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Items: 1 to 50 of 336

1.

Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.

Van Leene J, Han C, Gadeyne A, Eeckhout D, Matthijs C, Cannoot B, De Winne N, Persiau G, Van De Slijke E, Van de Cotte B, Stes E, Van Bel M, Storme V, Impens F, Gevaert K, Vandepoele K, De Smet I, De Jaeger G.

Nat Plants. 2019 Mar;5(3):316-327. doi: 10.1038/s41477-019-0378-z. Epub 2019 Mar 4.

PMID:
30833711
2.

Caught green-handed: methods for in vivo detection and visualization of protease activity.

Fernández-Fernández ÁD, van der Hoorn RAL, Gevaert K, Van Breusegem F, Stael S.

J Exp Bot. 2019 Feb 26. pii: erz076. doi: 10.1093/jxb/erz076. [Epub ahead of print]

PMID:
30805604
3.

Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis.

Escamez S, Stael S, Vainonen J, Willems P, Jin H, Kimura S, Van Breusegem F, Gevaert K, Wrzaczek M, Tuominen H.

J Exp Bot. 2019 Feb 7. doi: 10.1093/jxb/erz021. [Epub ahead of print]

PMID:
30753577
4.

Feeling the Heat: Searching for Plant Thermosensors.

Vu LD, Gevaert K, De Smet I.

Trends Plant Sci. 2019 Mar;24(3):210-219. doi: 10.1016/j.tplants.2018.11.004. Epub 2018 Dec 17. Review.

PMID:
30573309
5.

A protein-protein interaction map of the TNF-induced NF-κB signal transduction pathway.

Van Quickelberghe E, De Sutter D, van Loo G, Eyckerman S, Gevaert K.

Sci Data. 2018 Dec 18;5:180289. doi: 10.1038/sdata.2018.289.

6.

Design and visualization of second-generation cyanoisoindole-based fluorescent strigolactone analogs.

Van Overtveldt M, Braem L, Struk S, Kaczmarek AM, Boyer FD, Van Deun R, Gevaert K, Goormachtig S, Heugebaert TSA, Stevens CV.

Plant J. 2018 Dec 15. doi: 10.1111/tpj.14197. [Epub ahead of print]

PMID:
30552776
7.

Look Closely, the Beautiful May Be Small: Precursor-Derived Peptides in Plants.

Olsson V, Joos L, Zhu S, Gevaert K, Butenko MA, De Smet I.

Annu Rev Plant Biol. 2018 Dec 10. doi: 10.1146/annurev-arplant-042817-040413. [Epub ahead of print]

PMID:
30525926
8.

A Well-Controlled BioID Design for Endogenous Bait Proteins.

Vandemoortele G, De Sutter D, Moliere A, Pauwels J, Gevaert K, Eyckerman S.

J Proteome Res. 2018 Dec 10. doi: 10.1021/acs.jproteome.8b00367. [Epub ahead of print]

PMID:
30525648
9.

Selection of egg peptide biomarkers in processed food products by high resolution mass spectrometry.

Gavage M, Van Vlierberghe K, Van Poucke C, De Loose M, Gevaert K, Dieu M, Renard P, Arnould T, Gillard N.

J Chromatogr A. 2019 Jan 11;1584:115-125. doi: 10.1016/j.chroma.2018.11.036. Epub 2018 Nov 20.

PMID:
30473111
10.

Challenges in the Structural-Functional Characterization of Multidomain, Partially Disordered Proteins CBP and p300: Preparing Native Proteins and Developing Nanobody Tools.

Bekesi A, Abdellaoui S, Holroyd N, Van Delm W, Pardon E, Pauwels J, Gevaert K, Steyaert J, Derveaux S, Borysik A, Tompa P.

Methods Enzymol. 2018;611:607-675. doi: 10.1016/bs.mie.2018.09.032. Epub 2018 Nov 3.

PMID:
30471702
11.

Mutations in LZTR1 drive human disease by dysregulating RAS ubiquitination.

