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Items: 1 to 50 of 193

1.

Tensor decomposition of hyperspectral images to study autofluorescence in age-related macular degeneration.

Dey N, Hong S, Ach T, Koutalos Y, Curcio CA, Smith RT, Gerig G.

Med Image Anal. 2019 Aug;56:96-109. doi: 10.1016/j.media.2019.05.009. Epub 2019 May 31.

PMID:
31203169
2.

Model selection for spatiotemporal modeling of early childhood sub-cortical development.

Fishbaugh J, Paniagua B, Mostapha M, Styner M, Murphy V, Gilmore J, Gerig G.

Proc SPIE Int Soc Opt Eng. 2019 Feb;10949. pii: 109490L. doi: 10.1117/12.2513030. Epub 2019 Mar 15.

3.

SlicerSALT: Shape AnaLysis Toolbox.

Vicory J, Pascal L, Hernandez P, Fishbaugh J, Prieto J, Mostapha M, Huang C, Shah H, Hong J, Liu Z, Michoud L, Fillion-Robin JC, Gerig G, Zhu H, Pizer SM, Styner M, Paniagua B.

Shape Med Imaging (2018). 2018 Sep;11167:65-72. doi: 10.1007/978-3-030-04747-4_6. Epub 2018 Nov 23.

4.

Rapid Radial T1 and T2 Mapping of the Hip Articular Cartilage With Magnetic Resonance Fingerprinting.

Cloos MA, Assländer J, Abbas B, Fishbaugh J, Babb JS, Gerig G, Lattanzi R.

J Magn Reson Imaging. 2019 Sep;50(3):810-815. doi: 10.1002/jmri.26615. Epub 2018 Dec 24.

PMID:
30584691
5.

Restricted and Repetitive Behavior and Brain Functional Connectivity in Infants at Risk for Developing Autism Spectrum Disorder.

McKinnon CJ, Eggebrecht AT, Todorov A, Wolff JJ, Elison JT, Adams CM, Snyder AZ, Estes AM, Zwaigenbaum L, Botteron KN, McKinstry RC, Marrus N, Evans A, Hazlett HC, Dager SR, Paterson SJ, Pandey J, Schultz RT, Styner MA, Gerig G, Schlaggar BL, Petersen SE, Piven J, Pruett JR Jr; IBIS Network.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2019 Jan;4(1):50-61. doi: 10.1016/j.bpsc.2018.09.008. Epub 2018 Oct 2.

PMID:
30446435
6.

A Novel Framework for the Local Extraction of Extra-Axial Cerebrospinal Fluid from MR Brain Images.

Mostapha M, Shen MD, Kim S, Swanson M, Collins DL, Fonov V, Gerig G, Piven J, Styner MA; IBIS Network.

Proc SPIE Int Soc Opt Eng. 2018 Mar 2;10574. pii: 105740V. doi: 10.1117/12.2293116.

7.

4D CONTINUOUS MEDIAL REPRESENTATION BY GEODESIC SHAPE REGRESSION.

Hong S, Fishbaugh J, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:1014-1017. doi: 10.1109/ISBI.2018.8363743. Epub 2018 May 24.

8.

ESTIMATING SHAPE CORRESPONDENCE FOR POPULATIONS OF OBJECTS WITH COMPLEX TOPOLOGY.

Fishbaugh J, Pascal L, Fischer L, Nguyen T, Boen C, Goncalves J, Gerig G, Paniagua B.

Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:1010-1013. doi: 10.1109/ISBI.2018.8363742. Epub 2018 May 24.

9.

User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP.

Yushkevich PA, Pashchinskiy A, Oguz I, Mohan S, Schmitt JE, Stein JM, Zukić D, Vicory J, McCormick M, Yushkevich N, Schwartz N, Gao Y, Gerig G.

Neuroinformatics. 2019 Jan;17(1):83-102. doi: 10.1007/s12021-018-9385-x.

PMID:
29946897
10.

Development of White Matter Circuitry in Infants With Fragile X Syndrome.

Swanson MR, Wolff JJ, Shen MD, Styner M, Estes A, Gerig G, McKinstry RC, Botteron KN, Piven J, Hazlett HC; Infant Brain Imaging Study (IBIS) Network.

JAMA Psychiatry. 2018 May 1;75(5):505-513. doi: 10.1001/jamapsychiatry.2018.0180.

