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Items: 27


Experience-dependent tuning of early olfactory processing in the adult honey bee, Apis mellifera.

Jernigan CM, Halby R, Gerkin RC, Sinakevitch I, Locatelli F, Smith BH.

J Exp Biol. 2020 Jan 6;223(Pt 1). pii: jeb206748. doi: 10.1242/jeb.206748.


OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans.

Sarma GP, Lee CW, Portegys T, Ghayoomie V, Jacobs T, Alicea B, Cantarelli M, Currie M, Gerkin RC, Gingell S, Gleeson P, Gordon R, Hasani RM, Idili G, Khayrulin S, Lung D, Palyanov A, Watts M, Larson SD.

Philos Trans R Soc Lond B Biol Sci. 2018 Sep 10;373(1758). pii: 20170382. doi: 10.1098/rstb.2017.0382. Review.


Towards systematic, data-driven validation of a collaborative, multi-scale model of Caenorhabditis elegans.

Gerkin RC, Jarvis RJ, Crook SM.

Philos Trans R Soc Lond B Biol Sci. 2018 Sep 10;373(1758). pii: 20170381. doi: 10.1098/rstb.2017.0381.


SwarmSight: Real-time Tracking of Insect Antenna Movements and Proboscis Extension Reflex Using a Common Preparation and Conventional Hardware.

Birgiolas J, Jernigan CM, Gerkin RC, Smith BH, Crook SM.

J Vis Exp. 2017 Dec 25;(130). doi: 10.3791/56803.


Modeling sources of interlaboratory variability in electrophysiological properties of mammalian neurons.

Tebaykin D, Tripathy SJ, Binnion N, Li B, Gerkin RC, Pavlidis P.

J Neurophysiol. 2018 Apr 1;119(4):1329-1339. doi: 10.1152/jn.00604.2017. Epub 2017 Dec 20.


Improved diagnosis of Parkinson's disease from a detailed olfactory phenotype.

Gerkin RC, Adler CH, Hentz JG, Shill HA, Driver-Dunckley E, Mehta SH, Sabbagh MN, Caviness JN, Dugger BN, Serrano G, Belden C, Smith BH, Sue L, Davis KJ, Zamrini E, Beach TG.

Ann Clin Transl Neurol. 2017 Sep 8;4(10):714-721. doi: 10.1002/acn3.447. eCollection 2017 Oct.


Comparative study of chemical neuroanatomy of the olfactory neuropil in mouse, honey bee, and human.

Sinakevitch I, Bjorklund GR, Newbern JM, Gerkin RC, Smith BH.

Biol Cybern. 2018 Apr;112(1-2):127-140. doi: 10.1007/s00422-017-0728-8. Epub 2017 Aug 29.


Predicting human olfactory perception from chemical features of odor molecules.

Keller A, Gerkin RC, Guan Y, Dhurandhar A, Turu G, Szalai B, Mainland JD, Ihara Y, Yu CW, Wolfinger R, Vens C, Schietgat L, De Grave K, Norel R; DREAM Olfaction Prediction Consortium, Stolovitzky G, Cecchi GA, Vosshall LB, Meyer P.

Science. 2017 Feb 24;355(6327):820-826. doi: 10.1126/science.aal2014. Epub 2017 Feb 20.


Unit testing, model validation, and biological simulation.

Sarma GP, Jacobs TW, Watts MD, Ghayoomie SV, Larson SD, Gerkin RC.

F1000Res. 2016 Aug 10;5:1946. doi: 10.12688/f1000research.9315.1. eCollection 2016.


The number of olfactory stimuli that humans can discriminate is still unknown.

Gerkin RC, Castro JB.

Elife. 2015 Jul 7;4:e08127. doi: 10.7554/eLife.08127.


Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types.

Tripathy SJ, Burton SD, Geramita M, Gerkin RC, Urban NN.

