Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 169

1.

PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.

Kubota KA, Wolfgang WJ, Baker DJ, Boxrud D, Turner L, Trees E, Carleton HA, Gerner-Smidt P.

Public Health Rep. 2019 Nov/Dec;134(2_suppl):22S-28S. doi: 10.1177/0033354919881650.

PMID:
31682558
2.

Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases.

Gerner-Smidt P, Besser J, Concepción-Acevedo J, Folster JP, Huffman J, Joseph LA, Kucerova Z, Nichols MC, Schwensohn CA, Tolar B.

Front Public Health. 2019 Jun 27;7:172. doi: 10.3389/fpubh.2019.00172. eCollection 2019. Review.

3.

Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.

Besser JM, Carleton HA, Trees E, Stroika SG, Hise K, Wise M, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):504-512. doi: 10.1089/fpd.2019.2650. Epub 2019 Jun 27.

4.

PulseNet: Entering the Age of Next-Generation Sequencing.

Ribot EM, Freeman M, Hise KB, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):451-456. doi: 10.1089/fpd.2019.2634. Epub 2019 Jun 26.

5.

Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States.

Brown E, Dessai U, McGarry S, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):441-450. doi: 10.1089/fpd.2019.2662. Epub 2019 Jun 13.

6.

Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.

Carleton HA, Besser J, Williams-Newkirk AJ, Huang A, Trees E, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):474-479. doi: 10.1089/fpd.2019.2636. Epub 2019 Jun 6.

7.

An Overview of PulseNet USA Databases.

Tolar B, Joseph LA, Schroeder MN, Stroika S, Ribot EM, Hise KB, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):457-462. doi: 10.1089/fpd.2019.2637. Epub 2019 May 8.

8.

The use of next generation sequencing for improving food safety: Translation into practice.

Jagadeesan B, Gerner-Smidt P, Allard MW, Leuillet S, Winkler A, Xiao Y, Chaffron S, Van Der Vossen J, Tang S, Katase M, McClure P, Kimura B, Ching Chai L, Chapman J, Grant K.

Food Microbiol. 2019 Jun;79:96-115. doi: 10.1016/j.fm.2018.11.005. Epub 2018 Nov 17. Review.

9.

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.

Henri C, Leekitcharoenphon P, Carleton HA, Radomski N, Kaas RS, Mariet JF, Felten A, Aarestrup FM, Gerner Smidt P, Roussel S, Guillier L, Mistou MY, Hendriksen RS.

Front Microbiol. 2017 Nov 29;8:2351. doi: 10.3389/fmicb.2017.02351. eCollection 2017.

10.

Next-generation sequencing technologies and their application to the study and control of bacterial infections.

Besser J, Carleton HA, Gerner-Smidt P, Lindsey RL, Trees E.

Clin Microbiol Infect. 2018 Apr;24(4):335-341. doi: 10.1016/j.cmi.2017.10.013. Epub 2017 Oct 23. Review.

11.

PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.

Nadon C, Van Walle I, Gerner-Smidt P, Campos J, Chinen I, Concepcion-Acevedo J, Gilpin B, Smith AM, Man Kam K, Perez E, Trees E, Kubota K, Takkinen J, Nielsen EM, Carleton H; FWD-NEXT Expert Panel.

Euro Surveill. 2017 Jun 8;22(23). pii: 30544. doi: 10.2807/1560-7917.ES.2017.22.23.30544. Review.

12.

Multistate Outbreak of Escherichia coli O157:H7 Infections Associated with Consumption of Fresh Spinach: United States, 2006.

Sharapov UM, Wendel AM, Davis JP, Keene WE, Farrar J, Sodha S, Hyytia-Trees E, Leeper M, Gerner-Smidt P, Griffin PM, Braden C; OUTBREAK INVESTIGATION TEAM.

J Food Prot. 2016 Dec;79(12):2024-2030. doi: 10.4315/0362-028X.JFP-15-556.

PMID:
28221950
13.

Urbanized White Ibises (Eudocimus albus) as Carriers of Salmonella enterica of Significance to Public Health and Wildlife.

Hernandez SM, Welch CN, Peters VE, Lipp EK, Curry S, Yabsley MJ, Sanchez S, Presotto A, Gerner-Smidt P, Hise KB, Hammond E, Kistler WM, Madden M, Conway AL, Kwan T, Maurer JJ.

PLoS One. 2016 Oct 21;11(10):e0164402. doi: 10.1371/journal.pone.0164402. eCollection 2016.

14.

Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.

Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjman M, Walker M, Stroika S, Cantinelli T, Chenal-Francisque V, Kucerova Z, Rocha EP, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S.

