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Items: 30

1.

A review on hypersensitivity reactions to fungal aeroallergens in patients with allergic disorders in Iran.

Nazari Z, Ghaffari J, Ghaffari N, Ahangarkani F.

Curr Med Mycol. 2019 Mar;5(1):42-47. doi: 10.18502/cmm.5.1.537. Review.

2.

Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer-enhancer interactions.

Beytebiere JR, Trott AJ, Greenwell BJ, Osborne CA, Vitet H, Spence J, Yoo SH, Chen Z, Takahashi JS, Ghaffari N, Menet JS.

Genes Dev. 2019 Mar 1;33(5-6):294-309. doi: 10.1101/gad.322198.118. Epub 2019 Feb 25.

PMID:
30804225
3.

[The "sacrificial electrode" : A safe option for the management of pacemaker infections in pacemaker-dependent patients].

Ghaffari N, Arslan I, Stahlhut P, Mehlhorn U, Conzelmann LO.

Herz. 2018 Nov;43(7):617-620. doi: 10.1007/s00059-018-4749-4. German.

PMID:
30218166
4.

Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline.

Ghaffari N, Arshad OA, Jeong H, Thiltges J, Criscitiello MF, Yoon BJ, Datta A, Johnson CD.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Mar-Apr;15(2):494-505. doi: 10.1109/TCBB.2015.2446478.

PMID:
29610098
5.

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment.

Abante J, Ghaffari N, Johnson CD, Datta A.

BMC Genomics. 2017 Sep 5;18(1):694. doi: 10.1186/s12864-017-3965-2.

6.

Retentive Strength of Orthodontic Bands Cemented with Amorphous Calcium Phosphate-Modified Glass Ionomer Cement: An In-Vitro Study.

Heravi F, Omidkhoda M, Koohestanian N, Hooshmand T, Bagheri H, Ghaffari N.

J Dent (Tehran). 2017 Jan;14(1):13-20.

7.

Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy.

Chen CC, Ghaffari N, Qian X, Yoon BJ.

Comput Biol Chem. 2017 Aug;69:153-163. doi: 10.1016/j.compbiolchem.2017.03.016. Epub 2017 Apr 3.

PMID:
28528020
8.

Implementation of a universal cervical length screening program: identifying factors associated with decline rates.

Ghartey J, Ghaffari N, Levine LD, Schwartz N, Durnwald CP.

J Matern Fetal Neonatal Med. 2018 May;31(9):1124-1127. doi: 10.1080/14767058.2017.1309386. Epub 2017 Apr 10.

PMID:
28320241
9.

Placental microRNA Expression Is Not Altered by Maternal Obesity and Fetal Overgrowth.

Ghaffari N, Parry S, Elovitz MA, Durnwald CP.

AJP Rep. 2016 Oct;6(4):e430-e435. doi: 10.1055/s-0036-1597652.

10.

Prenatal care in a specialized diabetes in pregnancy program improves compliance with postpartum testing in GDM women.

Huynh T, Ghaffari N, Bastek J, Durnwald C.

J Matern Fetal Neonatal Med. 2017 May;30(9):1075-1079. doi: 10.1080/14767058.2016.1201472. Epub 2016 Jun 29.

PMID:
27296556
11.

A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction.

Torres MF, Ghaffari N, Buiate EA, Moore N, Schwartz S, Johnson CD, Vaillancourt LJ.

BMC Genomics. 2016 Mar 8;17:202. doi: 10.1186/s12864-016-2546-0.

12.

The multidisciplinary approach to the care of the obese parturient.

Ghaffari N, Srinivas SK, Durnwald CP.

Am J Obstet Gynecol. 2015 Sep;213(3):318-25. doi: 10.1016/j.ajog.2015.03.001. Epub 2015 Mar 4. Review.

PMID:
25747546
13.

The Effect of an Obesogenic Maternal Environment on Expression of Fetal Umbilical Cord Blood miRNA.

Ghaffari N, Parry S, Elovitz MA, Durnwald CP.

Reprod Sci. 2015 Jul;22(7):860-4. doi: 10.1177/1933719114565032. Epub 2014 Dec 28.

14.

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.

Ghaffari N, Sanchez-Flores A, Doan R, Garcia-Orozco KD, Chen PL, Ochoa-Leyva A, Lopez-Zavala AA, Carrasco JS, Hong C, Brieba LG, Rudiño-Piñera E, Blood PD, Sawyer JE, Johnson CD, Dindot SV, Sotelo-Mundo RR, Criscitiello MF.

Sci Rep. 2014 Nov 25;4:7081. doi: 10.1038/srep07081.

15.

Transplantation of bone marrow stem cells during cardiac surgery.

Ali-Hasan-Al-Saegh S, Mirhosseini SJ, Lotfaliani MR, Dehghan HR, Sedaghat-Hamedani F, Kayvanpour E, Rezaeisadrabadi M, Ghaffari N, Vahabzadeh V, Jebran AF, Sabashnikov A, Popov AF.