11.

Walking, Gross Motor Development, and Brain Functional Connectivity in Infants and Toddlers.

Marrus N, Eggebrecht AT, Todorov A, Elison JT, Wolff JJ, Cole L, Gao W, Pandey J, Shen MD, Swanson MR, Emerson RW, Klohr CL, Adams CM, Estes AM, Zwaigenbaum L, Botteron KN, McKinstry RC, Constantino JN, Evans AC, Hazlett HC, Dager SR, Paterson SJ, Schultz RT, Styner MA, Gerig G; IBIS Network, Schlaggar BL, Piven J, Pruett JR Jr.

Cereb Cortex. 2018 Feb 1;28(2):750-763. doi: 10.1093/cercor/bhx313.

12.

Resting-state fMRI in sleeping infants more closely resembles adult sleep than adult wakefulness.

Mitra A, Snyder AZ, Tagliazucchi E, Laufs H, Elison J, Emerson RW, Shen MD, Wolff JJ, Botteron KN, Dager S, Estes AM, Evans A, Gerig G, Hazlett HC, Paterson SJ, Schultz RT, Styner MA, Zwaigenbaum L; IBIS Network, Schlaggar BL, Piven J, Pruett JR Jr, Raichle M.

PLoS One. 2017 Nov 17;12(11):e0188122. doi: 10.1371/journal.pone.0188122. eCollection 2017.

13.

Subject-Specific Longitudinal Shape Analysis by Coupling Spatiotemporal Shape Modeling with Medial Analysis.

Hong S, Fishbaugh J, Rezanejad M, Siddiqi K, Johnson H, Paulsen J, Kim EY, Gerig G.

Proc SPIE Int Soc Opt Eng. 2017 Apr;10133. pii: 101331A. doi: 10.1117/12.2254675.

14.

ITK-SNAP: An Intractive Medical Image Segmentation Tool to Meet the Need for Expert-Guided Segmentation of Complex Medical Images.

Yushkevich PA, Gerig G.

IEEE Pulse. 2017 Jul-Aug;8(4):54-57. doi: 10.1109/MPUL.2017.2701493.

PMID:
28715317
15.

Functional neuroimaging of high-risk 6-month-old infants predicts a diagnosis of autism at 24 months of age.

Emerson RW, Adams C, Nishino T, Hazlett HC, Wolff JJ, Zwaigenbaum L, Constantino JN, Shen MD, Swanson MR, Elison JT, Kandala S, Estes AM, Botteron KN, Collins L, Dager SR, Evans AC, Gerig G, Gu H, McKinstry RC, Paterson S, Schultz RT, Styner M; IBIS Network, Schlaggar BL, Pruett JR Jr, Piven J.

Sci Transl Med. 2017 Jun 7;9(393). pii: eaag2882. doi: 10.1126/scitranslmed.aag2882.

16.

The Emergence of Network Inefficiencies in Infants With Autism Spectrum Disorder.

Lewis JD, Evans AC, Pruett JR Jr, Botteron KN, McKinstry RC, Zwaigenbaum L, Estes AM, Collins DL, Kostopoulos P, Gerig G, Dager SR, Paterson S, Schultz RT, Styner MA, Hazlett HC, Piven J; Infant Brain Imaging Study Network.

Biol Psychiatry. 2017 Aug 1;82(3):176-185. doi: 10.1016/j.biopsych.2017.03.006. Epub 2017 Mar 16.

17.

Geodesic shape regression with multiple geometries and sparse parameters.

Fishbaugh J, Durrleman S, Prastawa M, Gerig G.

Med Image Anal. 2017 Jul;39:1-17. doi: 10.1016/j.media.2017.03.008. Epub 2017 Apr 5.

18.

Increased Extra-axial Cerebrospinal Fluid in High-Risk Infants Who Later Develop Autism.

Shen MD, Kim SH, McKinstry RC, Gu H, Hazlett HC, Nordahl CW, Emerson RW, Shaw D, Elison JT, Swanson MR, Fonov VS, Gerig G, Dager SR, Botteron KN, Paterson S, Schultz RT, Evans AC, Estes AM, Zwaigenbaum L, Styner MA, Amaral DG, Piven J, Hazlett HC, Chappell C, Dager S, Estes A, Shaw D, Botteron K, McKinstry R, Constantino J, Pruett J, Schultz R, Zwaigenbaum L, Elison J, Evans AC, Collins DL, Pike GB, Fonov V, Kostopoulos P, Das S, Gerig G, Styner M, Gu H, Piven J; Infant Brain Imaging Study Network.

