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Simultaneous outbreaks of respiratory disease in wild chimpanzees caused by distinct viruses of human origin.

Negrey JD, Reddy RB, Scully EJ, Phillips-Garcia S, Owens LA, Langergraber KE, Mitani JC, Emery Thompson M, Wrangham RW, Muller MN, Otali E, Machanda Z, Hyeroba D, Grindle KA, Pappas TE, Palmenberg AC, Gern JE, Goldberg TL.

Emerg Microbes Infect. 2019;8(1):139-149. doi: 10.1080/22221751.2018.1563456.


Rhinoviruses and Their Receptors.

Basnet S, Palmenberg AC, Gern JE.

Chest. 2019 Jan 17. pii: S0012-3692(19)30003-0. doi: 10.1016/j.chest.2018.12.012. [Epub ahead of print] Review.


Association between rhinovirus species and nasopharyngeal microbiota in infants with severe bronchiolitis.

Toivonen L, Camargo CA Jr, Gern JE, Bochkov YA, Mansbach JM, Piedra PA, Hasegawa K.

J Allergy Clin Immunol. 2019 Jan 14. pii: S0091-6749(19)30021-1. doi: 10.1016/j.jaci.2018.12.1004. [Epub ahead of print] No abstract available.


Report from the National Institute of Allergy and Infectious Diseases workshop on "Atopic dermatitis and the atopic march: Mechanisms and interventions".

Davidson WF, Leung DYM, Beck LA, Berin CM, Boguniewicz M, Busse WW, Chatila TA, Geha RS, Gern JE, Guttman-Yassky E, Irvine AD, Kim BS, Kong HH, Lack G, Nadeau KC, Schwaninger J, Simpson A, Simpson EL, Spergel JM, Togias A, Wahn U, Wood RA, Woodfolk JA, Ziegler SF, Plaut M.

J Allergy Clin Immunol. 2019 Mar;143(3):894-913. doi: 10.1016/j.jaci.2019.01.003. Epub 2019 Jan 9.


Competition among nasal bacteria suggests a role for siderophore-mediated interactions in shaping the human nasal microbiota.

Stubbendieck RM, May DS, Chevrette MG, Temkin MI, Wendt-Pienkowski E, Cagnazzo J, Carlson CM, Gern JE, Currie CR.

Appl Environ Microbiol. 2018 Dec 21. pii: AEM.02406-18. doi: 10.1128/AEM.02406-18. [Epub ahead of print]


Emerging concepts and challenges in implementing the exposome paradigm in allergic diseases and asthma: a Practall document.

Agache I, Miller R, Gern JE, Hellings PW, Jutel M, Muraro A, Phipatanakul W, Quirce S, Peden D.

Allergy. 2019 Mar;74(3):449-463. doi: 10.1111/all.13690. Epub 2018 Dec 27.


TLR-7 Stress Signaling in Differentiating and Mature Eosinophils Is Mediated by the Prolyl Isomerase Pin1.

Shen ZJ, Hu J, Kashi V, Bochkov YA, Gern JE, Malter JS.

J Immunol. 2018 Dec 15;201(12):3503-3513. doi: 10.4049/jimmunol.1800881. Epub 2018 Nov 5.


Development of a Rhinovirus Inoculum using a Reverse Genetics Approach.

Gern JE, Lee WM, Swenson CA, Nakagome K, Lee I, Wolff M, Grindle K, Sigelman S, Liggett SB, Togias A, Evans M, Denlinger L, Gangnon R, Bochkov YA, Crisafi G.

J Infect Dis. 2018 Nov 1. doi: 10.1093/infdis/jiy629. [Epub ahead of print]


Trajectories of childhood immune development and respiratory health relevant to asthma and allergy.

Tang HH, Teo SM, Belgrave DC, Evans MD, Jackson DJ, Brozynska M, Kusel MM, Johnston SL, Gern JE, Lemanske RF, Simpson A, Custovic A, Sly PD, Holt PG, Holt KE, Inouye M.

Elife. 2018 Oct 15;7. pii: e35856. doi: 10.7554/eLife.35856.


Asthma is associated with carotid arterial injury in children: The Childhood Origins of Asthma (COAST) Cohort.

Tattersall MC, Evans MD, Korcarz CE, Mitchell C, Anderson E, DaSilva DF, Salazar LP, Gern JE, Jackson DJ, Lemanske RF Jr, Stein JH.