Steklov M, Pandolfi S, Baietti MF, Batiuk A, Carai P, Najm P, Zhang M, Jang H, Renzi F, Cai Y, Abbasi Asbagh L, Pastor T, De Troyer M, Simicek M, Radaelli E, Brems H, Legius E, Tavernier J, Gevaert K, Impens F, Messiaen L, Nussinov R, Heymans S, Eyckerman S, Sablina AA.

Science. 2018 Dec 7;362(6419):1177-1182. doi: 10.1126/science.aap7607. Epub 2018 Nov 15.

PMID:
30442762
12.

Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection.

Wrzesińska B, Dai Vu L, Gevaert K, De Smet I, Obrępalska-Stęplowska A.

Int J Mol Sci. 2018 Oct 18;19(10). pii: E3223. doi: 10.3390/ijms19103223.

13.

Protein Language: Post-Translational Modifications Talking to Each Other.

Vu LD, Gevaert K, De Smet I.

Trends Plant Sci. 2018 Dec;23(12):1068-1080. doi: 10.1016/j.tplants.2018.09.004. Epub 2018 Sep 29. Review.

PMID:
30279071
14.

The autophagy receptor SQSTM1/p62 mediates anti-inflammatory actions of the selective NR3C1/glucocorticoid receptor modulator compound A (CpdA) in macrophages.

Mylka V, Deckers J, Ratman D, De Cauwer L, Thommis J, De Rycke R, Impens F, Libert C, Tavernier J, Vanden Berghe W, Gevaert K, De Bosscher K.

Autophagy. 2018;14(12):2049-2064. doi: 10.1080/15548627.2018.1495681. Epub 2018 Sep 14.

PMID:
30215534
15.

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.

Nassrallah A, Rougée M, Bourbousse C, Drevensek S, Fonseca S, Iniesto E, Ait-Mohamed O, Deton-Cabanillas AF, Zabulon G, Ahmed I, Stroebel D, Masson V, Lombard B, Eeckhout D, Gevaert K, Loew D, Genovesio A, Breyton C, De Jaeger G, Bowler C, Rubio V, Barneche F.

Elife. 2018 Sep 7;7. pii: e37892. doi: 10.7554/eLife.37892.

16.

Exploring the protein-protein interaction landscape in plants.

Struk S, Jacobs A, Sánchez Martín-Fontecha E, Gevaert K, Cubas P, Goormachtig S.

Plant Cell Environ. 2019 Feb;42(2):387-409. doi: 10.1111/pce.13433. Epub 2018 Oct 3. Review.

PMID:
30156707
17.

N-terminal Acetylation Levels Are Maintained During Acetyl-CoA Deficiency in Saccharomyces cerevisiae.

Varland S, Aksnes H, Kryuchkov F, Impens F, Van Haver D, Jonckheere V, Ziegler M, Gevaert K, Van Damme P, Arnesen T.

Mol Cell Proteomics. 2018 Dec;17(12):2309-2323. doi: 10.1074/mcp.RA118.000982. Epub 2018 Aug 27.

18.

Impairment of Angiogenesis by Fatty Acid Synthase Inhibition Involves mTOR Malonylation.

Bruning U, Morales-Rodriguez F, Kalucka J, Goveia J, Taverna F, Queiroz KCS, Dubois C, Cantelmo AR, Chen R, Loroch S, Timmerman E, Caixeta V, Bloch K, Conradi LC, Treps L, Staes A, Gevaert K, Tee A, Dewerchin M, Semenkovich CF, Impens F, Schilling B, Verdin E, Swinnen JV, Meier JL, Kulkarni RA, Sickmann A, Ghesquière B, Schoonjans L, Li X, Mazzone M, Carmeliet P.

Cell Metab. 2018 Dec 4;28(6):866-880.e15. doi: 10.1016/j.cmet.2018.07.019. Epub 2018 Aug 23.

PMID:
30146486
19.

Distinct branches of the N-end rule pathway modulate the plant immune response.

Vicente J, Mendiondo GM, Pauwels J, Pastor V, Izquierdo Y, Naumann C, Movahedi M, Rooney D, Gibbs DJ, Smart K, Bachmair A, Gray JE, Dissmeyer N, Castresana C, Ray RV, Gevaert K, Holdsworth MJ.

