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Items: 48

1.

Can Foods or Herbs Alter the Bioavailability of Chemotherapy Drugs?

Geisen SM, Sturla SJ.

ACS Pharmacol Transl Sci. 2019 Feb 7;2(2):143-146. doi: 10.1021/acsptsci.9b00007. eCollection 2019 Apr 12. No abstract available.

2.

A global database of soil nematode abundance and functional group composition.

van den Hoogen J, Geisen S, Wall DH, Wardle DA, Traunspurger W, de Goede RGM, Adams BJ, Ahmad W, Ferris H, Bardgett RD, Bonkowski M, Campos-Herrera R, Cares JE, Caruso T, de Brito Caixeta L, Chen X, Costa SR, Creamer R, da Cunha E Castro JM, Dam M, Djigal D, Escuer M, Griffiths BS, Gutiérrez C, Hohberg K, Kalinkina D, Kardol P, Kergunteuil A, Korthals G, Krashevska V, Kudrin AA, Li Q, Liang W, Magilton M, Marais M, Martín JAR, Matveeva E, Mayad EH, Mzough E, Mulder C, Mullin P, Neilson R, Nguyen TAD, Nielsen UN, Okada H, Rius JEP, Pan K, Peneva V, Pellissier L, da Silva JCP, Pitteloud C, Powers TO, Powers K, Quist CW, Rasmann S, Moreno SS, Scheu S, Setälä H, Sushchuk A, Tiunov AV, Trap J, Vestergård M, Villenave C, Waeyenberge L, Wilschut RA, Wright DG, Keith AM, Yang JI, Schmidt O, Bouharroud R, Ferji Z, van der Putten WH, Routh D, Crowther TW.

Sci Data. 2020 Mar 26;7(1):103. doi: 10.1038/s41597-020-0437-3.

3.

Rhizosphere protists are key determinants of plant health.

Xiong W, Song Y, Yang K, Gu Y, Wei Z, Kowalchuk GA, Xu Y, Jousset A, Shen Q, Geisen S.

Microbiome. 2020 Mar 3;8(1):27. doi: 10.1186/s40168-020-00799-9.

4.

The global-scale distributions of soil protists and their contributions to belowground systems.

Oliverio AM, Geisen S, Delgado-Baquerizo M, Maestre FT, Turner BL, Fierer N.

Sci Adv. 2020 Jan 24;6(4):eaax8787. doi: 10.1126/sciadv.aax8787. eCollection 2020 Jan.

5.

Patterns of local, intercontinental and interseasonal variation of soil bacterial and eukaryotic microbial communities.

De Gruyter J, Weedon JT, Bazot S, Dauwe S, Fernandez-Garberí PR, Geisen S, De La Motte LG, Heinesch B, Janssens IA, Leblans N, Manise T, Ogaya R, Löfvenius MO, Peñuelas J, Sigurdsson BD, Vincent G, Verbruggen E.

FEMS Microbiol Ecol. 2020 Mar 1;96(3). pii: fiaa018. doi: 10.1093/femsec/fiaa018.

6.

Soil functional responses to drought under range-expanding and native plant communities.

Manrubia M, van der Putten WH, Weser C, Ten Hooven FC, Martens H, Brinkman EP, Geisen S, Ramirez KS, Veen GFC.

Funct Ecol. 2019 Dec;33(12):2402-2416. doi: 10.1111/1365-2435.13453. Epub 2019 Sep 12.

7.

Deciphering Underlying Drivers of Disease Suppressiveness Against Pathogenic Fusarium oxysporum.

Ou Y, Penton CR, Geisen S, Shen Z, Sun Y, Lv N, Wang B, Ruan Y, Xiong W, Li R, Shen Q.

Front Microbiol. 2019 Nov 12;10:2535. doi: 10.3389/fmicb.2019.02535. eCollection 2019.

8.

Efficient reduction of antibiotic residues and associated resistance genes in tylosin antibiotic fermentation waste using hyperthermophilic composting.

