with Vangl2 to Direct Cochlear Innervation by Type II Spiral Ganglion Neurons.

Ghimire SR, Deans MR.

J Neurosci. 2019 Oct 9;39(41):8013-8023. doi: 10.1523/JNEUROSCI.1740-19.2019. Epub 2019 Aug 28.


Undergraduate nursing students' knowledge of aging, attitudes toward and perceptions of working with older adults in Kathmandu Nepal.

Ghimire S, Shrestha N, Callahan KE, Nath D, Baral BK, Lekhak N, Singh DR.

Int J Nurs Sci. 2019 Mar 7;6(2):204-210. doi: 10.1016/j.ijnss.2019.03.003. eCollection 2019 Apr 10.


Genetic Profiling of Aspergillus Isolates with Varying Aflatoxin Production Potential from Different Maize-Growing Regions of Kenya.

Dooso Oloo R, Okoth S, Wachira P, Mutiga S, Ochieng P, Kago L, Nganga F, Domelevo Entfellner JB, Ghimire S.

Toxins (Basel). 2019 Aug 9;11(8). pii: E467. doi: 10.3390/toxins11080467.


Amish (Rural) vs. non-Amish (Urban) Infant Fecal Microbiotas Are Highly Diverse and Their Transplantation Lead to Differences in Mucosal Immune Maturation in a Humanized Germfree Piglet Model.

Dhakal S, Wang L, Antony L, Rank J, Bernardo P, Ghimire S, Bondra K, Siems C, Lakshmanappa YS, Renu S, Hogshead B, Krakowka S, Kauffman M, Scaria J, LeJeune JT, Yu Z, Renukaradhya GJ.

Front Immunol. 2019 Jul 16;10:1509. doi: 10.3389/fimmu.2019.01509. eCollection 2019.


Targeted renal knockdown of Na+/H+ exchanger regulatory factor Sip1 produces uric acid nephrolithiasis in Drosophila.

Ghimire S, Terhzaz S, Cabrero P, Romero MF, Davies SA, Dow JAT.

Am J Physiol Renal Physiol. 2019 Oct 1;317(4):F930-F940. doi: 10.1152/ajprenal.00551.2018. Epub 2019 Jul 31.


Harvest effects on density and biomass of Neopicrorhiza scrophulariiflora vary along environmental gradients in the Nepalese Himalayas.

Poudeyal MR, Meilby H, Shrestha BB, Ghimire SK.

Ecol Evol. 2019 Jun 19;9(13):7726-7740. doi: 10.1002/ece3.5355. eCollection 2019 Jul.


Mycotoxin Contamination of Edible Non-Timber Forest Products in Cameroon.

Djeugap JF, Ghimire S, Wanjuki I, Muiruri A, Harvey J.

Toxins (Basel). 2019 Jul 22;11(7). pii: E430. doi: 10.3390/toxins11070430.


Life cycle assessment of a rainwater harvesting system compared with an AC condensate harvesting system.

Ghimire SR, Johnston JM, Garland J, Edelen A, Ma XC, Jahne M.

Resour Conserv Recycl. 2019;146:536-548. doi: 10.1016/j.resconrec.2019.01.043.


Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems.

Sandhu N, Subedi SR, Singh VK, Sinha P, Kumar S, Singh SP, Ghimire SK, Pandey M, Yadaw RB, Varshney RK, Kumar A.

Sci Rep. 2019 Jun 27;9(1):9334. doi: 10.1038/s41598-019-45770-3.


Undergraduate pharmacy students' attitudes and perceived barriers toward provision of pharmaceutical care: a multi-institutional study in Nepal.

Baral SR, Parajuli DR, Shrestha S, Acharya SR, Dahal P, Poudel P, Ghimire S, Palaian S, Shrestha N.

Integr Pharm Res Pract. 2019 Jun 5;8:47-59. doi: 10.2147/IPRP.S203240. eCollection 2019.


Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition.

Subedi SR, Sandhu N, Singh VK, Sinha P, Kumar S, Singh SP, Ghimire SK, Pandey M, Yadaw RB, Varshney RK, Kumar A.

BMC Genomics. 2019 Jun 10;20(1):471. doi: 10.1186/s12864-019-5840-9.


Sustainability assessment of agricultural rainwater harvesting: Evaluation of alternative crop types and irrigation practices.

Ghimire SR, Johnston JM.

PLoS One. 2019 May 10;14(5):e0216452. doi: 10.1371/journal.pone.0216452. eCollection 2019.


Perception of Community and Hospital Personnel on Burn Treatment and Outcome in Nepal.

Sakya J, Sah SK, Bhandari KB, Pathak LR, Bhandari SB, Ghimire S, Devkota B, Hussmann J.

JNMA J Nepal Med Assoc. 2018 Nov-Dec;56(214):924-930.


Cardio-metabolic disease risk factors among South Asian labour migrants to the Middle East: a scoping review and policy analysis.

Mishra SR, Ghimire S, Joshi C, Gyawali B, Shrestha A, Neupane D, Sharma SR, Pokharel Y, Virani SS.

Global Health. 2019 May 2;15(1):33. doi: 10.1186/s12992-019-0468-8. Review.


Influence of abnormal potassium levels on mortality among hospitalized heart failure patients in the US: data from National Inpatient Sample.

