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Items: 47

1.

Rapid viral symbiogenesis via changes in parasitoid wasp genome architecture.

Burke GR, Simmonds TJ, Sharanowski BJ, Geib SM.

Mol Biol Evol. 2018 Jul 24. doi: 10.1093/molbev/msy148. [Epub ahead of print]

PMID:
30053110
2.
3.

Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis).

Scully ED, Geib SM, Mason CJ, Carlson JE, Tien M, Chen HY, Harding S, Tsai CJ, Hoover K.

Sci Rep. 2018 Jun 25;8(1):9620. doi: 10.1038/s41598-018-27476-0.

4.

Molecular Characterization of the 2016 New World Screwworm (Diptera: Calliphoridae) Outbreak in the Florida Keys.

Dupuis JR, Guerrero FD, Skoda SR, Phillips PL, Welch JB, Schlater JL, Azeredo-Espin AML, Pérez de León AA, Geib SM.

J Med Entomol. 2018 Jun 28;55(4):938-946. doi: 10.1093/jme/tjy078.

PMID:
29788142
5.

Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission.

Geib SM, Hall B, Derego T, Bremer FT, Cannoles K, Sim SB.

Gigascience. 2018 Apr 1;7(4):1-5. doi: 10.1093/gigascience/giy018.

6.

HiMAP: Robust phylogenomics from highly multiplexed amplicon sequencing.

Dupuis JR, Bremer FT, Kauwe A, San Jose M, Leblanc L, Rubinoff D, Geib SM.

Mol Ecol Resour. 2018 Apr 6. doi: 10.1111/1755-0998.12783. [Epub ahead of print]

PMID:
29633537
7.

PCR-Based Gut Content Analysis to Detect Predation of Eriococcus ironsidei (Hemiptera: Eriococcidae) by Coccinellidae Species in Macadamia Nut Orchards in Hawaii.

Gutierrez-Coarite R, Yoneishi NM, Pulakkatu-Thodi I, Mollinedo J, Calla B, Wright MG, Geib SM.

J Econ Entomol. 2018 Apr 2;111(2):885-891. doi: 10.1093/jee/toy019.

PMID:
29474561
8.

mvmapper: Interactive spatial mapping of genetic structures.

Dupuis JR, Bremer FT, Jombart T, Sim SB, Geib SM.

Mol Ecol Resour. 2018 Mar;18(2):362-367. doi: 10.1111/1755-0998.12724. Epub 2017 Oct 23.

PMID:
28987008
9.

De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly.

Frazier M, Helmkampf M, Bellinger MR, Geib SM, Takabayashi M.

BMC Genomics. 2017 Sep 11;18(1):710. doi: 10.1186/s12864-017-4090-y.

10.

A New Diagnostic Resource for Ceratitis capitata Strain Identification Based on QTL Mapping.

Sim SB, Ruiz-Arce R, Barr NB, Geib SM.

G3 (Bethesda). 2017 Nov 6;7(11):3637-3647. doi: 10.1534/g3.117.300169.

11.

Variation in DNA Methylation Is Not Consistently Reflected by Sociality in Hymenoptera.

Glastad KM, Arsenault SV, Vertacnik KL, Geib SM, Kay S, Danforth BN, Rehan SM, Linnen CR, Kocher SD, Hunt BG.

Genome Biol Evol. 2017 Jun 1;9(6):1687-1698. doi: 10.1093/gbe/evx128.

12.

Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies.

Geib SM, Liang GH, Murphy TD, Sim SB.

G3 (Bethesda). 2017 Aug 7;7(8):2407-2411. doi: 10.1534/g3.117.040741.

13.

Organ-specific transcriptome profiling of metabolic and pigment biosynthesis pathways in the floral ornamental progenitor species Anthurium amnicola Dressler.

Suzuki JY, Amore TD, Calla B, Palmer NA, Scully ED, Sattler SE, Sarath G, Lichty JS, Myers RY, Keith LM, Matsumoto TK, Geib SM.

Sci Rep. 2017 May 4;7(1):1596. doi: 10.1038/s41598-017-00808-2.

14.

A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of white pupae.

Sim SB, Geib SM.

G3 (Bethesda). 2017 Jun 7;7(6):1927-1940. doi: 10.1534/g3.117.040170.

15.

Host plant species determines symbiotic bacterial community mediating suppression of plant defenses.

Chung SH, Scully ED, Peiffer M, Geib SM, Rosa C, Hoover K, Felton GW.

Sci Rep. 2017 Jan 3;7:39690. doi: 10.1038/srep39690.

16.

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, Calla B, Chao H, Childers AK, Childers C, Clarke DJ, Cohen L, Demuth JP, Dinh H, Doddapaneni H, Dolan A, Duan JJ, Dugan S, Friedrich M, Glastad KM, Goodisman MA, Haddad S, Han Y, Hughes DS, Ioannidis P, Johnston JS, Jones JW, Kuhn LA, Lance DR, Lee CY, Lee SL, Lin H, Lynch JA, Moczek AP, Murali SC, Muzny DM, Nelson DR, Palli SR, Panfilio KA, Pers D, Poelchau MF, Quan H, Qu J, Ray AM, Rinehart JP, Robertson HM, Roehrdanz R, Rosendale AJ, Shin S, Silva C, Torson AS, Jentzsch IM, Werren JH, Worley KC, Yocum G, Zdobnov EM, Gibbs RA, Richards S.