Biol Psychiatry. 2017 Aug 1;82(3):186-193. doi: 10.1016/j.biopsych.2017.02.1095. Epub 2017 Mar 6.

19.

Neural circuitry at age 6 months associated with later repetitive behavior and sensory responsiveness in autism.

Wolff JJ, Swanson MR, Elison JT, Gerig G, Pruett JR Jr, Styner MA, Vachet C, Botteron KN, Dager SR, Estes AM, Hazlett HC, Schultz RT, Shen MD, Zwaigenbaum L, Piven J; IBIS Network.

Mol Autism. 2017 Mar 4;8:8. doi: 10.1186/s13229-017-0126-z. eCollection 2017.

20.

ITK-SNAP: An interactive tool for semi-automatic segmentation of multi-modality biomedical images.

Yushkevich PA, Yang Gao, Gerig G.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:3342-3345. doi: 10.1109/EMBC.2016.7591443.

21.

Early brain development in infants at high risk for autism spectrum disorder.

Hazlett HC, Gu H, Munsell BC, Kim SH, Styner M, Wolff JJ, Elison JT, Swanson MR, Zhu H, Botteron KN, Collins DL, Constantino JN, Dager SR, Estes AM, Evans AC, Fonov VS, Gerig G, Kostopoulos P, McKinstry RC, Pandey J, Paterson S, Pruett JR, Schultz RT, Shaw DW, Zwaigenbaum L, Piven J; IBIS Network; Clinical Sites; Data Coordinating Center; Image Processing Core; Statistical Analysis.

Nature. 2017 Feb 15;542(7641):348-351. doi: 10.1038/nature21369.

22.

Bayesian Covariate Selection in Mixed-Effects Models For Longitudinal Shape Analysis.

Muralidharan P, Fishbaugh J, Kim EY, Johnson HJ, Paulsen JS, Gerig G, Fletcher PT.

Proc IEEE Int Symp Biomed Imaging. 2016 Apr;2016:656-659. doi: 10.1109/ISBI.2016.7493352. Epub 2016 Jun 16.

23.

Joint Attention and Brain Functional Connectivity in Infants and Toddlers.

Eggebrecht AT, Elison JT, Feczko E, Todorov A, Wolff JJ, Kandala S, Adams CM, Snyder AZ, Lewis JD, Estes AM, Zwaigenbaum L, Botteron KN, McKinstry RC, Constantino JN, Evans A, Hazlett HC, Dager S, Paterson SJ, Schultz RT, Styner MA, Gerig G, Das S, Kostopoulos P; IBIS Network†, Schlaggar BL, Petersen SE, Piven J, Pruett JR Jr.

Cereb Cortex. 2017 Mar 1;27(3):1709-1720. doi: 10.1093/cercor/bhw403.

24.

HYPERSPECTRAL AUTOFLUORESCENCE IMAGING OF DRUSEN AND RETINAL PIGMENT EPITHELIUM IN DONOR EYES WITH AGE-RELATED MACULAR DEGENERATION.

Tong Y, Ben Ami T, Hong S, Heintzmann R, Gerig G, Ablonczy Z, Curcio CA, Ach T, Smith RT.

Retina. 2016 Dec;36 Suppl 1:S127-S136. doi: 10.1097/IAE.0000000000001325.

25.

Modeling 4D Pathological Changes by Leveraging Normative Models.

Wang B, Prastawa M, Irimia A, Saha A, Liu W, Goh SY, Vespa PM, Van Horn JD, Gerig G.

Comput Vis Image Underst. 2016 Oct;151:3-13.

26.

Twin-singleton developmental study of brain white matter anatomy.

Sadeghi N, Gilmore JH, Gerig G.

Hum Brain Mapp. 2017 Feb;38(2):1009-1024. doi: 10.1002/hbm.23435. Epub 2016 Oct 14.

27.

Longitudinal modeling of appearance and shape and its potential for clinical use.

Gerig G, Fishbaugh J, Sadeghi N.

