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Items: 1 to 50 of 55

1.

In silico prediction of protein flexibility with local structure approach.

Narwani TJ, Etchebest C, Craveur P, Léonard S, Rebehmed J, Srinivasan N, Bornot A, Gelly JC, de Brevern AG.

Biochimie. 2019 Oct;165:150-155. doi: 10.1016/j.biochi.2019.07.025. Epub 2019 Aug 1.

2.

Discrete analyses of protein dynamics.

Narwani TJ, Craveur P, Shinada NK, Floch A, Santuz H, Vattekatte AM, Srinivasan N, Rebehmed J, Gelly JC, Etchebest C, de Brevern AG.

J Biomol Struct Dyn. 2019 Aug 12:1-15. doi: 10.1080/07391102.2019.1650112. [Epub ahead of print]

PMID:
31361191
3.

Cross-sectional multicentre study on the cohort of all the French junior lecturers in general practice.

Barais M, Laporte C, Schuers M, Saint-Lary O, Frappé P, Dibao-Dina C, Darmon D, Bouchez T, Gelly J.

Eur J Gen Pract. 2018 Dec;24(1):99-105. doi: 10.1080/13814788.2017.1422176.

4.

KNOTTIN: the database of inhibitor cystine knot scaffold after 10 years, toward a systematic structure modeling.

Postic G, Gracy J, Périn C, Chiche L, Gelly JC.

Nucleic Acids Res. 2018 Jan 4;46(D1):D454-D458. doi: 10.1093/nar/gkx1084.

5.

TMPL: a database of experimental and theoretical transmembrane protein models positioned in the lipid bilayer.

Postic G, Ghouzam Y, Etchebest C, Gelly JC.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax022.

6.

Recent advances on polyproline II.

Narwani TJ, Santuz H, Shinada N, Melarkode Vattekatte A, Ghouzam Y, Srinivasan N, Gelly JC, de Brevern AG.

Amino Acids. 2017 Apr;49(4):705-713. doi: 10.1007/s00726-017-2385-6. Epub 2017 Feb 9. Review.

7.

An ambiguity principle for assigning protein structural domains.

Postic G, Ghouzam Y, Chebrek R, Gelly JC.

Sci Adv. 2017 Jan 13;3(1):e1600552. doi: 10.1126/sciadv.1600552. eCollection 2017 Jan.

8.

ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles.

Ghouzam Y, Postic G, Guerin PE, de Brevern AG, Gelly JC.

Sci Rep. 2016 Jun 20;6:28268. doi: 10.1038/srep28268.

9.

OREMPRO web server: orientation and assessment of atomistic and coarse-grained structures of membrane proteins.

Postic G, Ghouzam Y, Gelly JC.

Bioinformatics. 2016 Aug 15;32(16):2548-50. doi: 10.1093/bioinformatics/btw208. Epub 2016 Apr 19.

PMID:
27153644
10.

Membrane positioning for high- and low-resolution protein structures through a binary classification approach.

Postic G, Ghouzam Y, Guiraud V, Gelly JC.

Protein Eng Des Sel. 2016 Mar;29(3):87-91. doi: 10.1093/protein/gzv063. Epub 2015 Dec 19.

PMID:
26685702
11.

Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.

Ghouzam Y, Postic G, de Brevern AG, Gelly JC.

Bioinformatics. 2015 Dec 1;31(23):3782-9. doi: 10.1093/bioinformatics/btv462. Epub 2015 Aug 7.

PMID:
26254434
12.

Protein flexibility in the light of structural alphabets.

Craveur P, Joseph AP, Esque J, Narwani TJ, Noël F, Shinada N, Goguet M, Leonard S, Poulain P, Bertrand O, Faure G, Rebehmed J, Ghozlane A, Swapna LS, Bhaskara RM, Barnoud J, Téletchéa S, Jallu V, Cerny J, Schneider B, Etchebest C, Srinivasan N, Gelly JC, de Brevern AG.

Front Mol Biosci. 2015 May 27;2:20. doi: 10.3389/fmolb.2015.00020. eCollection 2015. Review.

13.

An empirical energy function for structural assessment of protein transmembrane domains.

Postic G, Ghouzam Y, Gelly JC.

Biochimie. 2015 Aug;115:155-61. doi: 10.1016/j.biochi.2015.05.018. Epub 2015 Jun 2.

PMID:
26044650
14.

PolyprOnline: polyproline helix II and secondary structure assignment database.

Chebrek R, Leonard S, de Brevern AG, Gelly JC.