Liao H, Zhao Q, Cui P, Chen Z, Yu Z, Geisen S, Friman VP, Zhou S.

Environ Int. 2019 Dec;133(Pt B):105203. doi: 10.1016/j.envint.2019.105203. Epub 2019 Oct 26.

9.

Reduced tillage, but not organic matter input, increased nematode diversity and food web stability in European long-term field experiments.

Bongiorno G, Bodenhausen N, Bünemann EK, Brussaard L, Geisen S, Mäder P, Quist CW, Walser JC, de Goede RGM.

Mol Ecol. 2019 Nov;28(22):4987-5005. doi: 10.1111/mec.15270. Epub 2019 Oct 31.

10.

Challenges and Opportunities for Soil Biodiversity in the Anthropocene.

Geisen S, Wall DH, van der Putten WH.

Curr Biol. 2019 Oct 7;29(19):R1036-R1044. doi: 10.1016/j.cub.2019.08.007. Review.

PMID:
31593662
11.

Agriculture erases climate constraints on soil nematode communities across large spatial scales.

Li X, Zhu H, Geisen S, Bellard C, Hu F, Li H, Chen X, Liu M.

Glob Chang Biol. 2020 Feb;26(2):919-930. doi: 10.1111/gcb.14821. Epub 2019 Sep 28.

PMID:
31479174
12.

Microbial invasions in terrestrial ecosystems.

Thakur MP, van der Putten WH, Cobben MMP, van Kleunen M, Geisen S.

Nat Rev Microbiol. 2019 Oct;17(10):621-631. doi: 10.1038/s41579-019-0236-z. Epub 2019 Jul 26. Review.

PMID:
31350537
13.

Soil nematode abundance and functional group composition at a global scale.

van den Hoogen J, Geisen S, Routh D, Ferris H, Traunspurger W, Wardle DA, de Goede RGM, Adams BJ, Ahmad W, Andriuzzi WS, Bardgett RD, Bonkowski M, Campos-Herrera R, Cares JE, Caruso T, de Brito Caixeta L, Chen X, Costa SR, Creamer R, Mauro da Cunha Castro J, Dam M, Djigal D, Escuer M, Griffiths BS, Gutiérrez C, Hohberg K, Kalinkina D, Kardol P, Kergunteuil A, Korthals G, Krashevska V, Kudrin AA, Li Q, Liang W, Magilton M, Marais M, Martín JAR, Matveeva E, Mayad EH, Mulder C, Mullin P, Neilson R, Nguyen TAD, Nielsen UN, Okada H, Rius JEP, Pan K, Peneva V, Pellissier L, Carlos Pereira da Silva J, Pitteloud C, Powers TO, Powers K, Quist CW, Rasmann S, Moreno SS, Scheu S, Setälä H, Sushchuk A, Tiunov AV, Trap J, van der Putten W, Vestergård M, Villenave C, Waeyenberge L, Wall DH, Wilschut R, Wright DG, Yang JI, Crowther TW.

Nature. 2019 Aug;572(7768):194-198. doi: 10.1038/s41586-019-1418-6. Epub 2019 Jul 24.

PMID:
31341281
14.

Trophic Regulations of the Soil Microbiome.

Thakur MP, Geisen S.

Trends Microbiol. 2019 Sep;27(9):771-780. doi: 10.1016/j.tim.2019.04.008. Epub 2019 May 25. Review.

PMID:
31138481
15.

Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants.

Wilschut RA, Geisen S, Martens H, Kostenko O, de Hollander M, Ten Hooven FC, Weser C, Snoek LB, Bloem J, Caković D, Čelik T, Koorem K, Krigas N, Manrubia M, Ramirez KS, Tsiafouli MA, Vreš B, van der Putten WH.

Glob Chang Biol. 2019 Aug;25(8):2714-2726. doi: 10.1111/gcb.14657. Epub 2019 May 20.

16.

Root traits and belowground herbivores relate to plant-soil feedback variation among congeners.

