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Gastrointestinal microbiota disruption and risk of colonization with carbapenem-resistant Pseudomonas aeruginosa in ICU patients.

Pettigrew MM, Gent JF, Kong Y, Halpin AL, Pineles L, Harris AD, Johnson JK.

Clin Infect Dis. 2018 Nov 1. doi: 10.1093/cid/ciy936. [Epub ahead of print]


Loss of RNA-Directed DNA Methylation in Maize Chromomethylase and DDM1-Type Nucleosome Remodeler Mutants.

Fu FF, Dawe RK, Gent JI.

Plant Cell. 2018 Jul;30(7):1617-1627. doi: 10.1105/tpc.18.00053. Epub 2018 Jun 8.


The Initial Impact of Tele-Critical Care on the Surgical Services of a Community Military Hospital.

Van Gent JM, Davis KL, Henry N, Zander AL, Kuettel MA, Edson T, Nelson TJ, Tadlock MD.

Mil Med. 2018 Nov 1;183(11-12):e494-e499. doi: 10.1093/milmed/usy051.


A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize.

Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, Harkess AE, Hodges AL, Hiatt EN.

Cell. 2018 May 3;173(4):839-850.e18. doi: 10.1016/j.cell.2018.03.009. Epub 2018 Apr 5.


Haemophilus influenzae genome evolution during persistence in the human airways in chronic obstructive pulmonary disease.

Pettigrew MM, Ahearn CP, Gent JF, Kong Y, Gallo MC, Munro JB, D'Mello A, Sethi S, Tettelin H, Murphy TF.

Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):E3256-E3265. doi: 10.1073/pnas.1719654115. Epub 2018 Mar 19.


Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.

Oka R, Zicola J, Weber B, Anderson SN, Hodgman C, Gent JI, Wesselink JJ, Springer NM, Hoefsloot HCJ, Turck F, Stam M.

Genome Biol. 2017 Jul 21;18(1):137. doi: 10.1186/s13059-017-1273-4.


Risk factors for deep vein thrombosis and pulmonary embolism after traumatic injury: A competing risks analysis.

Van Gent JM, Calvo RY, Zander AL, Olson EJ, Sise CB, Sise MJ, Shackford SR.

J Trauma Acute Care Surg. 2017 Dec;83(6):1154-1160. doi: 10.1097/TA.0000000000001652.


Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives.

Gent JI, Wang N, Dawe RK.

Genome Biol. 2017 Jun 21;18(1):121. doi: 10.1186/s13059-017-1249-4.


Improved maize reference genome with single-molecule technologies.

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Presting GG, McMullen M, Ross-Ibarra J, Dawe RK, Hastie A, Rank DR, Ware D.

Nature. 2017 Jun 22;546(7659):524-527. doi: 10.1038/nature22971. Epub 2017 Jun 12.


Anterior subcutaneous transposition for persistent ulnar neuropathy after neurolysis.

van Gent JA, Datema M, Groen JL, Pondaag W, Eekhof JL, Malessy MJ.

Neurosurg Focus. 2017 Mar;42(3):E8. doi: 10.3171/2016.11.FOCUS16451.


Association of sputum microbiota profiles with severity of community-acquired pneumonia in children.

Pettigrew MM, Gent JF, Kong Y, Wade M, Gansebom S, Bramley AM, Jain S, Arnold SL, McCullers JA.

BMC Infect Dis. 2016 Jul 8;16:317. doi: 10.1186/s12879-016-1670-4.


Effect of Fluoroquinolones and Macrolides on Eradication and Resistance of Haemophilus influenzae in Chronic Obstructive Pulmonary Disease.

Pettigrew MM, Tsuji BT, Gent JF, Kong Y, Holden PN, Sethi S, Murphy TF.

Antimicrob Agents Chemother. 2016 Jun 20;60(7):4151-8. doi: 10.1128/AAC.00301-16. Print 2016 Jul.


Determining the magnitude of surveillance bias in the assessment of lower extremity deep venous thrombosis: A prospective observational study of two centers.

Shackford SR, Cipolle MD, Badiee J, Mosby DL, Knudson MM, Lewis PR, McDonald VS, Olson EJ, Thompson KA, Van Gent JM, Zander AL.

J Trauma Acute Care Surg. 2016 May;80(5):734-9; discussion 740-1. doi: 10.1097/TA.0000000000001009.


Indoor microbial communities: Influence on asthma severity in atopic and nonatopic children.

Dannemiller KC, Gent JF, Leaderer BP, Peccia J.

J Allergy Clin Immunol. 2016 Jul;138(1):76-83.e1. doi: 10.1016/j.jaci.2015.11.027. Epub 2016 Feb 4.


Gene Expression and Chromatin Modifications Associated with Maize Centromeres.

Zhao H, Zhu X, Wang K, Gent JI, Zhang W, Dawe RK, Jiang J.

G3 (Bethesda). 2015 Nov 12;6(1):183-92. doi: 10.1534/g3.115.022764.


RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.

Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14728-33. doi: 10.1073/pnas.1514680112. Epub 2015 Nov 9.


Heparin versus enoxaparin for prevention of venous thromboembolism after trauma: A randomized noninferiority trial.

Olson EJ, Bandle J, Calvo RY, Shackford SR, Dunne CE, Van Gent JM, Zander AL, Sikand H, Bongiovanni MS, Sise MJ, Sise CB.

J Trauma Acute Care Surg. 2015 Dec;79(6):961-8; discussion 968-9. doi: 10.1097/TA.0000000000000750.


Venous thromboembolic risk assessment models should not solely guide prophylaxis and surveillance in trauma patients.

Zander AL, Van Gent JM, Olson EJ, Shackford SR, Badiee J, Dunne CE, Sise CB, Sise MJ.

J Trauma Acute Care Surg. 2015 Aug;79(2):194-8. doi: 10.1097/TA.0000000000000439.


Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres.

Gent JI, Wang K, Jiang J, Dawe RK.

Genetics. 2015 Aug;200(4):1105-16. doi: 10.1534/genetics.115.177360. Epub 2015 Jun 10.


Influence of housing characteristics on bacterial and fungal communities in homes of asthmatic children.

Dannemiller KC, Gent JF, Leaderer BP, Peccia J.

Indoor Air. 2016 Apr;26(2):179-92. doi: 10.1111/ina.12205. Epub 2015 Apr 17.


Does resuscitation with plasma increase the risk of venous thromboembolism?

Zander AL, Olson EJ, Van Gent JM, Bandle J, Calvo RY, Shackford SR, Peck KA, Sise CB, Sise MJ, King BS.

J Trauma Acute Care Surg. 2015 Jan;78(1):39-43; discussion 43-4. doi: 10.1097/TA.0000000000000480.


Asthma medication use during pregnancy, wheeze and estimated exposure to ambient nitrogen dioxide.

Gent JF, Kezik JM, Hill ME, McKay LA, Holford TR, Leaderer BP, Bracken MB.

Eur Respir J. 2015 Feb;45(2):538-40. doi: 10.1183/09031936.00161514. Epub 2014 Dec 23. No abstract available.


Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation.

Gent JI, Madzima TF, Bader R, Kent MR, Zhang X, Stam M, McGinnis KM, Dawe RK.

Plant Cell. 2014 Dec;26(12):4903-17. doi: 10.1105/tpc.114.130427. Epub 2014 Dec 2.


Below-knee deep vein thrombosis: an opportunity to prevent pulmonary embolism?

Olson EJ, Zander AL, Van Gent JM, Shackford SR, Badiee J, Sise CB, Sise MJ.

J Trauma Acute Care Surg. 2014 Sep;77(3):459-63. doi: 10.1097/TA.0000000000000305.


Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection.

Pettigrew MM, Marks LR, Kong Y, Gent JF, Roche-Hakansson H, Hakansson AP.

Infect Immun. 2014 Nov;82(11):4607-19. doi: 10.1128/IAI.02225-14. Epub 2014 Aug 18.


Isolated traumatic brain injury and venous thromboembolism.

Van Gent JM, Bandle J, Calvo RY, Zander AL, Olson EJ, Shackford SR, Peck KA, Sise CB, Sise MJ.

J Trauma Acute Care Surg. 2014 Aug;77(2):238-42. doi: 10.1097/TA.0000000000000294.


Pulmonary embolism without deep venous thrombosis: De novo or missed deep venous thrombosis?

Van Gent JM, Zander AL, Olson EJ, Shackford SR, Dunne CE, Sise CB, Badiee J, Schechter MS, Sise MJ.

J Trauma Acute Care Surg. 2014 May;76(5):1270-4. doi: 10.1097/TA.0000000000000233.


Associations of PM₂.₅ constituents and sources with hospital admissions: analysis of four counties in Connecticut and Massachusetts (USA) for persons ≥ 65 years of age.

Bell ML, Ebisu K, Leaderer BP, Gent JF, Lee HJ, Koutrakis P, Wang Y, Dominici F, Peng RD.

Environ Health Perspect. 2014 Feb;122(2):138-44. doi: 10.1289/ehp.1306656. Epub 2013 Nov 8.


Household levels of nitrogen dioxide and pediatric asthma severity.

Belanger K, Holford TR, Gent JF, Hill ME, Kezik JM, Leaderer BP.

Epidemiology. 2013 Mar;24(2):320-30. doi: 10.1097/EDE.0b013e318280e2ac.


Spreading of heterochromatin is limited to specific families of maize retrotransposons.

Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM.

PLoS Genet. 2012;8(12):e1003127. doi: 10.1371/journal.pgen.1003127. Epub 2012 Dec 13.


CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize.

Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK.

Genome Res. 2013 Apr;23(4):628-37. doi: 10.1101/gr.146985.112. Epub 2012 Dec 26.


RNA as a structural and regulatory component of the centromere.

Gent JI, Dawe RK.

Annu Rev Genet. 2012;46:443-53. doi: 10.1146/annurev-genet-110711-155419. Epub 2012 Sep 4. Review.


