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PySpacell: A Python Package for Spatial Analysis of Cell Images.

Rose F, Rappez L, Triana SH, Alexandrov T, Genovesio A.

Cytometry A. 2019 Dec 24. doi: 10.1002/cyto.a.23955. [Epub ahead of print]


Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes.

Almonacid M, Al Jord A, El-Hayek S, Othmani A, Coulpier F, Lemoine S, Miyamoto K, Grosse R, Klein C, Piolot T, Mailly P, Voituriez R, Genovesio A, Verlhac MH.

Dev Cell. 2019 Oct 21;51(2):145-157.e10. doi: 10.1016/j.devcel.2019.09.010. Epub 2019 Oct 10.


Hidden Markov Models Predict the Future Choice Better Than a PSTH-Based Method.

Marcos E, Londei F, Genovesio A.

Neural Comput. 2019 Sep;31(9):1874-1890. doi: 10.1162/neco_a_01216. Epub 2019 Jul 23.


m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants.

Yang L, Perrera V, Saplaoura E, Apelt F, Bahin M, Kramdi A, Olas J, Mueller-Roeber B, Sokolowska E, Zhang W, Li R, Pitzalis N, Heinlein M, Zhang S, Genovesio A, Colot V, Kragler F.

Curr Biol. 2019 Aug 5;29(15):2465-2476.e5. doi: 10.1016/j.cub.2019.06.042. Epub 2019 Jul 18.


A Network Activity Reconfiguration Underlies the Transition from Goal to Action.

Marcos E, Tsujimoto S, Mattia M, Genovesio A.

Cell Rep. 2019 Jun 4;27(10):2909-2920.e4. doi: 10.1016/j.celrep.2019.05.021.


Effects of reward size and context on learning in macaque monkeys.

Ferrucci L, Nougaret S, Brunamonti E, Genovesio A.

Behav Brain Res. 2019 Oct 17;372:111983. doi: 10.1016/j.bbr.2019.111983. Epub 2019 May 26.


Role of the social actor during social interaction and learning in human-monkey paradigms.

Nougaret S, Ferrucci L, Genovesio A.

Neurosci Biobehav Rev. 2019 Jul;102:242-250. doi: 10.1016/j.neubiorev.2019.05.004. Epub 2019 May 6. Review.


ALFA: annotation landscape for aligned reads.

Bahin M, Noël BF, Murigneux V, Bernard C, Bastianelli L, Le Hir H, Lebreton A, Genovesio A.

BMC Genomics. 2019 Mar 29;20(1):250. doi: 10.1186/s12864-019-5624-2.


Adult Neural Stem Cells and Multiciliated Ependymal Cells Share a Common Lineage Regulated by the Geminin Family Members.

Ortiz-Álvarez G, Daclin M, Shihavuddin A, Lansade P, Fortoul A, Faucourt M, Clavreul S, Lalioti ME, Taraviras S, Hippenmeyer S, Livet J, Meunier A, Genovesio A, Spassky N.

Neuron. 2019 Apr 3;102(1):159-172.e7. doi: 10.1016/j.neuron.2019.01.051. Epub 2019 Feb 26.


Neural Correlations Underlying Self-Generated Decision in the Frontal Pole Cortex during a Cued Strategy Task.

Mione V, Tsujimoto S, Genovesio A.

Neuroscience. 2019 Apr 15;404:519-528. doi: 10.1016/j.neuroscience.2019.02.023. Epub 2019 Feb 24.


Macaque monkeys learn by observation in the ghost display condition in the object-in-place task with differential reward to the observer.

Ferrucci L, Nougaret S, Genovesio A.

Sci Rep. 2019 Jan 23;9(1):401. doi: 10.1038/s41598-018-36803-4.


Neural Intrinsic Timescales in the Macaque Dorsal Premotor Cortex Predict the Strength of Spatial Response Coding.

