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Items: 30

1.

Split Dapoxyl Aptamer for Sequence-Selective Analysis of Nucleic Acid Sequence Based Amplification Amplicons.

Kikuchi N, Reed A, Gerasimova YV, Kolpashchikov DM.

Anal Chem. 2019 Feb 19;91(4):2667-2671. doi: 10.1021/acs.analchem.8b03964. Epub 2019 Feb 4.

PMID:
30680988
2.

Species Typing of Nontuberculous Mycobacteria by Use of Deoxyribozyme Sensors.

Wood HN, Sidders AE, Brumsey LE, Morozkin ES, Gerasimova YV, Rohde KH.

Clin Chem. 2019 Feb;65(2):333-341. doi: 10.1373/clinchem.2018.295212. Epub 2018 Dec 6.

PMID:
30523201
3.

Alphanumerical Visual Display Made of DNA Logic Gates for Drug Susceptibility Testing of Pathogens.

Connelly RP, Morozkin ES, Gerasimova YV.

Chembiochem. 2018 Feb 2;19(3):203-206. doi: 10.1002/cbic.201700626. Epub 2018 Jan 4.

4.

Multiplex detection of extensively drug resistant tuberculosis using binary deoxyribozyme sensors.

Bengtson HN, Homolka S, Niemann S, Reis AJ, da Silva PE, Gerasimova YV, Kolpashchikov DM, Rohde KH.

Biosens Bioelectron. 2017 Aug 15;94:176-183. doi: 10.1016/j.bios.2017.02.051. Epub 2017 Mar 1.

5.

Nature of phase transitions in ammonium oxofluorovanadates, a vibrational spectroscopy study of (NH4)3VO2F4 and (NH4)3VOF5.

Gerasimova YV, Oreshonkov AS, Laptash NM, Vtyurin AN, Krylov AS, Shestakov NP, Ershov AA, Kocharova AG.

Spectrochim Acta A Mol Biomol Spectrosc. 2017 Apr 5;176:106-113. doi: 10.1016/j.saa.2017.01.004. Epub 2017 Jan 4. Review.

PMID:
28088082
6.

DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity.

Cox AJ, Bengtson HN, Gerasimova YV, Rohde KH, Kolpashchikov DM.

Chembiochem. 2016 Nov 3;17(21):2038-2041. doi: 10.1002/cbic.201600438. Epub 2016 Sep 13.

7.

Towards a DNA Nanoprocessor: Reusable Tile-Integrated DNA Circuits.

Gerasimova YV, Kolpashchikov DM.

Angew Chem Int Ed Engl. 2016 Aug 22;55(35):10244-7. doi: 10.1002/anie.201603265. Epub 2016 Jul 19.

PMID:
27430161
8.

Time course of large ribosomal subunit assembly in E. coli cells overexpressing a helicase inactive DbpA protein.

Gentry RC, Childs JJ, Gevorkyan J, Gerasimova YV, Koculi E.

RNA. 2016 Jul;22(7):1055-64. doi: 10.1261/rna.055137.115. Epub 2016 May 18.

9.

Expedited quantification of mutant ribosomal RNA by binary deoxyribozyme (BiDz) sensors.

Gerasimova YV, Yakovchuk P, Dedkova LM, Hecht SM, Kolpashchikov DM.

RNA. 2015 Oct;21(10):1834-43. doi: 10.1261/rna.052613.115. Epub 2015 Aug 19.

10.

Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems.

Mailloux S, Gerasimova YV, Guz N, Kolpashchikov DM, Katz E.

Angew Chem Int Ed Engl. 2015 May 26;54(22):6562-6. doi: 10.1002/anie.201411148. Epub 2015 Apr 9.

11.

Divide and control: split design of multi-input DNA logic gates.

Gerasimova YV, Kolpashchikov DM.

Chem Commun (Camb). 2015 Jan 18;51(5):870-2. doi: 10.1039/c4cc08241a. Epub 2014 Nov 27.

12.

Enzyme-assisted target recycling (EATR) for nucleic acid detection.

Gerasimova YV, Kolpashchikov DM.

Chem Soc Rev. 2014 Sep 7;43(17):6405-38. doi: 10.1039/c4cs00083h. Review.

PMID:
24901032
13.

Deoxyribozyme cascade for visual detection of bacterial RNA.

Gerasimova YV, Cornett EM, Edwards E, Su X, Rohde KH, Kolpashchikov DM.

Chembiochem. 2013 Nov 4;14(16):2087-90. doi: 10.1002/cbic.201300471. Epub 2013 Sep 17.

14.

Folding of 16S rRNA in a signal-producing structure for the detection of bacteria.

Gerasimova YV, Kolpashchikov DM.

Angew Chem Int Ed Engl. 2013 Sep 27;52(40):10586-8. doi: 10.1002/anie.201303919. Epub 2013 Sep 3.

15.

Detection of SNP-containing human DNA sequences using a split sensor with a universal molecular beacon reporter.

Gerasimova YV, Ballantyne J, Kolpashchikov DM.