Household mold and dust allergens: exposure, sensitization and childhood asthma morbidity.

Gent JF, Kezik JM, Hill ME, Tsai E, Li DW, Leaderer BP.

Environ Res. 2012 Oct;118:86-93. doi: 10.1016/j.envres.2012.07.005. Epub 2012 Aug 3.


An environmental epigenetic study of ADRB2 5'-UTR methylation and childhood asthma severity.

Fu A, Leaderer BP, Gent JF, Leaderer D, Zhu Y.

Clin Exp Allergy. 2012 Nov;42(11):1575-81. doi: 10.1111/j.1365-2222.2012.04055.x. Epub 2012 Aug 3.


Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children.

Pettigrew MM, Laufer AS, Gent JF, Kong Y, Fennie KP, Metlay JP.

Appl Environ Microbiol. 2012 Sep;78(17):6262-70. doi: 10.1128/AEM.01051-12. Epub 2012 Jun 29.


Relationship between birth weight and exposure to airborne fine particulate potassium and titanium during gestation.

Bell ML, Belanger K, Ebisu K, Gent JF, Leaderer BP.

Environ Res. 2012 Aug;117:83-9. doi: 10.1016/j.envres.2012.05.004. Epub 2012 Jun 16.


Biochemically distinct vesicles from the endoplasmic reticulum fuse to form peroxisomes.

van der Zand A, Gent J, Braakman I, Tabak HF.

Cell. 2012 Apr 13;149(2):397-409. doi: 10.1016/j.cell.2012.01.054.


Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications.

Gent JI, Dong Y, Jiang J, Dawe RK.

Nucleic Acids Res. 2012 Feb;40(4):1550-60. doi: 10.1093/nar/gkr862. Epub 2011 Nov 4.


Viral-bacterial interactions and risk of acute otitis media complicating upper respiratory tract infection.

Pettigrew MM, Gent JF, Pyles RB, Miller AL, Nokso-Koivisto J, Chonmaitree T.

J Clin Microbiol. 2011 Nov;49(11):3750-5. doi: 10.1128/JCM.01186-11. Epub 2011 Sep 7.


On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans.

Blanchard D, Parameswaran P, Lopez-Molina J, Gent J, Saynuk JF, Fire A.

RNA Biol. 2011 May-Jun;8(3):458-67. Epub 2011 May 1.


Spatial and temporal variability of fine particle composition and source types in five cities of Connecticut and Massachusetts.

Lee HJ, Gent JF, Leaderer BP, Koutrakis P.

Sci Total Environ. 2011 May 1;409(11):2133-42. doi: 10.1016/j.scitotenv.2011.02.025. Epub 2011 Mar 22.


Fungal gene expression on demand: an inducible, tunable, and metabolism-independent expression system for Aspergillus niger.

Meyer V, Wanka F, van Gent J, Arentshorst M, van den Hondel CA, Ram AF.

Appl Environ Microbiol. 2011 May;77(9):2975-83. doi: 10.1128/AEM.02740-10. Epub 2011 Mar 4.


Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning.

Gent JI, Schneider KL, Topp CN, Rodriguez C, Presting GG, Dawe RK.

Epigenetics Chromatin. 2011 Feb 25;4:3. doi: 10.1186/1756-8935-4-3.


Microbial communities of the upper respiratory tract and otitis media in children.

Laufer AS, Metlay JP, Gent JF, Fennie KP, Kong Y, Pettigrew MM.

MBio. 2011 Feb 1;2(1):e00245-10. doi: 10.1128/mBio.00245-10.


Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome.

Lamm AT, Stadler MR, Zhang H, Gent JI, Fire AZ.

Genome Res. 2011 Feb;21(2):265-75. doi: 10.1101/gr.108845.110. Epub 2010 Dec 22.


Modeling effects of traffic and landscape characteristics on ambient nitrogen dioxide levels in Connecticut.

Skene KJ, Gent JF, McKay LA, Belanger K, Leaderer BP, Holford TR.

Atmos Environ (1994). 2010 Dec 1;44(39):5156-5164.


Prenatal exposure to fine particulate matter and birth weight: variations by particulate constituents and sources.

Bell ML, Belanger K, Ebisu K, Gent JF, Lee HJ, Koutrakis P, Leaderer BP.

Epidemiology. 2010 Nov;21(6):884-91. doi: 10.1097/EDE.0b013e3181f2f405.


Air pollution, population vulnerability, and standards for ambient air quality.

Gent JF, Bell ML.

Am J Respir Crit Care Med. 2010 Aug 1;182(3):296-7. doi: 10.1164/rccm.201004-0538ED. No abstract available.


Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma.

Gent JI, Lamm AT, Pavelec DM, Maniar JM, Parameswaran P, Tao L, Kennedy S, Fire AZ.

Mol Cell. 2010 Mar 12;37(5):679-89. doi: 10.1016/j.molcel.2010.01.012. Epub 2010 Jan 28.


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