New Phytol. 2019 Jan;221(2):988-1000. doi: 10.1111/nph.15387. Epub 2018 Aug 17.

20.

Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators.

Nikonorova N, Van den Broeck L, Zhu S, van de Cotte B, Dubois M, Gevaert K, Inzé D, De Smet I.

J Exp Bot. 2018 Aug 31;69(19):4591-4607. doi: 10.1093/jxb/ery261.

21.

Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms.

Vu LD, Zhu T, Verstraeten I, van de Cotte B; International Wheat Genome Sequencing Consortium, Gevaert K, De Smet I.

J Exp Bot. 2018 Aug 31;69(19):4609-4624. doi: 10.1093/jxb/ery204.

22.

Evolutionarily conserved and species-specific glycoproteins in the N-glycoproteomes of diverse insect species.

Scheys F, Van Damme EJM, De Schutter K, Staes A, Gevaert K, Smagghe G.

Insect Biochem Mol Biol. 2018 Sep;100:22-29. doi: 10.1016/j.ibmb.2018.04.011. Epub 2018 Jun 12.

PMID:
29906502
23.

Quantitative proteomics and systems analysis of cultured H9C2 cardiomyoblasts during differentiation over time supports a 'function follows form' model of differentiation.

Kankeu C, Clarke K, Van Haver D, Gevaert K, Impens F, Dittrich A, Roderick HL, Passante E, Huber HJ.

Mol Omics. 2018 Jun 12;14(3):181-196. doi: 10.1039/c8mo00036k.

PMID:
29770421
24.

Quantitative Tandem Affinity Purification, an Effective Tool to Investigate Protein Complex Composition in Plant Hormone Signaling: Strigolactones in the Spotlight.

Struk S, Braem L, Walton A, De Keyser A, Boyer FD, Persiau G, De Jaeger G, Gevaert K, Goormachtig S.

Front Plant Sci. 2018 Apr 26;9:528. doi: 10.3389/fpls.2018.00528. eCollection 2018.

25.

Identification of Immune-Responsive Gene 1 (IRG1) as a Target of A20.

Van Quickelberghe E, Martens A, Goeminne LJE, Clement L, van Loo G, Gevaert K.

J Proteome Res. 2018 Jun 1;17(6):2182-2191. doi: 10.1021/acs.jproteome.8b00139. Epub 2018 May 11.

PMID:
29733654
26.

GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants.

Besbrugge N, Van Leene J, Eeckhout D, Cannoot B, Kulkarni SR, De Winne N, Persiau G, Van De Slijke E, Bontinck M, Aesaert S, Impens F, Gevaert K, Van Damme D, Van Lijsebettens M, Inzé D, Vandepoele K, Nelissen H, De Jaeger G.

Plant Physiol. 2018 Jun;177(2):447-464. doi: 10.1104/pp.18.00175. Epub 2018 Apr 20.

27.

Author Correction: The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Bossche RV, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Gevaert K, De Jaeger G, Vandepoele K, Pauwels L, Goossens A.

Nat Commun. 2018 Apr 10;9:16213. doi: 10.1038/ncomms16213.

28.

FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination.

Fernandes JB, Duhamel M, Seguéla-Arnaud M, Froger N, Girard C, Choinard S, Solier V, De Winne N, De Jaeger G, Gevaert K, Andrey P, Grelon M, Guerois R, Kumar R, Mercier R.

PLoS Genet. 2018 Apr 2;14(4):e1007317. doi: 10.1371/journal.pgen.1007317. eCollection 2018 Apr.

29.

NAA80 is actin's N-terminal acetyltransferase and regulates cytoskeleton assembly and cell motility.

Drazic A, Aksnes H, Marie M, Boczkowska M, Varland S, Timmerman E, Foyn H, Glomnes N, Rebowski G, Impens F, Gevaert K, Dominguez R, Arnesen T.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4399-4404. doi: 10.1073/pnas.1718336115. Epub 2018 Mar 26.

30.

Proteome Analysis of Arabidopsis Roots.

Nikonorova N, Vu LD, Stes E, Gevaert K, De Smet I.