Med Image Anal. 2016 Oct;33:114-121. doi: 10.1016/j.media.2016.06.014. Epub 2016 Jun 15.

28.

Development of cortical shape in the human brain from 6 to 24months of age via a novel measure of shape complexity.

Kim SH, Lyu I, Fonov VS, Vachet C, Hazlett HC, Smith RG, Piven J, Dager SR, Mckinstry RC, Pruett JR Jr, Evans AC, Collins DL, Botteron KN, Schultz RT, Gerig G, Styner MA; IBIS Network.

Neuroimage. 2016 Jul 15;135:163-76. doi: 10.1016/j.neuroimage.2016.04.053. Epub 2016 May 3.

29.

Compressive Sensing Based Q-Space Resampling for Handling Fast Bulk Motion in Hardi Acquisitions.

Elhabian S, Vachet C, Piven J; for IBIS, Styner M, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2016;2016:907-910. doi: 10.1109/ISBI.2016.7493412. Epub 2016 Jun 16.

30.

Splenium development and early spoken language in human infants.

Swanson MR, Wolff JJ, Elison JT, Gu H, Hazlett HC, Botteron K, Styner M, Paterson S, Gerig G, Constantino J, Dager S, Estes A, Vachet C, Piven J; IBIS Network.

Dev Sci. 2017 Mar;20(2). doi: 10.1111/desc.12360. Epub 2015 Oct 21.

31.

Investigating Maternal Brain Structure and its Relationship to Substance Use and Motivational Systems.

Rutherford HJ, Gerig G, Gouttard S, Potenza MN, Mayes LC.

Yale J Biol Med. 2015 Sep 3;88(3):211-7. eCollection 2015 Sep.

32.

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery.

Pujol S, Wells W, Pierpaoli C, Brun C, Gee J, Cheng G, Vemuri B, Commowick O, Prima S, Stamm A, Goubran M, Khan A, Peters T, Neher P, Maier-Hein KH, Shi Y, Tristan-Vega A, Veni G, Whitaker R, Styner M, Westin CF, Gouttard S, Norton I, Chauvin L, Mamata H, Gerig G, Nabavi A, Golby A, Kikinis R.

J Neuroimaging. 2015 Nov-Dec;25(6):875-82. doi: 10.1111/jon.12283. Epub 2015 Aug 11.

33.

Performance of an efficient image-registration algorithm in processing MR renography data.

Conlin CC, Zhang JL, Rousset F, Vachet C, Zhao Y, Morton KA, Carlston K, Gerig G, Lee VS.

J Magn Reson Imaging. 2016 Feb;43(2):391-7. doi: 10.1002/jmri.25000. Epub 2015 Jul 14.

34.

Violence: heightened brain attentional network response is selectively muted in Down syndrome.

Anderson JS, Treiman SM, Ferguson MA, Nielsen JA, Edgin JO, Dai L, Gerig G, Korenberg JR.

J Neurodev Disord. 2015;7(1):15. doi: 10.1186/s11689-015-9112-y. Epub 2015 Jun 3.

35.

Automatic Tissue Segmentation of Neonate Brain MR Images with Subject-specific Atlases.

Cherel M, Budin F, Prastawa M, Gerig G, Lee K, Buss C, Lyall A, Consing KZ, Styner M.

Proc SPIE Int Soc Opt Eng. 2015 Feb 21;9413. doi: 10.1117/12.2082209.

36.

Shape index distribution based local surface complexity applied to the human cortex.

Kim SH, Fonov V, Collins DL, Gerig G; IBIS Network, Styner MA.

Proc SPIE Int Soc Opt Eng. 2015;9413. pii: 941344.

37.

Altered corpus callosum morphology associated with autism over the first 2 years of life.

Wolff JJ, Gerig G, Lewis JD, Soda T, Styner MA, Vachet C, Botteron KN, Elison JT, Dager SR, Estes AM, Hazlett HC, Schultz RT, Zwaigenbaum L, Piven J; IBIS Network.

Brain. 2015 Jul;138(Pt 7):2046-58. doi: 10.1093/brain/awv118. Epub 2015 May 3.

38.

Prenatal drug exposure affects neonatal brain functional connectivity.

Salzwedel AP, Grewen KM, Vachet C, Gerig G, Lin W, Gao W.