PLoS One. 2018 Sep 27;13(9):e0204708. doi: 10.1371/journal.pone.0204708. eCollection 2018.


Rhinitis in children and adolescents with asthma: Ubiquitous, difficult to control, and associated with asthma outcomes.

Togias A, Gergen PJ, Hu JW, Babineau DC, Wood RA, Cohen RT, Makhija MM, Khurana Hershey GK, Kercsmar CM, Gruchalla RS, Liu AH, Wang E, Kim H, Lamm CI, Bacharier LB, Pillai D, Sigelman SM, Gern JE, Busse WW.

J Allergy Clin Immunol. 2019 Mar;143(3):1003-1011.e10. doi: 10.1016/j.jaci.2018.07.041. Epub 2018 Sep 11.


Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease.

Teo SM, Tang HHF, Mok D, Judd LM, Watts SC, Pham K, Holt BJ, Kusel M, Serralha M, Troy N, Bochkov YA, Grindle K, Lemanske RF Jr, Johnston SL, Gern JE, Sly PD, Holt PG, Holt KE, Inouye M.

Cell Host Microbe. 2018 Sep 12;24(3):341-352.e5. doi: 10.1016/j.chom.2018.08.005.


Pulmonary function and bronchial reactivity 4 years after the first virus-induced wheezing.

Leino A, Lukkarinen M, Turunen R, Vuorinen T, Söderlund-Venermo M, Vahlberg T, Camargo CA Jr, Bochkov YA, Gern JE, Jartti T.

Allergy. 2019 Mar;74(3):518-526. doi: 10.1111/all.13593. Epub 2018 Oct 8.


Longitudinal Phenotypes of Respiratory Health in a High-Risk Urban Birth Cohort.

Bacharier LB, Beigelman A, Calatroni A, Jackson DJ, Gergen PJ, O'Connor GT, Kattan M, Wood RA, Sandel MT, Lynch SV, Fujimura KE, Fadrosh DW, Santee CA, Boushey H, Visness CM, Gern JE; NIAID sponsored Inner-City Asthma Consortium.

Am J Respir Crit Care Med. 2019 Jan 1;199(1):71-82. doi: 10.1164/rccm.201801-0190OC.


Rhinovirus Species in Children With Severe Bronchiolitis: Multicenter Cohort Studies in the United States and Finland.

Hasegawa K, Jartti T, Bochkov YA, Gern JE, Mansbach JM, Piedra PA, Toivonen L, Camargo CA Jr.

Pediatr Infect Dis J. 2019 Mar;38(3):e59-e62. doi: 10.1097/INF.0000000000002141.


Rhinovirus is the most common virus and rhinovirus-C is the most common species in paediatric intensive care respiratory admissions.

Cox DW, Khoo SK, Zhang G, Lindsay K, Keil AD, Knight G, Gern JE, Laing IA, Bizzintino J, Le Souëf PN.

Eur Respir J. 2018 Aug 9;52(2). pii: 1800207. doi: 10.1183/13993003.00207-2018. Print 2018 Aug. No abstract available.



Altman MC, Gern JE.

J Allergy Clin Immunol. 2018 Aug;142(2):713. doi: 10.1016/j.jaci.2018.04.035. Epub 2018 Jun 23. No abstract available.


Glycation of whey protein with dextrans of different molar mass: Effect on immunoglobulin E-binding capacity with blood sera obtained from patients with cow milk protein allergy.

Xu L, Gong Y, Gern JE, Ikeda S, Lucey JA.

J Dairy Sci. 2018 Aug;101(8):6823-6834. doi: 10.3168/jds.2017-14338. Epub 2018 May 16.


Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes.

Thompson EE, Nicodemus-Johnson J, Kim KW, Gern JE, Jackson DJ, Lemanske RF, Ober C.

Clin Epigenetics. 2018 May 9;10:62. doi: 10.1186/s13148-018-0491-2. eCollection 2018.


A new model of wheezing severity in young children using the validated ISAAC wheezing module: A latent variable approach with validation in independent cohorts.

Brunwasser SM, Gebretsadik T, Gold DR, Turi KN, Stone CA Jr, Datta S, Gern JE, Hartert TV.

PLoS One. 2018 Apr 17;13(4):e0194739. doi: 10.1371/journal.pone.0194739. eCollection 2018.


Allergen-induced activation of natural killer cells represents an early-life immune response in the development of allergic asthma.