Database (Oxford). 2014 Nov 7;2014. pii: bau102. doi: 10.1093/database/bau102. Print 2014.

15.

Local dynamics of proteins and DNA evaluated from crystallographic B factors.

Schneider B, Gelly JC, de Brevern AG, Černý J.

Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2413-9. doi: 10.1107/S1399004714014631. Epub 2014 Aug 29.

16.

Profile of French general practitioners providing opportunistic primary preventive care--an observational cross-sectional multicentre study.

Gelly J, Le Bel J, Aubin-Auger I, Mercier A, Youssef E, Mentre F, Nougairede M, Letrilliart L, Duval X; ECOGEN study group.

Fam Pract. 2014 Aug;31(4):445-52. doi: 10.1093/fampra/cmu032. Epub 2014 Jun 12.

PMID:
24925928
17.

Bioinformatic analysis of the protein/DNA interface.

Schneider B, Cerný J, Svozil D, Cech P, Gelly JC, de Brevern AG.

Nucleic Acids Res. 2014 Mar;42(5):3381-94. doi: 10.1093/nar/gkt1273. Epub 2013 Dec 11.

18.

mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet.

Léonard S, Joseph AP, Srinivasan N, Gelly JC, de Brevern AG.

J Biomol Struct Dyn. 2014 Apr;32(4):661-8. doi: 10.1080/07391102.2013.787026. Epub 2013 May 10.

19.

Preventive services recommendations for adults in primary care settings: agreement between Canada, France and the USA--a systematic review.

Gelly J, Mentre F, Nougairede M, Duval X.

Prev Med. 2013 Jul;57(1):3-11. doi: 10.1016/j.ypmed.2013.03.012. Epub 2013 Apr 6. Review.

20.

Selective constraint on human pre-mRNA splicing by protein structural properties.

Gelly JC, Lin HY, de Brevern AG, Chuang TJ, Chen FC.

Genome Biol Evol. 2012;4(9):966-75. doi: 10.1093/gbe/evs071. Epub 2012 Aug 30.

21.

PredyFlexy: flexibility and local structure prediction from sequence.

de Brevern AG, Bornot A, Craveur P, Etchebest C, Gelly JC.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W317-22. doi: 10.1093/nar/gks482. Epub 2012 Jun 11.

22.

Alveolar fibrocyte percentage is an independent predictor of poor outcome in patients with acute lung injury.

Quesnel C, Piednoir P, Gelly J, Nardelli L, Garnier M, Leçon V, Lasocki S, Bouadma L, Philip I, Elbim C, Mentré F, Soler P, Crestani B, Dehoux M.

Crit Care Med. 2012 Jan;40(1):21-8. doi: 10.1097/CCM.0b013e31822d718b.

PMID:
21926612
23.

Phase II study of cetuximab as first-line single-drug therapy in patients with unresectable squamous cell carcinoma of the skin.

Maubec E, Petrow P, Scheer-Senyarich I, Duvillard P, Lacroix L, Gelly J, Certain A, Duval X, Crickx B, Buffard V, Basset-Seguin N, Saez P, Duval-Modeste AB, Adamski H, Mansard S, Grange F, Dompmartin A, Faivre S, Mentré F, Avril MF.

J Clin Oncol. 2011 Sep 1;29(25):3419-26. doi: 10.1200/JCO.2010.34.1735. Epub 2011 Aug 1.

PMID:
21810686
24.

A short survey on protein blocks.

Joseph AP, Agarwal G, Mahajan S, Gelly JC, Swapna LS, Offmann B, Cadet F, Bornot A, Tyagi M, Valadié H, Schneider B, Etchebest C, Srinivasan N, De Brevern AG.

Biophys Rev. 2010 Aug;2(3):137-147. Epub 2010 Aug 5.

25.

iPBA: a tool for protein structure comparison using sequence alignment strategies.

Gelly JC, Joseph AP, Srinivasan N, de Brevern AG.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W18-23. doi: 10.1093/nar/gkr333. Epub 2011 May 17.

26.

Assignment of PolyProline II conformation and analysis of sequence--structure relationship.

Mansiaux Y, Joseph AP, Gelly JC, de Brevern AG.

PLoS One. 2011 Mar 31;6(3):e18401. doi: 10.1371/journal.pone.0018401.

27.

Protein Peeling 3D: new tools for analyzing protein structures.

Gelly JC, de Brevern AG.

Bioinformatics. 2011 Jan 1;27(1):132-3. doi: 10.1093/bioinformatics/btq610. Epub 2010 Nov 11.