J Neurosci. 2015 Apr 8;35(14):5860-9. doi: 10.1523/JNEUROSCI.4333-14.2015.

39.

Accurate age classification of 6 and 12 month-old infants based on resting-state functional connectivity magnetic resonance imaging data.

Pruett JR Jr, Kandala S, Hoertel S, Snyder AZ, Elison JT, Nishino T, Feczko E, Dosenbach NU, Nardos B, Power JD, Adeyemo B, Botteron KN, McKinstry RC, Evans AC, Hazlett HC, Dager SR, Paterson S, Schultz RT, Collins DL, Fonov VS, Styner M, Gerig G, Das S, Kostopoulos P, Constantino JN, Estes AM; IBIS Network, Petersen SE, Schlaggar BL, Piven J.

Dev Cogn Neurosci. 2015 Apr;12:123-33. doi: 10.1016/j.dcn.2015.01.003. Epub 2015 Feb 3.

40.

Subject-Motion Correction in HARDI Acquisitions: Choices and Consequences.

Elhabian S, Gur Y, Vachet C, Piven J, Styner M, Leppert IR, Pike GB, Gerig G.

Front Neurol. 2014 Dec 9;5:240. doi: 10.3389/fneur.2014.00240. eCollection 2014.

41.

A JOINT FRAMEWORK FOR 4D SEGMENTATION AND ESTIMATION OF SMOOTH TEMPORAL APPEARANCE CHANGES.

Gao Y, Prastawa M, Styner M, Piven J, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2014 Apr;2014:1291-1294.

42.

A PRELIMINARY STUDY ON THE EFFECT OF MOTION CORRECTION ON HARDI RECONSTRUCTION.

Elhabian S, Gur Y, Vachet C, Piven J, Styner M, Leppert I, Pike GB, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2014 Apr;2014:1055-1058.

43.

PARAMETRIC REGRESSION SCHEME FOR DISTRIBUTIONS: ANALYSIS OF DTI FIBER TRACT DIFFUSION CHANGES IN EARLY BRAIN DEVELOPMENT.

Sharma A, Fletcher PT, Gilmore JH, Escolar ML, Gupta A, Styner M, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2014 Apr;2014:559-562.

44.

4D ACTIVE CUT: AN INTERACTIVE TOOL FOR PATHOLOGICAL ANATOMY MODELING.

Wang B, Liu W, Prastawa M, Irimia A, Vespa PM, van Horn JD, Fletcher PT, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2014 Apr;2014:529-532.

45.

GEODESIC REGRESSION OF IMAGE AND SHAPE DATA FOR IMPROVED MODELING OF 4D TRAJECTORIES.

Fishbaugh J, Prastawa M, Gerig G, Durrleman S.

Proc IEEE Int Symp Biomed Imaging. 2014 Apr;2014:385-388.

46.

Diffeomorphic shape trajectories for improved longitudinal segmentation and statistics.

Muralidharan P, Fishbaugh J, Johnson HJ, Durrleman S, Paulsen JS, Gerig G, Fletcher PT.

Med Image Comput Comput Assist Interv. 2014;17(Pt 3):49-56.

47.

Subject-specific prediction using nonlinear population modeling: application to early brain maturation from DTI.

Sadeghi N, Fletcher PT, Prastawa M, Gilmore JH, Gerig G.

Med Image Comput Comput Assist Interv. 2014;17(Pt 3):33-40.

48.

Characterizing growth patterns in longitudinal MRI using image contrast.

Vardhan A, Prastawa M, Vachet C, Piven J, Gerig G.

Proc SPIE Int Soc Opt Eng. 2014 Mar 21;9034:90340D.

49.

Prenatal cocaine effects on brain structure in early infancy.

Grewen K, Burchinal M, Vachet C, Gouttard S, Gilmore JH, Lin W, Johns J, Elam M, Gerig G.

Neuroimage. 2014 Nov 1;101:114-23. doi: 10.1016/j.neuroimage.2014.06.070. Epub 2014 Jul 3.

50.

Morphometry of anatomical shape complexes with dense deformations and sparse parameters.

Durrleman S, Prastawa M, Charon N, Korenberg JR, Joshi S, Gerig G, Trouvé A.

Neuroimage. 2014 Nov 1;101:35-49. doi: 10.1016/j.neuroimage.2014.06.043. Epub 2014 Jun 26.

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