Methods Mol Biol. 2018;1761:263-274. doi: 10.1007/978-1-4939-7747-5_20.

PMID:
29525964
31.

RIPK4 activity in keratinocytes is controlled by the SCFβ-TrCP ubiquitin ligase to maintain cortical actin organization.

Tanghe G, Urwyler-Rösselet C, De Groote P, Dejardin E, De Bock PJ, Gevaert K, Vandenabeele P, Declercq W.

Cell Mol Life Sci. 2018 Aug;75(15):2827-2841. doi: 10.1007/s00018-018-2763-6. Epub 2018 Feb 12.

PMID:
29435596
32.

Synaptogyrin-3 Mediates Presynaptic Dysfunction Induced by Tau.

McInnes J, Wierda K, Snellinx A, Bounti L, Wang YC, Stancu IC, Apóstolo N, Gevaert K, Dewachter I, Spires-Jones TL, De Strooper B, De Wit J, Zhou L, Verstreken P.

Neuron. 2018 Feb 21;97(4):823-835.e8. doi: 10.1016/j.neuron.2018.01.022. Epub 2018 Feb 1.

33.

Chronic Kidney Disease Circulating Calciprotein Particles and Extracellular Vesicles Promote Vascular Calcification: A Role for GRP (Gla-Rich Protein).

Viegas CSB, Santos L, Macedo AL, Matos AA, Silva AP, Neves PL, Staes A, Gevaert K, Morais R, Vermeer C, Schurgers L, Simes DC.

Arterioscler Thromb Vasc Biol. 2018 Mar;38(3):575-587. doi: 10.1161/ATVBAHA.117.310578. Epub 2018 Jan 4.

PMID:
29301790
34.

Seed germination in parasitic plants: what insights can we expect from strigolactone research?

Brun G, Braem L, Thoiron S, Gevaert K, Goormachtig S, Delavault P.

J Exp Bot. 2018 Apr 23;69(9):2265-2280. doi: 10.1093/jxb/erx472.

PMID:
29281042
35.

Selective Glucocorticoid Receptor Properties of GSK866 Analogs with Cysteine Reactive Warheads.

Chirumamilla CS, Palagani A, Kamaraj B, Declerck K, Verbeek MWC, Oksana R, De Bosscher K, Bougarne N, Ruttens B, Gevaert K, Houtman R, De Vos WH, Joossens J, Van Der Veken P, Augustyns K, Van Ostade X, Bogaerts A, De Winter H, Vanden Berghe W.

Front Immunol. 2017 Nov 1;8:1324. doi: 10.3389/fimmu.2017.01324. eCollection 2017.

36.

Organellar Omics-A Reviving Strategy to Untangle the Biomolecular Complexity of the Cell.

Tharkeshwar AK, Gevaert K, Annaert W.

Proteomics. 2018 Mar;18(5-6):e1700113. doi: 10.1002/pmic.201700113. Epub 2017 Dec 14. Review.

PMID:
29125683
37.

Disulfide bond formation protects Arabidopsis thaliana glutathione transferase tau 23 from oxidative damage.

Tossounian MA, Van Molle I, Wahni K, Jacques S, Gevaert K, Van Breusegem F, Vertommen D, Young D, Rosado LA, Messens J.

Biochim Biophys Acta Gen Subj. 2018 Mar;1862(3):775-789. doi: 10.1016/j.bbagen.2017.10.007. Epub 2017 Oct 12.

PMID:
29031766
38.

Proteogenomics in Aid of Host-Pathogen Interaction Studies: A Bacterial Perspective.

Fels U, Gevaert K, Van Damme P.

Proteomes. 2017 Oct 11;5(4). pii: E26. doi: 10.3390/proteomes5040026. Review.

39.

Gold nanodome SERS platform for label-free detection of protease activity.

Wuytens PC, Demol H, Turk N, Gevaert K, Skirtach AG, Lamkanfi M, Baets R.

Faraday Discuss. 2017 Dec 4;205:345-361. doi: 10.1039/c7fd00124j.

PMID:
28920115
40.

Ectopic application of the repressive histone modification H3K9me2 establishes post-zygotic reproductive isolation in Arabidopsis thaliana.