Cirillo R, Fascianelli V, Ferrucci L, Genovesio A.

iScience. 2018 Dec 21;10:203-210. doi: 10.1016/j.isci.2018.11.033. Epub 2018 Nov 22.


Monitored eCLIP: high accuracy mapping of RNA-protein interactions.

Hocq R, Paternina J, Alasseur Q, Genovesio A, Le Hir H.

Nucleic Acids Res. 2018 Nov 30;46(21):11553-11565. doi: 10.1093/nar/gky858.


DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.

Nassrallah A, Rougée M, Bourbousse C, Drevensek S, Fonseca S, Iniesto E, Ait-Mohamed O, Deton-Cabanillas AF, Zabulon G, Ahmed I, Stroebel D, Masson V, Lombard B, Eeckhout D, Gevaert K, Loew D, Genovesio A, Breyton C, De Jaeger G, Bowler C, Rubio V, Barneche F.

Elife. 2018 Sep 7;7. pii: e37892. doi: 10.7554/eLife.37892.


Coding of Self and Other's Future Choices in Dorsal Premotor Cortex during Social Interaction.

Cirillo R, Ferrucci L, Marcos E, Ferraina S, Genovesio A.

Cell Rep. 2018 Aug 14;24(7):1679-1686. doi: 10.1016/j.celrep.2018.07.030.


Learning the meaning of new stimuli increases the cross-correlated activity of prefrontal neurons.

Nougaret S, Genovesio A.

Sci Rep. 2018 Aug 3;8(1):11680. doi: 10.1038/s41598-018-29862-0.


Ependymal cilia beating induces an actin network to protect centrioles against shear stress.

Mahuzier A, Shihavuddin A, Fournier C, Lansade P, Faucourt M, Menezes N, Meunier A, Garfa-Traoré M, Carlier MF, Voituriez R, Genovesio A, Spassky N, Delgehyr N.

Nat Commun. 2018 Jun 11;9(1):2279. doi: 10.1038/s41467-018-04676-w.


Autocorrelation Structure in the Macaque Dorsolateral, But not Orbital or Polar, Prefrontal Cortex Predicts Response-Coding Strength in a Visually Cued Strategy Task.

Fascianelli V, Tsujimoto S, Marcos E, Genovesio A.

Cereb Cortex. 2019 Jan 1;29(1):230-241. doi: 10.1093/cercor/bhx321.


Interference between Space and Time Estimations: From Behavior to Neurons.

Marcos E, Genovesio A.

Front Neurosci. 2017 Nov 21;11:631. doi: 10.3389/fnins.2017.00631. eCollection 2017. Review.


Outcome Modulation Across Tasks in the Primate Dorsolateral Prefrontal Cortex.

Marcos E, Nougaret S, Tsujimoto S, Genovesio A.

Neuroscience. 2018 Feb 10;371:96-105. doi: 10.1016/j.neuroscience.2017.11.019. Epub 2017 Nov 20.


Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays.

Rose F, Basu S, Rexhepaj E, Chauchereau A, Del Nery E, Genovesio A.

SLAS Technol. 2018 Jun;23(3):243-251. doi: 10.1177/2472630317740831. Epub 2017 Nov 3.


Calibrated mitotic oscillator drives motile ciliogenesis.

Al Jord A, Shihavuddin A, Servignat d'Aout R, Faucourt M, Genovesio A, Karaiskou A, Sobczak-Thépot J, Spassky N, Meunier A.

Science. 2017 Nov 10;358(6364):803-806. doi: 10.1126/science.aan8311. Epub 2017 Oct 5.


Neural activity in macaque medial frontal cortex represents others' choices.

Falcone R, Cirillo R, Ferraina S, Genovesio A.

Sci Rep. 2017 Oct 4;7(1):12663. doi: 10.1038/s41598-017-12822-5.


An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation.

di Pietro F, Valon L, Li Y, Goïame R, Genovesio A, Morin X.

Curr Biol. 2017 Aug 21;27(16):2452-2464.e8. doi: 10.1016/j.cub.2017.06.055. Epub 2017 Aug 10.