Basnet S, Dhital R, Tharu B, Ghimire S, Poudel DR, Donato A.

J Community Hosp Intern Med Perspect. 2019 Apr 12;9(2):103-107. doi: 10.1080/20009666.2019.1593778. eCollection 2019 Apr.


May Measurement Month 2017: an analysis of blood pressure screening results in Nepal-South Asia.

Mishra SR, Shrestha N, Poudyal IP, Malla M, Gyawali B, Shrestha AD, Pokharel S, Gyawali M, Sapkota S, Bhattarai H, Dhakal L, Soti PB, Ghimire S, Paudel R, Xia X, Beaney T, Koirala S, Olsen MH, Poulter NR, Kallestrup P, Neupane D.

Eur Heart J Suppl. 2019 Apr;21(Suppl D):D83-D85. doi: 10.1093/eurheartj/suz063. Epub 2019 Apr 24.


Is selenium intake associated with the presence of depressive symptoms among US adults? Findings from National Health and Nutrition Examination Survey (NHANES) 2011-2014.

Ghimire S, Baral BK, Feng D, Sy FS, Rodriguez R.

Nutrition. 2019 Jun;62:169-176. doi: 10.1016/j.nut.2018.12.007. Epub 2018 Dec 21.


Gut Microbial Dynamics during Conventionalization of Germfree Chicken.

Thomas M, Wongkuna S, Ghimire S, Kumar R, Antony L, Doerner KC, Singery A, Nelson E, Woyengo T, Chankhamhaengdecha S, Janvilisri T, Scaria J.

mSphere. 2019 Mar 27;4(2). pii: e00035-19. doi: 10.1128/mSphere.00035-19.


Photoinduced photoluminescence enhancement in self-assembled clusters of formamidinium lead bromide perovskite nanocrystals.

Ghimire S, Nair VC, Muthu C, Yuyama KI, Vacha M, Biju V.

Nanoscale. 2019 May 16;11(19):9335-9340. doi: 10.1039/c8nr10082a.


Noninvasive Reconstruction of Transmural Transmembrane Potential With Simultaneous Estimation of Prior Model Error.

Ghimire S, Sapp JL, Horacek BM, Wang L.

IEEE Trans Med Imaging. 2019 Nov;38(11):2582-2595. doi: 10.1109/TMI.2019.2906600. Epub 2019 Mar 20.


N-Acyl pyrazoles: Effective and tunable inhibitors of serine hydrolases.

Otrubova K, Chatterjee S, Ghimire S, Cravatt BF, Boger DL.

Bioorg Med Chem. 2019 Apr 15;27(8):1693-1703. doi: 10.1016/j.bmc.2019.03.020. Epub 2019 Mar 11.


Effects of dynamic loading on fracture healing under different locking compression plate configurations: A finite element study.

Ghimire S, Miramini S, Richardson M, Mendis P, Zhang L.

J Mech Behav Biomed Mater. 2019 Jun;94:74-85. doi: 10.1016/j.jmbbm.2019.03.004. Epub 2019 Mar 7.


Adult Children's Migration and Well-being of Left Behind Nepalese Elderly Parents.

Ghimire S, Singh DR, Nath D, Jeffers EM, Kaphle M.

J Epidemiol Glob Health. 2018 Dec;8(3-4):154-161. doi: 10.2991/j.jegh.2018.07.004.


The effect of different processing methods on nutrient and isoflavone content of soymilk obtained from six varieties of soybean grown in Rwanda.

Niyibituronsa M, Onyango AN, Gaidashova S, Imathiu S, Uwizerwa M, Ochieng EP, Ng'ang'a F, Birungi J, Ghimire S, Harvey J.

Food Sci Nutr. 2018 Oct 25;7(2):457-464. doi: 10.1002/fsn3.812. eCollection 2019 Feb.


Health Care Utilization and Health Care Expenditure of Nepali Older Adults.

Acharya S, Ghimire S, Jeffers EM, Shrestha N.

Front Public Health. 2019 Feb 15;7:24. doi: 10.3389/fpubh.2019.00024. eCollection 2019.


Adherence assessment practices in haemodialysis settings: A qualitative exploration of nurses and pharmacists' perspectives.

Ghimire S, Lee K, Jose MD, Castelino RL, Zaidi STR.

J Clin Nurs. 2019 Jun;28(11-12):2197-2205. doi: 10.1111/jocn.14821. Epub 2019 Mar 12.


Evaluation of Saliva as a Potential Alternative Sampling Matrix for Therapeutic Drug Monitoring of Levofloxacin in Patients with Multidrug-Resistant Tuberculosis.

Ghimire S, Maharjan B, Jongedijk EM, Kosterink JGW, Ghimire GR, Touw DJ, van der Werf TS, Shrestha B, Alffenaar JC.

Antimicrob Agents Chemother. 2019 Apr 25;63(5). pii: e02379-18. doi: 10.1128/AAC.02379-18. Print 2019 May.


Role of ketone signaling in the hepatic response to fasting.

Geisler CE, Ghimire S, Bogan RL, Renquist BJ.

Am J Physiol Gastrointest Liver Physiol. 2019 May 1;316(5):G623-G631. doi: 10.1152/ajpgi.00415.2017. Epub 2019 Feb 15.


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