Wilschut RA, van der Putten WH, Garbeva P, Harkes P, Konings W, Kulkarni P, Martens H, Geisen S.

Nat Commun. 2019 Apr 5;10(1):1564. doi: 10.1038/s41467-019-09615-x.

17.

Range-expansion effects on the belowground plant microbiome.

Ramirez KS, Snoek LB, Koorem K, Geisen S, Bloem LJ, Ten Hooven F, Kostenko O, Krigas N, Manrubia M, Caković D, van Raaij D, Tsiafouli MA, Vreš B, Čelik T, Weser C, Wilschut RA, van der Putten WH.

Nat Ecol Evol. 2019 Apr;3(4):604-611. doi: 10.1038/s41559-019-0828-z. Epub 2019 Mar 25.

18.

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils.

Zhao ZB, He JZ, Geisen S, Han LL, Wang JT, Shen JP, Wei WX, Fang YT, Li PP, Zhang LM.

Microbiome. 2019 Feb 27;7(1):33. doi: 10.1186/s40168-019-0647-0.

19.

Competition and predation as possible causes of bacterial rarity.

Kurm V, van der Putten WH, Weidner S, Geisen S, Snoek BL, Bakx T, Hol WHG.

Environ Microbiol. 2019 Apr;21(4):1356-1368. doi: 10.1111/1462-2920.14569. Epub 2019 Mar 18.

20.

Horizontal gene transfer and shifts in linked bacterial community composition are associated with maintenance of antibiotic resistance genes during food waste composting.

Liao H, Friman VP, Geisen S, Zhao Q, Cui P, Lu X, Chen Z, Yu Z, Zhou S.

Sci Total Environ. 2019 Apr 10;660:841-850. doi: 10.1016/j.scitotenv.2018.12.353. Epub 2018 Dec 26.

PMID:
30743970
21.

A low proportion of rare bacterial taxa responds to abiotic changes compared with dominant taxa.

Kurm V, Geisen S, Gera Hol WH.

Environ Microbiol. 2019 Feb;21(2):750-758. doi: 10.1111/1462-2920.14492. Epub 2018 Dec 19.

PMID:
30507058
22.

Immunological and mass spectrometry-based approaches to determine thresholds of the mutagenic DNA adduct O6-methylguanine in vivo.

Kraus A, McKeague M, Seiwert N, Nagel G, Geisen SM, Ziegler N, Trantakis IA, Kaina B, Thomas AD, Sturla SJ, Fahrer J.

Arch Toxicol. 2019 Feb;93(2):559-572. doi: 10.1007/s00204-018-2355-0. Epub 2018 Nov 16.

PMID:
30446773
23.

Protists: Puppet Masters of the Rhizosphere Microbiome.

Gao Z, Karlsson I, Geisen S, Kowalchuk G, Jousset A.

Trends Plant Sci. 2019 Feb;24(2):165-176. doi: 10.1016/j.tplants.2018.10.011. Epub 2018 Nov 13. Review.

PMID:
30446306
24.

Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado.

de Araujo ASF, Mendes LW, Lemos LN, Antunes JEL, Beserra JEA Jr, de Lyra MDCCP, Figueiredo MDVB, Lopes ÂCA, Gomes RLF, Bezerra WM, Melo VMM, de Araujo FF, Geisen S.

Commun Biol. 2018 Sep 6;1:135. doi: 10.1038/s42003-018-0129-0. eCollection 2018.

25.

Network Analyses Can Advance Above-Belowground Ecology.

Ramirez KS, Geisen S, Morriën E, Snoek BL, van der Putten WH.

Trends Plant Sci. 2018 Sep;23(9):759-768. doi: 10.1016/j.tplants.2018.06.009. Epub 2018 Jul 30. Review.

PMID:
30072227
26.

Soil protists: a fertile frontier in soil biology research.

Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernández LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E.

FEMS Microbiol Rev. 2018 May 1;42(3):293-323. doi: 10.1093/femsre/fuy006. Review.