Altman MC, Whalen E, Togias A, O'Connor GT, Bacharier LB, Bloomberg GR, Kattan M, Wood RA, Presnell S, LeBeau P, Jaffee K, Visness CM, Busse WW, Gern JE.

J Allergy Clin Immunol. 2018 Dec;142(6):1856-1866. doi: 10.1016/j.jaci.2018.02.019. Epub 2018 Mar 5.


Spirometry and Impulse Oscillometry in Preschool Children: Acceptability and Relationship to Maternal Smoking in Pregnancy.

Kattan M, Bacharier LB, O'Connor GT, Cohen R, Sorkness RL, Morgan W, Gergen PJ, Jaffee KF, Visness CM, Wood RA, Bloomberg GR, Doyle S, Burton R, Gern JE.

J Allergy Clin Immunol Pract. 2018 Sep - Oct;6(5):1596-1603.e6. doi: 10.1016/j.jaip.2017.12.028. Epub 2018 Feb 13.


Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment.

Chandra S, Wingender G, Greenbaum JA, Khurana A, Gholami AM, Ganesan AP, Rosenbach M, Jaffee K, Gern JE, Wood R, O'Connor G, Sandel M, Kattan M, Bacharier L, Togias A, Horner AA, Kronenberg M.

J Immunol. 2018 Mar 15;200(6):1995-2003. doi: 10.4049/jimmunol.1701525. Epub 2018 Feb 5.


Lethal Respiratory Disease Associated with Human Rhinovirus C in Wild Chimpanzees, Uganda, 2013.

Scully EJ, Basnet S, Wrangham RW, Muller MN, Otali E, Hyeroba D, Grindle KA, Pappas TE, Thompson ME, Machanda Z, Watters KE, Palmenberg AC, Gern JE, Goldberg TL.

Emerg Infect Dis. 2018 Feb;24(2):267-274. doi: 10.3201/eid2402.170778.


Viral Infections and Associated Factors That Promote Acute Exacerbations of Asthma.

Kim CK, Callaway Z, Gern JE.

Allergy Asthma Immunol Res. 2018 Jan;10(1):12-17. doi: 10.4168/aair.2018.10.1.12. Review.


Microbial volatile communication in human organotypic lung models.

Barkal LJ, Procknow CL, Álvarez-García YR, Niu M, Jiménez-Torres JA, Brockman-Schneider RA, Gern JE, Denlinger LC, Theberge AB, Keller NP, Berthier E, Beebe DJ.

Nat Commun. 2017 Nov 24;8(1):1770. doi: 10.1038/s41467-017-01985-4.


Cadherin-related Family Member 3 Genetics and Rhinovirus C Respiratory Illnesses.

Bønnelykke K, Coleman AT, Evans MD, Thorsen J, Waage J, Vissing NH, Carlsson CJ, Stokholm J, Chawes BL, Jessen LE, Fischer TK, Bochkov YA, Ober C, Lemanske RF Jr, Jackson DJ, Gern JE, Bisgaard H.

Am J Respir Crit Care Med. 2018 Mar 1;197(5):589-594. doi: 10.1164/rccm.201705-1021OC.


Association of rhinovirus species with common cold and asthma symptoms and bacterial pathogens.

Bashir H, Grindle K, Vrtis R, Vang F, Kang T, Salazar L, Anderson E, Pappas T, Gangnon R, Evans MD, Jackson DJ, Lemanske RF Jr, Bochkov YA, Gern JE.

J Allergy Clin Immunol. 2018 Feb;141(2):822-824.e9. doi: 10.1016/j.jaci.2017.09.027. Epub 2017 Oct 27. No abstract available.


Role of viral infections in the development and exacerbation of asthma in children.

Jartti T, Gern JE.

J Allergy Clin Immunol. 2017 Oct;140(4):895-906. doi: 10.1016/j.jaci.2017.08.003. Review.


Early-life home environment and risk of asthma among inner-city children.

O'Connor GT, Lynch SV, Bloomberg GR, Kattan M, Wood RA, Gergen PJ, Jaffee KF, Calatroni A, Bacharier LB, Beigelman A, Sandel MT, Johnson CC, Faruqi A, Santee C, Fujimura KE, Fadrosh D, Boushey H, Visness CM, Gern JE.

J Allergy Clin Immunol. 2018 Apr;141(4):1468-1475. doi: 10.1016/j.jaci.2017.06.040. Epub 2017 Sep 19.


Screen Time Engagement Is Increased in Urban Children With Asthma.