Asian Cardiovasc Thorac Ann. 2015 Mar;23(3):363-74. doi: 10.1177/0218492314553251. Epub 2014 Oct 3. Review.

PMID:
25281762
16.

Should the integrity of the pleura during internal mammary artery harvesting be preserved?

Ali-Hassan-Sayegh S, Mirhosseini SJ, Vahabzadeh V, Ghaffari N.

Interact Cardiovasc Thorac Surg. 2014 Nov;19(5):838-47. doi: 10.1093/icvts/ivu254. Epub 2014 Jul 31. Review.

PMID:
25082837
17.

Posterior pericardiotomy in cardiac surgery: systematic review and meta-analysis.

Ali-Hasan-Al-Saegh S, Mirhosseini SJ, Liakopoulos O, Sabashnikov A, Dehghan HR, Sedaghat-Hamedani F, Kayvanpour E, Ghaffari N, Vahabzadeh V, Aghabagheri M, Mozayan MR, Popov AF.

Asian Cardiovasc Thorac Ann. 2015 Mar;23(3):354-62. doi: 10.1177/0218492314541132. Epub 2014 Jun 19. Review.

PMID:
24948784
18.

Evaluation of shear bond strength of orthodontic brackets using trans-illumination technique with different curing profiles of LED light-curing unit in posterior teeth.

Heravi F, Moazzami SM, Ghaffari N, Jalayer J, Bozorgnia Y.

Prog Orthod. 2013 Nov 21;14:49. doi: 10.1186/2196-1042-14-49.

19.

Modeling the next generation sequencing sample processing pipeline for the purposes of classification.

Ghaffari N, Yousefi MR, Johnson CD, Ivanov I, Dougherty ER.

BMC Bioinformatics. 2013 Oct 11;14:307. doi: 10.1186/1471-2105-14-307.

20.

Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare.

Doan R, Cohen ND, Sawyer J, Ghaffari N, Johnson CD, Dindot SV.

BMC Genomics. 2012 Feb 17;13:78. doi: 10.1186/1471-2164-13-78.

21.

Antipsychotics leading to neuroleptic malignant syndrome in pregnancy.

Ghaffari N, Dossett E, Lee RH, Aghajanian P.

Obstet Gynecol. 2012 Feb;119(2 Pt 2):436-8. doi: 10.1097/AOG.0b013e31822864af.

PMID:
22270430
22.

A CoD-based stationary control policy for intervening in large gene regulatory networks.

Ghaffari N, Ivanov I, Qian X, Dougherty ER.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S10. doi: 10.1186/1471-2105-12-S10-S10.

23.

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.

Wang Y, Ghaffari N, Johnson CD, Braga-Neto UM, Wang H, Chen R, Zhou H.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S5. doi: 10.1186/1471-2105-12-S10-S5.

24.

Acute modulation of vasoconstrictor responses by pravastatin in small vessels.

Ghaffari N, Ball C, Kennedy JA, Stafford I, Beltrame JF.

Circ J. 2011;75(6):1506-14. Epub 2011 Apr 29.

25.

State reduction for network intervention in probabilistic Boolean networks.

Qian X, Ghaffari N, Ivanov I, Dougherty ER.

Bioinformatics. 2010 Dec 15;26(24):3098-104. doi: 10.1093/bioinformatics/btq575. Epub 2010 Oct 17.

26.

A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.

Ghaffari N, Ivanov I, Qian X, Dougherty ER.

Bioinformatics. 2010 Jun 15;26(12):1556-63. doi: 10.1093/bioinformatics/btq225. Epub 2010 Apr 25.

PMID:
20421196
27.

Intervention in gene regulatory networks via greedy control policies based on long-run behavior.

Qian X, Ivanov I, Ghaffari N, Dougherty ER.

BMC Syst Biol. 2009 Jun 15;3:61. doi: 10.1186/1752-0509-3-61.

28.

Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning.

Harris C, Ghaffari N.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S7. doi: 10.1186/1471-2164-9-S2-S7.

29.

Clinical trial: the effect of amitriptyline in patients with diarrhoea-predominant irritable bowel syndrome.

Vahedi H, Merat S, Momtahen S, Kazzazi AS, Ghaffari N, Olfati G, Malekzadeh R.

Aliment Pharmacol Ther. 2008 Apr;27(8):678-84. doi: 10.1111/j.1365-2036.2008.03633.x. Epub 2008 Jan 30.

30.

Enteric duplication cysts of the pancreas: a report of two cases and review of the literature.

Hunter CJ, Connelly ME, Ghaffari N, Anselmo D, Gonzalez I, Shin C.

Pediatr Surg Int. 2008 Feb;24(2):227-33. Epub 2007 Nov 30. Review.

PMID:
18060413

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