PMID:
29447350
27.

Hyperthermophilic Composting Accelerates the Removal of Antibiotic Resistance Genes and Mobile Genetic Elements in Sewage Sludge.

Liao H, Lu X, Rensing C, Friman VP, Geisen S, Chen Z, Yu Z, Wei Z, Zhou S, Zhu Y.

Environ Sci Technol. 2018 Jan 2;52(1):266-276. doi: 10.1021/acs.est.7b04483. Epub 2017 Dec 15.

PMID:
29199822
28.

Soil protist communities form a dynamic hub in the soil microbiome.

Xiong W, Jousset A, Guo S, Karlsson I, Zhao Q, Wu H, Kowalchuk GA, Shen Q, Li R, Geisen S.

ISME J. 2018 Feb;12(2):634-638. doi: 10.1038/ismej.2017.171. Epub 2017 Oct 13.

29.

Seed and Root Endophytic Fungi in a Range Expanding and a Related Plant Species.

Geisen S, Kostenko O, Cnossen MC, Ten Hooven FC, Vreš B, van der Putten WH.

Front Microbiol. 2017 Aug 29;8:1645. doi: 10.3389/fmicb.2017.01645. eCollection 2017.

30.

Phylogeny and Systematics of Leptomyxid Amoebae (Amoebozoa, Tubulinea, Leptomyxida).

Smirnov A, Nassonova E, Geisen S, Bonkowski M, Kudryavtsev A, Berney C, Glotova A, Bondarenko N, Dyková I, Mrva M, Fahrni J, Pawlowski J.

Protist. 2017 Apr;168(2):220-252. doi: 10.1016/j.protis.2016.10.006. Epub 2016 Oct 26.

PMID:
28343121
31.

UniEuk: Time to Speak a Common Language in Protistology!

Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C.

J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. Review.

32.

Soil networks become more connected and take up more carbon as nature restoration progresses.

Morriën E, Hannula SE, Snoek LB, Helmsing NR, Zweers H, de Hollander M, Soto RL, Bouffaud ML, Buée M, Dimmers W, Duyts H, Geisen S, Girlanda M, Griffiths RI, Jørgensen HB, Jensen J, Plassart P, Redecker D, Schmelz RM, Schmidt O, Thomson BC, Tisserant E, Uroz S, Winding A, Bailey MJ, Bonkowski M, Faber JH, Martin F, Lemanceau P, de Boer W, van Veen JA, van der Putten WH.

Nat Commun. 2017 Feb 8;8:14349. doi: 10.1038/ncomms14349.

33.

Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group.

Tice AK, Shadwick LL, Fiore-Donno AM, Geisen S, Kang S, Schuler GA, Spiegel FW, Wilkinson KA, Bonkowski M, Dumack K, Lahr DJ, Voelcker E, Clauß S, Zhang J, Brown MW.

Biol Direct. 2016 Dec 28;11(1):69. doi: 10.1186/s13062-016-0171-0.

34.

The prey's scent - Volatile organic compound mediated interactions between soil bacteria and their protist predators.

Schulz-Bohm K, Geisen S, Wubs ER, Song C, de Boer W, Garbeva P.

ISME J. 2017 Mar;11(3):817-820. doi: 10.1038/ismej.2016.144. Epub 2016 Dec 2.

35.

Thorough high-throughput sequencing analyses unravels huge diversities of soil parasitic protists.

Geisen S.

Environ Microbiol. 2016 Jun;18(6):1669-72. doi: 10.1111/1462-2920.13309. No abstract available.

PMID:
27059550
36.

Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists.

Bass D, Silberman JD, Brown MW, Pearce RA, Tice AK, Jousset A, Geisen S, Hartikainen H.

Environ Microbiol. 2016 May;18(5):1604-19. doi: 10.1111/1462-2920.13235. Epub 2016 Apr 7.

PMID:
26914587
37.

Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding.