J Neurophysiol. 2015 Jun 1;113(10):3474-89. doi: 10.1152/jn.00237.2015. Epub 2015 Mar 25.


High-speed odor transduction and pulse tracking by insect olfactory receptor neurons.

Szyszka P, Gerkin RC, Galizia CG, Smith BH.

Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16925-30. doi: 10.1073/pnas.1412051111. Epub 2014 Nov 10.


NeuroElectro: a window to the world's neuron electrophysiology data.

Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC.

Front Neuroinform. 2014 Apr 29;8:40. doi: 10.3389/fninf.2014.00040. eCollection 2014.


Rinne revisited: steel versus aluminum tuning forks.

MacKechnie CA, Greenberg JJ, Gerkin RC, McCall AA, Hirsch BE, Durrant JD, Raz Y.

Otolaryngol Head Neck Surg. 2013 Dec;149(6):907-13. doi: 10.1177/0194599813505828. Epub 2013 Sep 30.


Origins of correlated spiking in the mammalian olfactory bulb.

Gerkin RC, Tripathy SJ, Urban NN.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17083-8. doi: 10.1073/pnas.1303830110. Epub 2013 Sep 30.


Homeostatic regulation of spontaneous and evoked synaptic transmission in two steps.

Gerkin RC, Nauen DW, Xu F, Bi GQ.

Mol Brain. 2013 Aug 22;6:38. doi: 10.1186/1756-6606-6-38.


Intermediate intrinsic diversity enhances neural population coding.

Tripathy SJ, Padmanabhan K, Gerkin RC, Urban NN.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8248-53. doi: 10.1073/pnas.1221214110. Epub 2013 Apr 29.


Accurately estimating neuronal correlation requires a new spike-sorting paradigm.

Ventura V, Gerkin RC.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7230-5. doi: 10.1073/pnas.1115236109. Epub 2012 Apr 23.


Morphological analysis of activity-reduced adult-born neurons in the mouse olfactory bulb.

Dahlen JE, Jimenez DA, Gerkin RC, Urban NN.

Front Neurosci. 2011 May 9;5:66. doi: 10.3389/fnins.2011.00066. eCollection 2011.


Synaptic scaling stabilizes persistent activity driven by asynchronous neurotransmitter release.

Volman V, Gerkin RC.

Neural Comput. 2011 Apr;23(4):927-57. doi: 10.1162/NECO_a_00098. Epub 2011 Jan 11.


Cortical up state activity is enhanced after seizures: a quantitative analysis.

Gerkin RC, Clem RL, Shruti S, Kass RE, Barth AL.

J Clin Neurophysiol. 2010 Dec;27(6):425-32. doi: 10.1097/WNP.0b013e3181fdf8bd.


Calcium and synaptic dynamics underlying reverberatory activity in neuronal networks.

Volman V, Gerkin RC, Lau PM, Ben-Jacob E, Bi GQ.

Phys Biol. 2007 Jun 11;4(2):91-103.


Modular competition driven by NMDA receptor subtypes in spike-timing-dependent plasticity.

Gerkin RC, Lau PM, Nauen DW, Wang YT, Bi GQ.

J Neurophysiol. 2007 Apr;97(4):2851-62. Epub 2007 Jan 31.


Coactivation and timing-dependent integration of synaptic potentiation and depression.

Wang HX, Gerkin RC, Nauen DW, Bi GQ.

Nat Neurosci. 2005 Feb;8(2):187-93. Epub 2005 Jan 16.


Calcium time course as a signal for spike-timing-dependent plasticity.

Rubin JE, Gerkin RC, Bi GQ, Chow CC.

J Neurophysiol. 2005 May;93(5):2600-13. Epub 2004 Dec 29.


The structure of ferritin cores determined by electron nanodiffraction.

Cowley JM, Janney DE, Gerkin RC, Buseck PR.

J Struct Biol. 2000 Sep;131(3):210-6.


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