Methods Mol Biol. 2013;1039:69-80. doi: 10.1007/978-1-62703-535-4_5.

PMID:
24026686
16.

Two-component covalent inhibitor.

Cornett EM, Gerasimova YV, Kolpashchikov DM.

Bioorg Med Chem. 2013 Apr 1;21(7):1988-91. doi: 10.1016/j.bmc.2013.01.021. Epub 2013 Jan 22.

17.

Detection of bacterial 16S rRNA using a molecular beacon-based X sensor.

Gerasimova YV, Kolpashchikov DM.

Biosens Bioelectron. 2013 Mar 15;41:386-90. doi: 10.1016/j.bios.2012.08.058. Epub 2012 Sep 5.

18.

Connectable DNA logic gates: OR and XOR logics.

Gerasimova YV, Kolpashchikov DM.

Chem Asian J. 2012 Mar 5;7(3):534-40. doi: 10.1002/asia.201100664. Epub 2011 Dec 23.

PMID:
22213731
19.

DNA nanotechnology for nucleic acid analysis: DX motif-based sensor.

Kolpashchikov DM, Gerasimova YV, Khan MS.

Chembiochem. 2011 Nov 25;12(17):2564-7. doi: 10.1002/cbic.201100545. Epub 2011 Oct 18.

20.

Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.

Nguyen C, Grimes J, Gerasimova YV, Kolpashchikov DM.

Chemistry. 2011 Nov 11;17(46):13052-8. doi: 10.1002/chem.201101987. Epub 2011 Sep 28.

21.

Enzyme-assisted binary probe for sensitive detection of RNA and DNA.

Gerasimova YV, Peck S, Kolpashchikov DM.

Chem Commun (Camb). 2010 Dec 14;46(46):8761-3. doi: 10.1039/c0cc03248d. Epub 2010 Oct 21.

22.

Real-time SNP analysis in secondary-structure-folded nucleic acids.

Grimes J, Gerasimova YV, Kolpashchikov DM.

Angew Chem Int Ed Engl. 2010 Nov 15;49(47):8950-3. doi: 10.1002/anie.201004475. No abstract available.

23.

A single molecular beacon probe is sufficient for the analysis of multiple nucleic acid sequences.

Gerasimova YV, Hayson A, Ballantyne J, Kolpashchikov DM.

Chembiochem. 2010 Aug 16;11(12):1762-8. doi: 10.1002/cbic.201000287.

24.

RNA-cleaving deoxyribozyme sensor for nucleic acid analysis: the limit of detection.

Gerasimova YV, Cornett E, Kolpashchikov DM.

Chembiochem. 2010 Apr 12;11(6):811-7, 729. doi: 10.1002/cbic.201000006.

25.

Nucleic acid detection using MNAzymes.

Gerasimova YV, Kolpashchikov DM.

Chem Biol. 2010 Feb 26;17(2):104-6. doi: 10.1016/j.chembiol.2010.02.003.

26.

RNA-hydrolyzing activity of human serum albumin and its recombinant analogue.

Gerasimova YV, Bobik TV, Ponomarenko NA, Shakirov MM, Zenkova MA, Tamkovich NV, Popova TV, Knorre DG, Godovikova TS.

Bioorg Med Chem Lett. 2010 Feb 15;20(4):1427-31. doi: 10.1016/j.bmcl.2009.12.095. Epub 2010 Jan 4.

PMID:
20079637
27.

Human serum albumin as a catalyst of RNA cleavage: N-homocysteinylation and N-phosphorylation by oligonucleotide affinity reagent alter the reactivity of the protein.

Gerasimova YV, Knorre DD, Shakirov MM, Godovikova TS.

Bioorg Med Chem Lett. 2008 Oct 15;18(20):5396-8. doi: 10.1016/j.bmcl.2008.09.049. Epub 2008 Sep 14.

PMID:
18829313
28.

Interaction of human serum albumin and its clinically relevant modification with oligoribonucleotides.

Gerasimova YV, Erchenko IA, Shakirov MM, Godovikova TS.

Bioorg Med Chem Lett. 2008 Aug 15;18(16):4511-4. doi: 10.1016/j.bmcl.2008.07.060. Epub 2008 Jul 17.

PMID:
18674900
29.

Affinity separation of polyribonucleotide-binding human blood proteins.

Gerasimova YV, Alekseyeva IV, Bogdanova TG, Erchenko IA, Kudryashova NV, Chelobanov BP, Laktionov PP, Alekseyev PV, Godovikova TS.

Bioorg Med Chem Lett. 2006 Nov 1;16(21):5526-9. Epub 2006 Aug 24.

PMID:
16934459
30.

Affinity labeling of RNA-polymerase II in the transcriptionally active complex by a phosphorylating analog of the initiation substrate.

Savinkova LK, Sokolenko AA, Rau VA, Arshinova TV, Gerasimova YV, Kudryashova NV, Godovikova TS.

Biochemistry (Mosc). 2000 Oct;65(10):1129-34.

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