Genome Biol. 2016 Nov 11;17(1):227.

17.

Prediction of a peptidome for the western tarnished plant bug Lygus hesperus.

Christie AE, Hull JJ, Richer JA, Geib SM, Tassone EE.

Gen Comp Endocrinol. 2017 Mar 1;243:22-38. doi: 10.1016/j.ygcen.2016.10.008. Epub 2016 Oct 24.

PMID:
27789347
18.

Contrasting diets reveal metabolic plasticity in the tree-killing beetle, Anoplophora glabripennis (Cerambycidae: Lamiinae).

Mason CJ, Scully ED, Geib SM, Hoover K.

Sci Rep. 2016 Sep 22;6:33813. doi: 10.1038/srep33813.

19.

Genome Sequence of Fusarium Isolate MYA-4552 from the Midgut of Anoplophora glabripennis, an Invasive, Wood-Boring Beetle.

Herr JR, Scully ED, Geib SM, Hoover K, Carlson JE, Geiser DM.

Genome Announc. 2016 Jul 21;4(4). pii: e00544-16. doi: 10.1128/genomeA.00544-16.

20.

Identification of a carboxylesterase associated with resistance to naled in Bactrocera dorsalis (Hendel).

Hsu PK, Huang LH, Geib SM, Hsu JC.

Pestic Biochem Physiol. 2016 Jul;131:24-31. doi: 10.1016/j.pestbp.2016.02.001. Epub 2016 Feb 4.

PMID:
27265823
21.

LARVAL X-RAY IRRADIATION INFLUENCES PROTEIN EXPRESSION IN PUPAE OF THE ORIENTAL FRUIT FLY, BACTROCERA DORSALIS.

Chang CL, Goodman CL, Ringbauer J, Geib SM, Stanley D.

Arch Insect Biochem Physiol. 2016 Jul;92(3):192-209. doi: 10.1002/arch.21330. Epub 2016 Apr 15.

PMID:
27079560
22.

De novo construction of an expanded transcriptome assembly for the western tarnished plant bug, Lygus hesperus.

Tassone EE, Geib SM, Hall B, Fabrick JA, Brent CS, Hull JJ.

Gigascience. 2016 Jan 28;5:6. doi: 10.1186/s13742-016-0109-6. eCollection 2016.

23.

Comprehensive annotation of Glossina pallidipes salivary gland hypertrophy virus from Ethiopian tsetse flies: a proteogenomics approach.

Abd-Alla AM, Kariithi HM, Cousserans F, Parker NJ, İnce İA, Scully ED, Boeren S, Geib SM, Mekonnen S, Vlak JM, Parker AG, Vreysen MJ, Bergoin M.

J Gen Virol. 2016 Apr;97(4):1010-31. doi: 10.1099/jgv.0.000409. Epub 2016 Jan 21.

24.

Molecular Markers Detect Cryptic Predation on Coffee Berry Borer (Coleoptera: Curculionidae) by Silvanid and Laemophloeid Flat Bark Beetles (Coleoptera: Silvanidae, Laemophloeidae) in Coffee Beans.

Sim SB, Yoneishi NM, Brill E, Geib SM, Follett PA.

J Econ Entomol. 2016 Feb;109(1):100-5. doi: 10.1093/jee/tov284. Epub 2015 Oct 19.

PMID:
26487745
25.
26.

Genetic Diversity of Bactrocera dorsalis (Diptera: Tephritidae) on the Hawaiian Islands: Implications for an Introduction Pathway Into California.

Barr NB, Ledezma LA, Leblanc L, San Jose M, Rubinoff D, Geib SM, Fujita B, Bartels DW, Garza D, Kerr P, Hauser M, Gaimari S.

J Econ Entomol. 2014 Oct 1;107(5):1946-58. doi: 10.1603/EC13482.

PMID:
26309285
27.

Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression.

Calla B, Sim SB, Hall B, DeRego T, Liang GH, Geib SM.

Gigascience. 2015 Aug 4;4:36. doi: 10.1186/s13742-015-0075-4. eCollection 2015.

28.

Draft Genome Sequence of Erwinia tracheiphila, an Economically Important Bacterial Pathogen of Cucurbits.

Shapiro LR, Scully ED, Roberts D, Straub TJ, Geib SM, Park J, Stephenson AG, Salaau Rojas E, Liu Q, Beattie G, Gleason M, De Moraes CM, Mescher MC, Fleischer SG, Kolter R, Pierce N, Zhaxybayeva O.

Genome Announc. 2015 Jun 4;3(3). pii: e00482-15. doi: 10.1128/genomeA.00482-15.

29.

Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae.

Sim SB, Calla B, Hall B, DeRego T, Geib SM.

