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Items: 16

1.

Scanning Quadrupole Data-Independent Acquisition, Part B: Application to the Analysis of the Calcineurin-Interacting Proteins during Treatment of Aspergillus fumigatus with Azole and Echinocandin Antifungal Drugs.

Juvvadi PR, Moseley MA, Hughes CJ, Soderblom EJ, Lennon S, Perkins SR, Thompson JW, Geromanos SJ, Wildgoose J, Richardson K, Langridge JI, Vissers JPC, Steinbach WJ.

J Proteome Res. 2018 Feb 2;17(2):780-793. doi: 10.1021/acs.jproteome.7b00499. Epub 2017 Dec 29.

2.

Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach.

Kumar K, Srinivasan P, Nold MJ, Moch JK, Reiter K, Sturdevant D, Otto TD, Squires RB, Herrera R, Nagarajan V, Rayner JC, Porcella SF, Geromanos SJ, Haynes JD, Narum DL.

Sci Rep. 2017 Dec 7;7(1):17146. doi: 10.1038/s41598-017-17505-9.

3.

Scanning Quadrupole Data-Independent Acquisition, Part A: Qualitative and Quantitative Characterization.

Moseley MA, Hughes CJ, Juvvadi PR, Soderblom EJ, Lennon S, Perkins SR, Thompson JW, Steinbach WJ, Geromanos SJ, Wildgoose J, Langridge JI, Richardson K, Vissers JPC.

J Proteome Res. 2018 Feb 2;17(2):770-779. doi: 10.1021/acs.jproteome.7b00464. Epub 2017 Dec 29.

PMID:
28901143
4.

Multi-mode acquisition (MMA): An MS/MS acquisition strategy for maximizing selectivity, specificity and sensitivity of DIA product ion spectra.

Williams BJ, Ciavarini SJ, Devlin C, Cohn SM, Xie R, Vissers JP, Martin LB, Caswell A, Langridge JI, Geromanos SJ.

Proteomics. 2016 Aug;16(15-16):2284-301. doi: 10.1002/pmic.201500492.

PMID:
27296928
5.

A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information.

Benjamin AM, Thompson JW, Soderblom EJ, Geromanos SJ, Henao R, Kraus VB, Moseley MA, Lucas JE.

BMC Bioinformatics. 2013 Dec 16;14:364. doi: 10.1186/1471-2105-14-364.

6.

Design and application of a data-independent precursor and product ion repository.

Thalassinos K, Vissers JP, Tenzer S, Levin Y, Thompson JW, Daniel D, Mann D, DeLong MR, Moseley MA, America AH, Ottens AK, Cavey GS, Efstathiou G, Scrivens JH, Langridge JI, Geromanos SJ.

J Am Soc Mass Spectrom. 2012 Oct;23(10):1808-20. Epub 2012 Jul 31.

PMID:
22847389
7.

Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samples.

Geromanos SJ, Hughes C, Ciavarini S, Vissers JP, Langridge JI.

Anal Bioanal Chem. 2012 Sep;404(4):1127-39. doi: 10.1007/s00216-012-6197-y. Epub 2012 Jul 19.

PMID:
22811061
8.

Software for quantitative proteomic analysis using stable isotope labeling and data independent acquisition.

Huang X, Liu M, Nold MJ, Tian C, Fu K, Zheng J, Geromanos SJ, Ding SJ.

Anal Chem. 2011 Sep 15;83(18):6971-9. doi: 10.1021/ac201555m. Epub 2011 Aug 23.

PMID:
21834580
9.

Simulating and validating proteomics data and search results.

Geromanos SJ, Hughes C, Golick D, Ciavarini S, Gorenstein MV, Richardson K, Hoyes JB, Vissers JP, Langridge JI.

Proteomics. 2011 Mar;11(6):1189-211. doi: 10.1002/pmic.201000576. Epub 2011 Feb 7.

PMID:
21298790
10.

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures.

Li GZ, Vissers JP, Silva JC, Golick D, Gorenstein MV, Geromanos SJ.

Proteomics. 2009 Mar;9(6):1696-719. doi: 10.1002/pmic.200800564.

PMID:
19294629
11.

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

Geromanos SJ, Vissers JP, Silva JC, Dorschel CA, Li GZ, Gorenstein MV, Bateman RH, Langridge JI.

Proteomics. 2009 Mar;9(6):1683-95. doi: 10.1002/pmic.200800562.

PMID:
19294628
12.

Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum.

Gilar M, Olivova P, Chakraborty AB, Jaworski A, Geromanos SJ, Gebler JC.

Electrophoresis. 2009 Apr;30(7):1157-67. doi: 10.1002/elps.200800630.

PMID:
19283699
13.

The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium.

Vissers JP, Pons S, Hulin A, Tissier R, Berdeaux A, Connolly JB, Langridge JI, Geromanos SJ, Ghaleh B.

J Chromatogr B Analyt Technol Biomed Life Sci. 2009 May 1;877(13):1317-26. doi: 10.1016/j.jchromb.2008.10.024. Epub 2008 Nov 1.

14.

Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet tale.

Silva JC, Denny R, Dorschel C, Gorenstein MV, Li GZ, Richardson K, Wall D, Geromanos SJ.

Mol Cell Proteomics. 2006 Apr;5(4):589-607. Epub 2006 Jan 5.

15.

Quantitative proteomic analysis of drug-induced changes in mycobacteria.

Hughes MA, Silva JC, Geromanos SJ, Townsend CA.

J Proteome Res. 2006 Jan;5(1):54-63.

PMID:
16396495
16.

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition.

Silva JC, Gorenstein MV, Li GZ, Vissers JP, Geromanos SJ.

Mol Cell Proteomics. 2006 Jan;5(1):144-56. Epub 2005 Oct 11.

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