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Items: 1 to 50 of 218

1.

Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element.

Firth AE, Wills NM, Gesteland RF, Atkins JF.

Nucleic Acids Res. 2011 Aug;39(15):6679-91. doi: 10.1093/nar/gkr224. Epub 2011 Apr 27.

2.

Translational bypassing without peptidyl-tRNA anticodon scanning of coding gap mRNA.

Wills NM, O'Connor M, Nelson CC, Rettberg CC, Huang WM, Gesteland RF, Atkins JF.

EMBO J. 2008 Oct 8;27(19):2533-44. doi: 10.1038/emboj.2008.170. Epub 2008 Sep 4.

3.

Assessment of the influence of cognition and cognitive processing speed on three tests of olfaction.

Dulay MF, Gesteland RC, Shear PK, Ritchey PN, Frank RA.

J Clin Exp Neuropsychol. 2008 Apr;30(3):327-37. Epub 2007 Jul 25.

PMID:
17852612
4.

The selenium-rich C-terminal domain of mouse selenoprotein P is necessary for the supply of selenium to brain and testis but not for the maintenance of whole body selenium.

Hill KE, Zhou J, Austin LM, Motley AK, Ham AJ, Olson GE, Atkins JF, Gesteland RF, Burk RF.

J Biol Chem. 2007 Apr 13;282(15):10972-80. Epub 2007 Feb 20.

5.

Novel antizyme gene in Danio rerio expressed in brain and retina.

Ivanov IP, Pittman AJ, Chien CB, Gesteland RF, Atkins JF.

Gene. 2007 Jan 31;387(1-2):87-92. Epub 2006 Aug 30.

PMID:
17049757
6.

Polyamine analogs with xylene rings induce antizyme frameshifting, reduce ODC activity, and deplete cellular polyamines.

Petros LM, Graminski GF, Robinson S, Burns MR, Kisiel N, Gesteland RF, Atkins JF, Kramer DL, Howard MT, Weeks RS.

J Biochem. 2006 Nov;140(5):657-66. Epub 2006 Sep 23.

PMID:
16998202
8.

Characterization of the sniff magnitude test.

Frank RA, Gesteland RC, Bailie J, Rybalsky K, Seiden A, Dulay MF.

Arch Otolaryngol Head Neck Surg. 2006 May;132(5):532-6.

PMID:
16702570
10.

A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene.

Wills NM, Moore B, Hammer A, Gesteland RF, Atkins JF.

J Biol Chem. 2006 Mar 17;281(11):7082-8. Epub 2006 Jan 5.

11.

Neuronal chloride accumulation in olfactory epithelium of mice lacking NKCC1.

Nickell WT, Kleene NK, Gesteland RC, Kleene SJ.

J Neurophysiol. 2006 Mar;95(3):2003-6. Epub 2005 Nov 30.

12.

Polyamine sensing during antizyme mRNA programmed frameshifting.

Petros LM, Howard MT, Gesteland RF, Atkins JF.

Biochem Biophys Res Commun. 2005 Dec 23;338(3):1478-89. Epub 2005 Oct 27.

PMID:
16269132
13.
14.

Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression.

Baranov PV, Hammer AW, Zhou J, Gesteland RF, Atkins JF.

Genome Biol. 2005;6(3):R25. Epub 2005 Feb 15.

15.

Programmed ribosomal frameshifting in decoding the SARS-CoV genome.

Baranov PV, Henderson CM, Anderson CB, Gesteland RF, Atkins JF, Howard MT.

Virology. 2005 Feb 20;332(2):498-510.

17.
18.
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20.

-1 frameshifting at a CGA AAG hexanucleotide site is required for transposition of insertion sequence IS1222.

Mejlhede N, Licznar P, Prère MF, Wills NM, Gesteland RF, Atkins JF, Fayet O.

J Bacteriol. 2004 May;186(10):3274-7.

21.

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome.

Matveeva OV, Foley BT, Nemtsov VA, Gesteland RF, Matsufuji S, Atkins JF, Ogurtsov AY, Shabalina SA.

BMC Bioinformatics. 2004 Apr 29;5:44.

22.

Readthrough of dystrophin stop codon mutations induced by aminoglycosides.

Howard MT, Anderson CB, Fass U, Khatri S, Gesteland RF, Atkins JF, Flanigan KM.

Ann Neurol. 2004 Mar;55(3):422-6.

PMID:
14991821
23.

P-site tRNA is a crucial initiator of ribosomal frameshifting.

Baranov PV, Gesteland RF, Atkins JF.

RNA. 2004 Feb;10(2):221-30. Review.

24.

Factors that influence selection of coding resumption sites in translational bypassing: minimal conventional peptidyl-tRNA:mRNA pairing can suffice.

Herr AJ, Wills NM, Nelson CC, Gesteland RF, Atkins JF.

J Biol Chem. 2004 Mar 19;279(12):11081-7. Epub 2004 Jan 5.

25.

Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

Gurvich OL, Baranov PV, Zhou J, Hammer AW, Gesteland RF, Atkins JF.

EMBO J. 2003 Nov 3;22(21):5941-50.

26.

Programmed translational -1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs.

Licznar P, Mejlhede N, Prère MF, Wills N, Gesteland RF, Atkins JF, Fayet O.

EMBO J. 2003 Sep 15;22(18):4770-8.