Arjen de Groot G, Laros I, Geisen S.

Methods Mol Biol. 2016;1399:125-40. doi: 10.1007/978-1-4939-3369-3_7.

PMID:
26791500
38.

Heterogeneity in the genus Allovahlkampfia and the description of the new genus Parafumarolamoeba (Vahlkampfiidae; Heterolobosea).

Geisen S, Bonkowski M, Zhang J, De Jonckheere JF.

Eur J Protistol. 2015 Aug;51(4):335-49. doi: 10.1016/j.ejop.2015.05.003. Epub 2015 Jun 11.

PMID:
26253648
39.

Pack hunting by a common soil amoeba on nematodes.

Geisen S, Rosengarten J, Koller R, Mulder C, Urich T, Bonkowski M.

Environ Microbiol. 2015 Nov;17(11):4538-46. doi: 10.1111/1462-2920.12949. Epub 2015 Jul 28.

PMID:
26079718
40.

Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa.

Geisen S, Laros I, Vizcaíno A, Bonkowski M, de Groot GA.

Mol Ecol. 2015 Sep;24(17):4556-69. doi: 10.1111/mec.13238. Epub 2015 Jun 5.

PMID:
25966360
41.

Expansion of the 'Reticulosphere': Diversity of Novel Branching and Network-forming Amoebae Helps to Define Variosea (Amoebozoa).

Berney C, Geisen S, Van Wichelen J, Nitsche F, Vanormelingen P, Bonkowski M, Bass D.

Protist. 2015 May;166(2):271-95. doi: 10.1016/j.protis.2015.04.001. Epub 2015 Apr 20.

PMID:
25965302
42.

Metatranscriptomic census of active protists in soils.

Geisen S, Tveit AT, Clark IM, Richter A, Svenning MM, Bonkowski M, Urich T.

ISME J. 2015 Oct;9(10):2178-90. doi: 10.1038/ismej.2015.30. Epub 2015 Mar 27.

43.

Acanthamoeba everywhere: high diversity of Acanthamoeba in soils.

Geisen S, Fiore-Donno AM, Walochnik J, Bonkowski M.

Parasitol Res. 2014 Sep;113(9):3151-8. doi: 10.1007/s00436-014-3976-8. Epub 2014 Jun 21.

PMID:
24951165
44.

Discrepancy between species borders at morphological and molecular levels in the genus Cochliopodium (Amoebozoa, Himatismenida), with the description of Cochliopodium plurinucleolum n. sp.

Geisen S, Kudryavtsev A, Bonkowski M, Smirnov A.

Protist. 2014 May;165(3):364-83. doi: 10.1016/j.protis.2014.04.002. Epub 2014 Apr 19.

PMID:
24859009
45.

Two new species of the genus Stenamoeba (Discosea, Longamoebia): cytoplasmic MTOC is present in one more amoebae lineage.

Geisen S, Weinert J, Kudryavtsev A, Glotova A, Bonkowski M, Smirnov A.

Eur J Protistol. 2014 Apr;50(2):153-65. doi: 10.1016/j.ejop.2014.01.007. Epub 2014 Feb 17.

PMID:
24703616
46.

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes.

Geisen S, Barturen G, Alganza ÁM, Hackenberg M, Oliver JL.

Nucleic Acids Res. 2014 Jan;42(Database issue):D53-9. doi: 10.1093/nar/gkt1202. Epub 2013 Nov 22.

47.

CpGislandEVO: a database and genome browser for comparative evolutionary genomics of CpG islands.

Barturen G, Geisen S, Dios F, Hamberg EJ, Hackenberg M, Oliver JL.

Biomed Res Int. 2013;2013:709042. doi: 10.1155/2013/709042. Epub 2013 Sep 25.

48.

Responses of the goldfish head lateral line to moving objects.

Mogdans J, Geisen S.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2009 Feb;195(2):151-65. doi: 10.1007/s00359-008-0394-3. Epub 2008 Nov 26.

PMID:
19034462

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