28.

MitoGenesisDB: an expression data mining tool to explore spatio-temporal dynamics of mitochondrial biogenesis.

Gelly JC, Orgeur M, Jacq C, Lelandais G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1079-84. doi: 10.1093/nar/gkq781. Epub 2010 Sep 9.

29.

[Prevac B: prevention of hepatitis B among migrants from subsaharian Africa and Asia].

Aubert JP, Catrice M, Bouée S, Di Pumpo A, Santana P, Gervais A, Wajsbro A, Gelly J, Nougairède M.

Rev Prat. 2010 Jun 20;60(6 Suppl):13-20. French.

PMID:
20623916
30.

Detection and architecture of small heat shock protein monomers.

Poulain P, Gelly JC, Flatters D.

PLoS One. 2010 Apr 7;5(4):e9990. doi: 10.1371/journal.pone.0009990.

31.

KNOTTIN: the knottin or inhibitor cystine knot scaffold in 2007.

Gracy J, Le-Nguyen D, Gelly JC, Kaas Q, Heitz A, Chiche L.

Nucleic Acids Res. 2008 Jan;36(Database issue):D314-9. Epub 2007 Nov 19.

32.

Probing amyloid fibril formation of the NFGAIL peptide by computer simulations.

Melquiond A, Gelly JC, Mousseau N, Derreumaux P.

J Chem Phys. 2007 Feb 14;126(6):065101.

PMID:
17313247
33.

Protein Peeling 2: a web server to convert protein structures into series of protein units.

Gelly JC, Etchebest C, Hazout S, de Brevern AG.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W75-8.

34.

Theoretical analysis of micro-machined ultrasonic transducer using a simple 1-D model.

Ballandras SJ, Wilm M, Gelly JF.

IEEE Trans Ultrason Ferroelectr Freq Control. 2006 Jan;53(1):209-23.

PMID:
16471448
35.

'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.

Gelly JC, de Brevern AG, Hazout S.

Bioinformatics. 2006 Jan 15;22(2):129-33. Epub 2005 Nov 14.

PMID:
16301202
36.
37.

Squash inhibitors: from structural motifs to macrocyclic knottins.

Chiche L, Heitz A, Gelly JC, Gracy J, Chau PT, Ha PT, Hernandez JF, Le-Nguyen D.

Curr Protein Pept Sci. 2004 Oct;5(5):341-349. Review.

PMID:
15551519
38.

The KNOTTIN website and database: a new information system dedicated to the knottin scaffold.

Gelly JC, Gracy J, Kaas Q, Le-Nguyen D, Heitz A, Chiche L.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D156-9.

39.
41.

Laminin ultrastructural immunolocalization in rat testis during ontogenesis.

el Ouali H, Leheup BP, Gelly JL, Grignon G.

Histochemistry. 1991;95(3):241-6.

PMID:
2050544
42.

Immunocytochemical localization of albumin, transferrin, angiotensinogen and kininogens during the initial stages of the rat liver differentiation.

Gelly JL, Richoux JP, Grignon G, Bouhnik J, Baussant T, Alhenc-Gelas F, Corvol P.

Histochemistry. 1991;96(1):7-12.

PMID:
1938483
43.

The kallikrein-kinin system in the rat hypothalamus. Immunohistochemical localization of high molecular weight kininogen and T kininogen in different neuronal systems.

Richoux JP, Gelly JL, Bouhnik J, Baussant T, Alhenc-Gelas F, Grignon G, Corvol P.

Histochemistry. 1991;96(3):229-43.

PMID:
1917578
45.

Paracrine factors and rat ductus epididymis maturation in vivo and in vitro study of basement membrane and principal cell differentiation.

Leheup BP, Gelly JL, Delongeas JL, Grignon G.

Prog Clin Biol Res. 1989;296:227-32. No abstract available.

PMID:
2740373
46.
47.

Anionic sites of the basement membrane of rat seminiferous tubules during ontogenesis.

Leheup BP, Gelly JL, Delongeas JL, Grignon G.

Biol Cell. 1988;63(1):83-7.

PMID:
3191298
48.
49.

[Ultrastructural analysis of anionic sites of the basal membrane of the seminiferous tubules of subjects with severe oligospermia].

Leheup BP, Thomas JL, Delongeas JL, Gelly JL, Foliguet B, Leclere J, Grignon G.

Ann Pathol. 1987;7(4-5):263-7. French.

PMID:
3435618
50.

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