27.

Thermodynamic criteria for high hit rate antisense oligonucleotide design.

Matveeva OV, Mathews DH, Tsodikov AD, Shabalina SA, Gesteland RF, Atkins JF, Freier SM.

Nucleic Acids Res. 2003 Sep 1;31(17):4989-94.

28.

Thermodynamic calculations and statistical correlations for oligo-probes design.

Matveeva OV, Shabalina SA, Nemtsov VA, Tsodikov AD, Gesteland RF, Atkins JF.

Nucleic Acids Res. 2003 Jul 15;31(14):4211-7.

29.

Overriding standard decoding: implications of recoding for ribosome function and enrichment of gene expression.

Atkins JF, Baranov PV, Fayet O, Herr AJ, Howard MT, Ivanov IP, Matsufuji S, Miller WA, Moore B, Prère MF, Wills NM, Zhou J, Gesteland RF.

Cold Spring Harb Symp Quant Biol. 2001;66:217-32. Review. No abstract available.

PMID:
12762024
30.

Maintenance of the correct open reading frame by the ribosome.

Hansen TM, Baranov PV, Ivanov IP, Gesteland RF, Atkins JF.

EMBO Rep. 2003 May;4(5):499-504.

31.

Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes.

Buchanan MV, Larimer FW, Wiley HS, Kennel SJ, Squier TJ, Ramsey JM, Rodland KD, Hurst GB, Smith RD, Xu Y, Dixon D, Doktycz MJ, Colson S, Gesteland R, Giometti C, Young M, Giddings M.

OMICS. 2002;6(4):287-303.

PMID:
12630408
32.

Assessment of the Sniff Magnitude Test as a clinical test of olfactory function.

Frank RA, Dulay MF, Gesteland RC.

Physiol Behav. 2003 Feb;78(2):195-204.

PMID:
12576116
33.

Deletion of selenoprotein P alters distribution of selenium in the mouse.

Hill KE, Zhou J, McMahan WJ, Motley AK, Atkins JF, Gesteland RF, Burk RF.

J Biol Chem. 2003 Apr 18;278(16):13640-6. Epub 2003 Feb 6.

34.

RECODE 2003.

Baranov PV, Gurvich OL, Hammer AW, Gesteland RF, Atkins JF.

Nucleic Acids Res. 2003 Jan 1;31(1):87-9.

35.

Genome-based peptide fingerprint scanning.

Giddings MC, Shah AA, Gesteland R, Moore B.

Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):20-5. Epub 2002 Dec 23.

36.

Artificial neural network prediction of antisense oligodeoxynucleotide activity.

Giddings MC, Shah AA, Freier S, Atkins JF, Gesteland RF, Matveeva OV.

Nucleic Acids Res. 2002 Oct 1;30(19):4295-304.

38.

Computational identification of putative programmed translational frameshift sites.

Shah AA, Giddings MC, Parvaz JB, Gesteland RF, Atkins JF, Ivanov IP.

Bioinformatics. 2002 Aug;18(8):1046-53.

PMID:
12176827
39.

Biochemistry. The 22nd amino acid.

Atkins JF, Gesteland R.

Science. 2002 May 24;296(5572):1409-10. No abstract available.

PMID:
12029118
40.

Recoding: translational bifurcations in gene expression.

Baranov PV, Gesteland RF, Atkins JF.

Gene. 2002 Mar 20;286(2):187-201. Review.

PMID:
11943474
41.

Release factor 2 frameshifting sites in different bacteria.

Baranov PV, Gesteland RF, Atkins JF.

EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15.

42.
43.

Cell culture analysis of the regulatory frameshift event required for the expression of mammalian antizymes.

Howard MT, Shirts BH, Zhou J, Carlson CL, Matsufuji S, Gesteland RF, Weeks RS, Atkins JF.

Genes Cells. 2001 Nov;6(11):931-41.

44.

mRNA readout at 40.

Atkins JF, Gesteland RF.

Nature. 2001 Dec 13;414(6865):693. No abstract available.

PMID:
11742372
45.

Drop-off during ribosome hopping.

Herr AJ, Wills NM, Nelson CC, Gesteland RF, Atkins JF.

J Mol Biol. 2001 Aug 17;311(3):445-52.

PMID:
11492998
46.

Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

Herr AJ, Nelson CC, Wills NM, Gesteland RF, Atkins JF.

J Mol Biol. 2001 Jun 22;309(5):1029-48.

PMID:
11399077
47.

Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.

Felden B, Massire C, Westhof E, Atkins JF, Gesteland RF.

Nucleic Acids Res. 2001 Apr 1;29(7):1602-7.

48.

ODNBase--a web database for antisense oligonucleotide effectiveness studies. Oligodeoxynucleotides.

Giddings MC, Matveeva OV, Atkins JF, Gesteland RF.

Bioinformatics. 2000 Sep;16(9):843-4.

PMID:
11108708
49.

The twenty-first amino acid.

Atkins JF, Gesteland RF.

Nature. 2000 Sep 28;407(6803):463, 465. No abstract available.

PMID:
11028985
50.

Decoding of tandem quadruplets by adjacent tRNAs with eight-base anticodon loops.

Moore B, Nelson CC, Persson BC, Gesteland RF, Atkins JF.

Nucleic Acids Res. 2000 Sep 15;28(18):3615-24.

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