Smooth 2D manifold extraction from 3D image stack.

Shihavuddin A, Basu S, Rexhepaj E, Delestro F, Menezes N, Sigoillot SM, Del Nery E, Selimi F, Spassky N, Genovesio A.

Nat Commun. 2017 May 31;8:15554. doi: 10.1038/ncomms15554.


Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.

Boulay AC, Saubaméa B, Adam N, Chasseigneaux S, Mazaré N, Gilbert A, Bahin M, Bastianelli L, Blugeon C, Perrin S, Pouch J, Ducos B, Le Crom S, Genovesio A, Chrétien F, Declèves X, Laplanche JL, Cohen-Salmon M.

Cell Discov. 2017 Mar 28;3:17005. doi: 10.1038/celldisc.2017.5. eCollection 2017.


mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis.

Foerster P, Daclin M, Asm S, Faucourt M, Boletta A, Genovesio A, Spassky N.

Development. 2017 Jan 15;144(2):201-210. doi: 10.1242/dev.138271. Epub 2016 Dec 19.


Independent coding of absolute duration and distance magnitudes in the prefrontal cortex.

Marcos E, Tsujimoto S, Genovesio A.

J Neurophysiol. 2017 Jan 1;117(1):195-203. doi: 10.1152/jn.00245.2016. Epub 2016 Oct 19.


Firing Variability of Frontal Pole Neurons during a Cued Strategy Task.

Tsujimoto S, Genovesio A.

J Cogn Neurosci. 2017 Jan;29(1):25-36. Epub 2016 Sep 14.


Reaching-related Neurons in Superior Parietal Area 5: Influence of the Target Visibility.

Brunamonti E, Genovesio A, Pani P, Caminiti R, Ferraina S.

J Cogn Neurosci. 2016 Nov;28(11):1828-1837. Epub 2016 Jul 5.


Event- and time-dependent decline of outcome information in the primate prefrontal cortex.

Marcos E, Tsujimoto S, Genovesio A.

Sci Rep. 2016 May 10;6:25622. doi: 10.1038/srep25622.


Detection and tracking of overlapping cell nuclei for large scale mitosis analyses.

Li Y, Rose F, di Pietro F, Morin X, Genovesio A.

BMC Bioinformatics. 2016 Apr 26;17(1):183. doi: 10.1186/s12859-016-1030-9.


Neuronal Modulation in the Prefrontal Cortex in a Transitive Inference Task: Evidence of Neuronal Correlates of Mental Schema Management.

Brunamonti E, Mione V, Di Bello F, Pani P, Genovesio A, Ferraina S.

J Neurosci. 2016 Jan 27;36(4):1223-36. doi: 10.1523/JNEUROSCI.1473-15.2016.


Neural Encoding of Self and Another Agent's Goal in the Primate Prefrontal Cortex: Human-Monkey Interactions.

Falcone R, Brunamonti E, Ferraina S, Genovesio A.

Cereb Cortex. 2016 Dec;26(12):4613-4622. doi: 10.1093/cercor/bhv224. Epub 2015 Oct 13.


Prefrontal Goal Codes Emerge as Latent States in Probabilistic Value Learning.

Stoianov I, Genovesio A, Pezzulo G.

J Cogn Neurosci. 2016 Jan;28(1):140-57. doi: 10.1162/jocn_a_00886. Epub 2015 Oct 6.


Context-Dependent Duration Signals in the Primate Prefrontal Cortex.

Genovesio A, Seitz LK, Tsujimoto S, Wise SP.

Cereb Cortex. 2016 Aug;26(8):3345-56. doi: 10.1093/cercor/bhv156. Epub 2015 Jul 24.


Automatic comparison of stimulus durations in the primate prefrontal cortex: the neural basis of across-task interference.

Genovesio A, Cirillo R, Tsujimoto S, Mohammad Abdellatif S, Wise SP.

J Neurophysiol. 2015 Jul;114(1):48-56. doi: 10.1152/jn.00057.2015. Epub 2015 Apr 22.