Nat Microbiol. 2016 Oct 10;2:16185. doi: 10.1038/nmicrobiol.2016.185.

15.

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.

Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, Fields A, Wise M, Tillman G, Defibaugh-Chavez S, Kucerova Z, Sabol A, Roache K, Trees E, Simmons M, Wasilenko J, Kubota K, Pouseele H, Klimke W, Besser J, Brown E, Allard M, Gerner-Smidt P.

Clin Infect Dis. 2016 Aug 1;63(3):380-6. doi: 10.1093/cid/ciw242. Epub 2016 Apr 18.

16.

Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.

Timmons C, Trees E, Ribot EM, Gerner-Smidt P, LaFon P, Im S, Ma LM.

J Microbiol Methods. 2016 Jun;125:70-80. doi: 10.1016/j.mimet.2016.04.005. Epub 2016 Apr 9.

17.

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.

Lindsey RL, Knipe K, Rowe L, Garcia-Toledo L, Loparev V, Juieng P, Trees E, Strockbine N, Stripling D, Gerner-Smidt P.

Genome Announc. 2015 Dec 17;3(6). pii: e01496-15. doi: 10.1128/genomeA.01496-15.

18.

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7.

Griffing SM, MacCannell DR, Schmidtke AJ, Freeman MM, Hyytiä-Trees E, Gerner-Smidt P, Ribot EM, Bono JL.

PLoS One. 2015 Jul 1;10(7):e0131967. doi: 10.1371/journal.pone.0131967. eCollection 2015.

19.

Diversity and Persistence of Salmonella enterica Strains in Rural Landscapes in the Southeastern United States.

Maurer JJ, Martin G, Hernandez S, Cheng Y, Gerner-Smidt P, Hise KB, Tobin D'Angelo M, Cole D, Sanchez S, Madden M, Valeika S, Presotto A, Lipp EK.

PLoS One. 2015 Jul 1;10(7):e0128937. doi: 10.1371/journal.pone.0128937. eCollection 2015.

20.

Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.

Trees E, Strockbine N, Changayil S, Ranganathan S, Zhao K, Weil R, MacCannell D, Sabol A, Schmidtke A, Martin H, Stripling D, Ribot EM, Gerner-Smidt P.

Genome Announc. 2014 Aug 7;2(4). pii: e00718-14. doi: 10.1128/genomeA.00718-14.

21.

Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.

Lindsey RL, Trees E, Sammons S, Loparev V, Frace M, Strockbine N, Sabol AL, Sowers E, Stripling D, Martin H, Knipe K, Rowe L, Gerner-Smidt P.

Genome Announc. 2014 Jul 10;2(4). pii: e00501-14. doi: 10.1128/genomeA.00501-14.

22.

What's your subtype? The epidemiologic utility of bacterial whole-genome sequencing.

Sandora TJ, Gerner-Smidt P, McAdam AJ.

Clin Chem. 2014 Apr;60(4):586-8. doi: 10.1373/clinchem.2013.217141. Epub 2014 Jan 7. No abstract available.

23.

Seroepidemiologic survey of epidemic cholera in Haiti to assess spectrum of illness and risk factors for severe disease.

Jackson BR, Talkington DF, Pruckler JM, Fouché MDB, Lafosse E, Nygren B, Gómez GA, Dahourou GA, Archer WR, Payne AB, Hooper WC, Tappero JW, Derado G, Magloire R, Gerner-Smidt P, Freeman N, Boncy J, Mintz ED, The Cholera Serosurvey Working Group.

Am J Trop Med Hyg. 2013 Oct;89(4):654-664. doi: 10.4269/ajtmh.13-0208.

24.

Development and application of MLVA methods as a tool for inter-laboratory surveillance.

Nadon CA, Trees E, Ng LK, Møller Nielsen E, Reimer A, Maxwell N, Kubota KA, Gerner-Smidt P; MLVA Harmonization Working Group.

Euro Surveill. 2013 Aug 29;18(35):20565. Review.

25.

A challenge and an opportunity to improve patient management and public health surveillance for food-borne infections through culture-independent diagnostics.

Atkinson R, Maguire H, Gerner-Smidt P.

J Clin Microbiol. 2013 Aug;51(8):2479-82. doi: 10.1128/JCM.00253-13. Epub 2013 Mar 20. No abstract available.

26.

Novel epidemic clones of Listeria monocytogenes, United States, 2011.

Lomonaco S, Verghese B, Gerner-Smidt P, Tarr C, Gladney L, Joseph L, Katz L, Turnsek M, Frace M, Chen Y, Brown E, Meinersmann R, Berrang M, Knabel S.