Jiang H, Moreno-Romero J, Santos-González J, De Jaeger G, Gevaert K, Van De Slijke E, Köhler C.

Genes Dev. 2017 Jun 15;31(12):1272-1287. doi: 10.1101/gad.299347.117. Epub 2017 Jul 25.

41.

Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP.

Contreras-Martos S, Piai A, Kosol S, Varadi M, Bekesi A, Lebrun P, Volkov AN, Gevaert K, Pierattelli R, Felli IC, Tompa P.

Sci Rep. 2017 Jul 5;7(1):4676. doi: 10.1038/s41598-017-04611-x.

42.

Drugging the catalytically inactive state of RET kinase in RET-rearranged tumors.

Plenker D, Riedel M, Brägelmann J, Dammert MA, Chauhan R, Knowles PP, Lorenz C, Keul M, Bührmann M, Pagel O, Tischler V, Scheel AH, Schütte D, Song Y, Stark J, Mrugalla F, Alber Y, Richters A, Engel J, Leenders F, Heuckmann JM, Wolf J, Diebold J, Pall G, Peifer M, Aerts M, Gevaert K, Zahedi RP, Buettner R, Shokat KM, McDonald NQ, Kast SM, Gautschi O, Thomas RK, Sos ML.

Sci Transl Med. 2017 Jun 14;9(394). pii: eaah6144. doi: 10.1126/scitranslmed.aah6144.

43.

Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research.

Vergauwen G, Dhondt B, Van Deun J, De Smedt E, Berx G, Timmerman E, Gevaert K, Miinalainen I, Cocquyt V, Braems G, Van den Broecke R, Denys H, De Wever O, Hendrix A.

Sci Rep. 2017 Jun 2;7(1):2704. doi: 10.1038/s41598-017-02599-y.

44.

Strigolactones, karrikins and beyond.

De Cuyper C, Struk S, Braem L, Gevaert K, De Jaeger G, Goormachtig S.

Plant Cell Environ. 2017 Sep;40(9):1691-1703. doi: 10.1111/pce.12996. Epub 2017 Jul 5. Review.

PMID:
28558130
45.

Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products.

Verheggen K, Volders PJ, Mestdagh P, Menschaert G, Van Damme P, Gevaert K, Martens L, Vandesompele J.

J Proteome Res. 2017 Jul 7;16(7):2508-2515. doi: 10.1021/acs.jproteome.7b00085. Epub 2017 Jun 5.

PMID:
28534634
46.

The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Vanden Bossche R, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Gevaert K, De Jaeger G, Vandepoele K, Pauwels L, Goossens A.

Nat Commun. 2017 May 11;8:15235. doi: 10.1038/ncomms15235. Erratum in: Nat Commun. 2018 Apr 10;9:16213.

47.

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana.

Willems P, Ndah E, Jonckheere V, Stael S, Sticker A, Martens L, Van Breusegem F, Gevaert K, Van Damme P.

Mol Cell Proteomics. 2017 Jun;16(6):1064-1080. doi: 10.1074/mcp.M116.066662. Epub 2017 Apr 21.

48.

Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob.

Goeminne LJE, Gevaert K, Clement L.

J Proteomics. 2018 Jan 16;171:23-36. doi: 10.1016/j.jprot.2017.04.004. Epub 2017 Apr 5.

PMID:
28391044
49.

Expanding the Interactome of TES by Exploiting TES Modules with Different Subcellular Localizations.

Sala S, Van Troys M, Medves S, Catillon M, Timmerman E, Staes A, Schaffner-Reckinger E, Gevaert K, Ampe C.

J Proteome Res. 2017 May 5;16(5):2054-2071. doi: 10.1021/acs.jproteome.7b00034. Epub 2017 Apr 20.

PMID:
28378594
50.

Analyzing trapped protein complexes by Virotrap and SFINX.

Titeca K, Van Quickelberghe E, Samyn N, De Sutter D, Verhee A, Gevaert K, Tavernier J, Eyckerman S.

Nat Protoc. 2017 May;12(5):881-898. doi: 10.1038/nprot.2017.014. Epub 2017 Mar 30.

PMID:
28358392

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