High-throughput in vivo genotoxicity testing: an automated readout system for the somatic mutation and recombination test (SMART).

Lombardot B, Oh CT, Kwak J, Genovesio A, Kang M, Hansen MA, Han SJ.

PLoS One. 2015 Apr 1;10(4):e0121287. doi: 10.1371/journal.pone.0121287. eCollection 2015.


From duration and distance comparisons to goal encoding in prefrontal cortex.

Genovesio A, Tsujimoto S.

Adv Exp Med Biol. 2014;829:167-86. doi: 10.1007/978-1-4939-1782-2_10. Review.


The influence of recent decisions on future goal selection.

Genovesio A, Ferraina S.

Philos Trans R Soc Lond B Biol Sci. 2014 Nov 5;369(1655). pii: 20130477. doi: 10.1098/rstb.2013.0477. Review.


The NMDAr antagonist ketamine interferes with manipulation of information for transitive inference reasoning in non-human primates.

Brunamonti E, Mione V, Di Bello F, De Luna P, Genovesio A, Ferraina S.

J Psychopharmacol. 2014 Sep;28(9):881-7. doi: 10.1177/0269881114538543. Epub 2014 Jun 18.


Increasing the Content of High-Content Screening: An Overview.

Singh S, Carpenter AE, Genovesio A.

J Biomol Screen. 2014 Jun;19(5):640-50. doi: 10.1177/1087057114528537. Epub 2014 Apr 7. Review.


Dimerization, oligomerization, and aggregation of human amyotrophic lateral sclerosis copper/zinc superoxide dismutase 1 protein mutant forms in live cells.

Kim J, Lee H, Lee JH, Kwon DY, Genovesio A, Fenistein D, Ogier A, Brondani V, Grailhe R.

J Biol Chem. 2014 May 23;289(21):15094-103. doi: 10.1074/jbc.M113.542613. Epub 2014 Apr 1.


Autonomous encoding of irrelevant goals and outcomes by prefrontal cortex neurons.

Genovesio A, Tsujimoto S, Navarra G, Falcone R, Wise SP.

J Neurosci. 2014 Jan 29;34(5):1970-8. doi: 10.1523/JNEUROSCI.3228-13.2014.


Transfer of the nonmatch-to-goal rule in monkeys across cognitive domains.

Falcone R, Bevacqua S, Cerasti E, Brunamonti E, Cervelloni M, Genovesio A.

PLoS One. 2013 Dec 31;8(12):e84100. doi: 10.1371/journal.pone.0084100. eCollection 2013.


Prefrontal-parietal function: from foraging to foresight.

Genovesio A, Wise SP, Passingham RE.

Trends Cogn Sci. 2014 Feb;18(2):72-81. doi: 10.1016/j.tics.2013.11.007. Epub 2013 Dec 27.


Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment.

Ljosa V, Caie PD, Ter Horst R, Sokolnicki KL, Jenkins EL, Daya S, Roberts ME, Jones TR, Singh S, Genovesio A, Clemons PA, Carragher NO, Carpenter AE.

J Biomol Screen. 2013 Dec;18(10):1321-9. doi: 10.1177/1087057113503553. Epub 2013 Sep 17.


Development of a multiplex phenotypic cell-based high throughput screening assay to identify novel hepatitis C virus antivirals.

Kim HY, Li X, Jones CT, Rice CM, Garcia JM, Genovesio A, Hansen MA, Windisch MP.

Antiviral Res. 2013 Jul;99(1):6-11. doi: 10.1016/j.antiviral.2013.04.020. Epub 2013 May 6.


Macaque monkeys can learn token values from human models through vicarious reward.

Bevacqua S, Cerasti E, Falcone R, Cervelloni M, Brunamonti E, Ferraina S, Genovesio A.

PLoS One. 2013;8(3):e59961. doi: 10.1371/journal.pone.0059961. Epub 2013 Mar 27.

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