Emerg Infect Dis. 2013 Jan;19(1):147-50. doi: 10.3201/eid1901.121167.

27.

Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response.

Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D, Hendriksen RS, Hewson R, Heymann DL, Johansson K, Ijaz K, Keim PS, Koopmans M, Kroneman A, Lo Fo Wong D, Lund O, Palm D, Sawanpanyalert P, Sobel J, Schlundt J.

Emerg Infect Dis. 2012 Nov;18(11):e1. doi: 10.3201/eid/1811.120453.

28.

Epidemiology of a Salmonella enterica subsp. enterica serovar Typhimurium strain associated with a songbird outbreak.

Hernandez SM, Keel K, Sanchez S, Trees E, Gerner-Smidt P, Adams JK, Cheng Y, Ray A 3rd, Martin G, Presotto A, Ruder MG, Brown J, Blehert DS, Cottrell W, Maurer JJ.

Appl Environ Microbiol. 2012 Oct;78(20):7290-8. Epub 2012 Aug 10.

29.

Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US.

Laksanalamai P, Joseph LA, Silk BJ, Burall LS, L Tarr C, Gerner-Smidt P, Datta AR.

PLoS One. 2012;7(7):e42448. doi: 10.1371/journal.pone.0042448. Epub 2012 Jul 31.

30.

Outbreak of salmonellosis linked to live poultry from a mail-order hatchery.

Gaffga NH, Barton Behravesh C, Ettestad PJ, Smelser CB, Rhorer AR, Cronquist AB, Comstock NA, Bidol SA, Patel NJ, Gerner-Smidt P, Keene WE, Gomez TM, Hopkins BA, Sotir MJ, Angulo FJ.

N Engl J Med. 2012 May 31;366(22):2065-73. doi: 10.1056/NEJMoa1111818.

31.

Standardization and international multicenter validation of a PulseNet pulsed-field gel electrophoresis protocol for subtyping Shigella flexneri isolates.

Pichel M, Brengi SP, Cooper KL, Ribot EM, Al-Busaidy S, Araya P, Fernández J, Vaz TI, Kam KM, Morcos M, Nielsen EM, Nadon C, Pimentel G, Pérez-Gutiérrez E, Gerner-Smidt P, Binsztein N; Shigella flexneri PulseNet PFGE Protocol Working Group.

Foodborne Pathog Dis. 2012 May;9(5):418-24. doi: 10.1089/fpd.2011.1067. Epub 2012 Apr 16.

PMID:
22506731
32.

Nonculture diagnostic tests for enteric diseases.

Jones TF, Gerner-Smidt P.

Emerg Infect Dis. 2012 Mar;18(3):513-4. doi: 10.3201/eid1803.111914.

33.

Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans.

Bono JL, Smith TP, Keen JE, Harhay GP, McDaneld TG, Mandrell RE, Jung WK, Besser TE, Gerner-Smidt P, Bielaszewska M, Karch H, Clawson ML.

Mol Biol Evol. 2012 Aug;29(8):2047-62. doi: 10.1093/molbev/mss072. Epub 2012 Feb 21.

34.

Characterization of toxigenic Vibrio cholerae from Haiti, 2010-2011.

Talkington D, Bopp C, Tarr C, Parsons MB, Dahourou G, Freeman M, Joyce K, Turnsek M, Garrett N, Humphrys M, Gomez G, Stroika S, Boncy J, Ochieng B, Oundo J, Klena J, Smith A, Keddy K, Gerner-Smidt P.

Emerg Infect Dis. 2011 Nov;17(11):2122-9. doi: 10.3201/eid1711.110805.

35.

Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.

Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P; V. cholerae Outbreak Genomics Task Force.

Emerg Infect Dis. 2011 Nov;17(11):2113-21. doi: 10.3201/eid1711.110794.

36.

Global Distribution of Shigella sonnei Clones.

Filliol-Toutain I, Chiou CS, Mammina C, Gerner-Smidt P, Thong KL, Phung DC, Pichel M, Ranjbar R, Sow AG, Cooper K, Ribot E, Binsztein N, Liang SY.

Emerg Infect Dis. 2011 Oct;17(10):1910-2. doi: 10.3201/eid1710.101486.

37.

Salmonella typhimurium infections associated with peanut products.

Cavallaro E, Date K, Medus C, Meyer S, Miller B, Kim C, Nowicki S, Cosgrove S, Sweat D, Phan Q, Flint J, Daly ER, Adams J, Hyytia-Trees E, Gerner-Smidt P, Hoekstra RM, Schwensohn C, Langer A, Sodha SV, Rogers MC, Angulo FJ, Tauxe RV, Williams IT, Behravesh CB; Salmonella Typhimurium Outbreak Investigation Team.