Rota AP, Bacharier LB, Jaffee K, Visness CM, Kattan M, O'Connor GT, Wood RA, Gergen PJ, Gern JE, Bloomberg GR.

Clin Pediatr (Phila). 2017 Oct;56(11):1048-1053. doi: 10.1177/0009922817698801. Epub 2017 Mar 20.


Enhanced plasmacytoid dendritic cell antiviral responses after omalizumab.

Gill MA, Liu AH, Calatroni A, Krouse RZ, Shao B, Schiltz A, Gern JE, Togias A, Busse WW.

J Allergy Clin Immunol. 2018 May;141(5):1735-1743.e9. doi: 10.1016/j.jaci.2017.07.035. Epub 2017 Sep 1.


Farm exposure in early childhood is associated with a lower risk of severe respiratory illnesses.

Ludka-Gaulke T, Ghera P, Waring SC, Keifer M, Seroogy C, Gern JE, Kirkhorn S.

J Allergy Clin Immunol. 2018 Jan;141(1):454-456.e4. doi: 10.1016/j.jaci.2017.07.032. Epub 2017 Sep 21. No abstract available.


Toll-like receptor 3 blockade in rhinovirus-induced experimental asthma exacerbations: A randomized controlled study.

Silkoff PE, Flavin S, Gordon R, Loza MJ, Sterk PJ, Lutter R, Diamant Z, Turner RB, Lipworth BJ, Proud D, Singh D, Eich A, Backer V, Gern JE, Herzmann C, Halperin SA, Mensinga TT, Del Vecchio AM, Branigan P, San Mateo L, Baribaud F, Barnathan ES, Johnston SL.

J Allergy Clin Immunol. 2018 Apr;141(4):1220-1230. doi: 10.1016/j.jaci.2017.06.027. Epub 2017 Jul 20.


Endotypes of difficult-to-control asthma in inner-city African American children.

Brown KR, Krouse RZ, Calatroni A, Visness CM, Sivaprasad U, Kercsmar CM, Matsui EC, West JB, Makhija MM, Gill MA, Kim H, Kattan M, Pillai D, Gern JE, Busse WW, Togias A, Liu AH, Khurana Hershey GK.

PLoS One. 2017 Jul 7;12(7):e0180778. doi: 10.1371/journal.pone.0180778. eCollection 2017.


Picornavectors. Viruses That Spread Bacteria.

Gern JE.

Am J Respir Crit Care Med. 2017 Nov 1;196(9):1095-1096. doi: 10.1164/rccm.201706-1073ED. No abstract available.


Effects of Omalizumab on Rhinovirus Infections, Illnesses, and Exacerbations of Asthma.

Esquivel A, Busse WW, Calatroni A, Togias AG, Grindle KG, Bochkov YA, Gruchalla RS, Kattan M, Kercsmar CM, Khurana Hershey G, Kim H, Lebeau P, Liu AH, Szefler SJ, Teach SJ, West JB, Wildfire J, Pongracic JA, Gern JE.

Am J Respir Crit Care Med. 2017 Oct 15;196(8):985-992. doi: 10.1164/rccm.201701-0120OC.


NIAID, NIEHS, NHLBI, and MCAN Workshop Report: The indoor environment and childhood asthma-implications for home environmental intervention in asthma prevention and management.

Gold DR, Adamkiewicz G, Arshad SH, Celedón JC, Chapman MD, Chew GL, Cook DN, Custovic A, Gehring U, Gern JE, Johnson CC, Kennedy S, Koutrakis P, Leaderer B, Mitchell H, Litonjua AA, Mueller GA, O'Connor GT, Ownby D, Phipatanakul W, Persky V, Perzanowski MS, Ramsey CD, Salo PM, Schwaninger JM, Sordillo JE, Spira A, Suglia SF, Togias A, Zeldin DC, Matsui EC.

J Allergy Clin Immunol. 2017 Oct;140(4):933-949. doi: 10.1016/j.jaci.2017.04.024. Epub 2017 May 10.


Rhinovirus C targets ciliated airway epithelial cells.

Griggs TF, Bochkov YA, Basnet S, Pasic TR, Brockman-Schneider RA, Palmenberg AC, Gern JE.

Respir Res. 2017 May 4;18(1):84. doi: 10.1186/s12931-017-0567-0.


Community-acquired rhinovirus infection is associated with changes in the airway microbiome.

Kloepfer KM, Sarsani VK, Poroyko V, Lee WM, Pappas TE, Kang T, Grindle KA, Bochkov YA, Janga SC, Lemanske RF Jr, Gern JE.

J Allergy Clin Immunol. 2017 Jul;140(1):312-315.e8. doi: 10.1016/j.jaci.2017.01.038. Epub 2017 Mar 19. No abstract available.


Association of ORMDL3 with rhinovirus-induced endoplasmic reticulum stress and type I Interferon responses in human leucocytes.

Liu YP, Rajamanikham V, Baron M, Patel S, Mathur SK, Schwantes EA, Ober C, Jackson DJ, Gern JE, Lemanske RF Jr, Smith JA.

Clin Exp Allergy. 2017 Mar;47(3):371-382. doi: 10.1111/cea.12903.


Lessons learned from birth cohort studies conducted in diverse environments.

Jackson DJ, Gern JE, Lemanske RF Jr.

J Allergy Clin Immunol. 2017 Feb;139(2):379-386. doi: 10.1016/j.jaci.2016.12.941. Review.


Patterns of immune development in urban preschoolers with recurrent wheeze and/or atopy.

Gern JE, Calatroni A, Jaffee KF, Lynn H, Dresen A, Cruikshank WW, Lederman HM, Sampson HA, Shreffler W, Bacharier LB, Gergen PJ, Gold DR, Kattan M, O'Connor GT, Sandel MT, Wood RA, Bloomberg GR.

J Allergy Clin Immunol. 2017 Sep;140(3):836-844.e7. doi: 10.1016/j.jaci.2016.10.052. Epub 2017 Jan 13.


Epigenome-wide analysis links SMAD3 methylation at birth to asthma in children of asthmatic mothers.

DeVries A, Wlasiuk G, Miller SJ, Bosco A, Stern DA, Lohman IC, Rothers J, Jones AC, Nicodemus-Johnson J, Vasquez MM, Curtin JA, Simpson A, Custovic A, Jackson DJ, Gern JE, Lemanske RF Jr, Guerra S, Wright AL, Ober C, Halonen M, Vercelli D.

J Allergy Clin Immunol. 2017 Aug;140(2):534-542. doi: 10.1016/j.jaci.2016.10.041. Epub 2016 Dec 21.


Respiratory Syncytial Virus Bronchiolitis: Enter the Microbiome.

Gern JE.

Am J Respir Crit Care Med. 2016 Nov 1;194(9):1044-1045. No abstract available.


Mutations in VP1 and 3A proteins improve binding and replication of rhinovirus C15 in HeLa-E8 cells.

Bochkov YA, Watters K, Basnet S, Sijapati S, Hill M, Palmenberg AC, Gern JE.

Virology. 2016 Dec;499:350-360. doi: 10.1016/j.virol.2016.09.025. Epub 2016 Oct 13.


Pathways through which asthma risk factors contribute to asthma severity in inner-city children.

Liu AH, Babineau DC, Krouse RZ, Zoratti EM, Pongracic JA, O'Connor GT, Wood RA, Khurana Hershey GK, Kercsmar CM, Gruchalla RS, Kattan M, Teach SJ, Makhija M, Pillai D, Lamm CI, Gern JE, Sigelman SM, Gergen PJ, Togias A, Visness CM, Busse WW.

J Allergy Clin Immunol. 2016 Oct;138(4):1042-1050. doi: 10.1016/j.jaci.2016.06.060.


Distinguishing characteristics of difficult-to-control asthma in inner-city children and adolescents.

Pongracic JA, Krouse RZ, Babineau DC, Zoratti EM, Cohen RT, Wood RA, Khurana Hershey GK, Kercsmar CM, Gruchalla RS, Kattan M, Teach SJ, Johnson CC, Bacharier LB, Gern JE, Sigelman SM, Gergen PJ, Togias A, Visness CM, Busse WW, Liu AH.

J Allergy Clin Immunol. 2016 Oct;138(4):1030-1041. doi: 10.1016/j.jaci.2016.06.059.


Relationships among Maternal Stress and Depression, Type 2 Responses, and Recurrent Wheezing at Age 3 Years in Low-Income Urban Families.

Ramratnam SK, Visness CM, Jaffee KF, Bloomberg GR, Kattan M, Sandel MT, Wood RA, Gern JE, Wright RJ.

Am J Respir Crit Care Med. 2017 Mar 1;195(5):674-681. doi: 10.1164/rccm.201602-0272OC.

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