N Engl J Med. 2011 Aug 18;365(7):601-10. doi: 10.1056/NEJMoa1011208.

38.

Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).

Liu F, Kariyawasam S, Jayarao BM, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ, Dudley EG.

Appl Environ Microbiol. 2011 Jul;77(13):4520-6. doi: 10.1128/AEM.00468-11. Epub 2011 May 13.

39.

2008 outbreak of Salmonella Saintpaul infections associated with raw produce.

Barton Behravesh C, Mody RK, Jungk J, Gaul L, Redd JT, Chen S, Cosgrove S, Hedican E, Sweat D, Chávez-Hauser L, Snow SL, Hanson H, Nguyen TA, Sodha SV, Boore AL, Russo E, Mikoleit M, Theobald L, Gerner-Smidt P, Hoekstra RM, Angulo FJ, Swerdlow DL, Tauxe RV, Griffin PM, Williams IT; Salmonella Saintpaul Outbreak Investigation Team.

N Engl J Med. 2011 Mar 10;364(10):918-27. doi: 10.1056/NEJMoa1005741. Epub 2011 Feb 23.

40.

Novel virulence gene and clustered regularly interspaced short palindromic repeat (CRISPR) multilocus sequence typing scheme for subtyping of the major serovars of Salmonella enterica subsp. enterica.

Liu F, Barrangou R, Gerner-Smidt P, Ribot EM, Knabel SJ, Dudley EG.

Appl Environ Microbiol. 2011 Mar;77(6):1946-56. doi: 10.1128/AEM.02625-10. Epub 2011 Jan 28.

41.

Foodborne disease trends and reports.

Gerner-Smidt P, Whichard JM.

Foodborne Pathog Dis. 2010 Jun;7(6):609-11. doi: 10.1089/fpd.2010.9998. No abstract available.

PMID:
20518696
42.

Survival and growth of Salmonella in salsa and related ingredients.

Ma L, Zhang G, Gerner-Smidt P, Tauxe RV, Doyle MP.

J Food Prot. 2010 Mar;73(3):434-44.

PMID:
20202327
43.

Recommendations for diagnosis of shiga toxin--producing Escherichia coli infections by clinical laboratories.

Gould LH, Bopp C, Strockbine N, Atkinson R, Baselski V, Body B, Carey R, Crandall C, Hurd S, Kaplan R, Neill M, Shea S, Somsel P, Tobin-D'Angelo M, Griffin PM, Gerner-Smidt P; Centers for Disease Control and Prevention (CDC).

MMWR Recomm Rep. 2009 Oct 16;58(RR-12):1-14.

44.

Foodborne disease trends and reports.

Gerner-Smidt P, Whichard JM.

Foodborne Pathog Dis. 2009 Sep;6(7):749-51. doi: 10.1089/fpd.2009.9997. No abstract available.

PMID:
19737054
45.

Thermal inactivation of Salmonella in peanut butter.

Ma L, Zhang G, Gerner-Smidt P, Mantripragada V, Ezeoke I, Doyle MP.

J Food Prot. 2009 Aug;72(8):1596-601.

PMID:
19722389
46.

Pulsed-field gel electrophoresis subtypes of shiga toxin-producing Escherichia coli O157 isolated from ground beef and humans, United States, 2001-2006.

Lanier WA, Leeper MM, Smith KE, Tillman GE, Holt KG, Gerner-Smidt P.

Foodborne Pathog Dis. 2009 Nov;6(9):1075-82. doi: 10.1089/fpd.2009.0269.

PMID:
19630512
47.

Sources of outbreaks of foodborne infections in different regions of the world.

Gerner-Smidt P, Whichard JM.

Foodborne Pathog Dis. 2009 Jun;6(5):523-4. doi: 10.1089/fpd.2009.9998. No abstract available.

PMID:
19534592
48.

Foodborne disease trends and reports.

Gerner-Smidt P, Whichard JM.

Foodborne Pathog Dis. 2009 Apr;6(3):261-4. doi: 10.1089/fpd.2009.9999. No abstract available.

PMID:
19278344
49.

Foodborne disease trends and reports.

Gerner-Smidt P, Whichard JM.

Foodborne Pathog Dis. 2009 Jan-Feb;6(1):1-5. doi: 10.1089/fpd.2008.9990. No abstract available.

PMID:
19182964
50.

Foodborne disease trends and reports.

Gerner-Smidt P, Whichard JM.

Foodborne Pathog Dis. 2008 Dec;5(6):703-7. doi: 10.1089/fpd.2008.9991. No abstract available.

PMID:
19086803

Supplemental Content

Loading ...
Support Center