Gigascience. 2015 Mar 31;4:14. doi: 10.1186/s13742-015-0053-x. eCollection 2015.

30.

Pupal X-ray irradiation influences protein expression in adults of the oriental fruit fly, Bactrocera dorsalis.

Chang CL, Villalun M, Geib SM, Goodman CL, Ringbauer J, Stanley D.

J Insect Physiol. 2015 May;76:7-16. doi: 10.1016/j.jinsphys.2015.03.002. Epub 2015 Mar 12.

PMID:
25772096
31.

A qPCR-based method for detecting parasitism of Fopius arisanus (Sonan) in oriental fruit flies, Bactrocera dorsalis (Hendel).

Liang GH, Jang EB, Heller WP, Chang CL, Chen JH, Zhang FP, Geib SM.

Pest Manag Sci. 2015 Dec;71(12):1666-74. doi: 10.1002/ps.3976. Epub 2015 Feb 4.

PMID:
25641860
32.
33.

Transcriptome-based identification of ABC transporters in the western tarnished plant bug Lygus hesperus.

Hull JJ, Chaney K, Geib SM, Fabrick JA, Brent CS, Walsh D, Lavine LC.

PLoS One. 2014 Nov 17;9(11):e113046. doi: 10.1371/journal.pone.0113046. eCollection 2014.

34.

A computer model of insect traps in a landscape.

Manoukis NC, Hall B, Geib SM.

Sci Rep. 2014 Nov 12;4:7015. doi: 10.1038/srep07015.

36.
37.

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle.

Scully ED, Hoover K, Carlson JE, Tien M, Geib SM.

BMC Genomics. 2013 Dec 4;14:850. doi: 10.1186/1471-2164-14-850.

38.

Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.

Scully ED, Geib SM, Hoover K, Tien M, Tringe SG, Barry KW, Glavina del Rio T, Chovatia M, Herr JR, Carlson JE.

PLoS One. 2013 Sep 4;8(9):e73827. doi: 10.1371/journal.pone.0073827. eCollection 2013.

39.

Sequencing and de novo assembly of the western tarnished plant bug (Lygus hesperus) transcriptome.

Hull JJ, Geib SM, Fabrick JA, Brent CS.

PLoS One. 2013;8(1):e55105. doi: 10.1371/journal.pone.0055105. Epub 2013 Jan 24.

40.

Truncated transcripts of nicotinic acetylcholine subunit gene Bdα6 are associated with spinosad resistance in Bactrocera dorsalis.

Hsu JC, Feng HT, Wu WJ, Geib SM, Mao CH, Vontas J.

Insect Biochem Mol Biol. 2012 Oct;42(10):806-15. doi: 10.1016/j.ibmb.2012.07.010. Epub 2012 Aug 5.

PMID:
22898623
41.

Effects of laccase on lignin depolymerization and enzymatic hydrolysis of ensiled corn stover.

Chen Q, Marshall MN, Geib SM, Tien M, Richard TL.

Bioresour Technol. 2012 Aug;117:186-92. doi: 10.1016/j.biortech.2012.04.085. Epub 2012 Apr 28.

PMID:
22613895
42.

Proteomic analysis of Fusarium solani isolated from the Asian longhorned beetle, Anoplophora glabripennis.

Scully ED, Hoover K, Carlson J, Tien M, Geib SM.

PLoS One. 2012;7(4):e32990. doi: 10.1371/journal.pone.0032990. Epub 2012 Apr 9.

43.

Phylogenetic Analysis of Fusarium solani Associated with the Asian Longhorned Beetle, Anoplophora glabripennis.

Geib SM, Scully ED, Jimenez-Gasco Mdel M, Carlson JE, Tien M, Hoover K.

Insects. 2012 Feb 10;3(1):141-60. doi: 10.3390/insects3010141.

44.

Genome sequence of a cellulose-producing bacterium, Gluconacetobacter hansenii ATCC 23769.

Iyer PR, Geib SM, Catchmark J, Kao TH, Tien M.

J Bacteriol. 2010 Aug;192(16):4256-7. doi: 10.1128/JB.00588-10. Epub 2010 Jun 11.

45.

Effect of host tree species on cellulase activity and bacterial community composition in the gut of larval Asian longhorned beetle.

Geib SM, Jimenez-Gasco Mdel M, Carlson JE, Tien M, Hoover K.

Environ Entomol. 2009 Jun;38(3):686-99.

PMID:
19508777
46.

Microbial community profiling to investigate transmission of bacteria between life stages of the wood-boring beetle, Anoplophora glabripennis.

Geib SM, Jimenez-Gasco Mdel M, Carlson JE, Tien M, Jabbour R, Hoover K.

Microb Ecol. 2009 Jul;58(1):199-211. doi: 10.1007/s00248-009-9501-4. Epub 2009 Mar 11.

PMID:
19277770
47.

Lignin degradation in wood-feeding insects.

Geib SM, Filley TR, Hatcher PG, Hoover K, Carlson JE, Jimenez-Gasco Mdel M, Nakagawa-Izumi A, Sleighter RL, Tien M.

Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12932-7. doi: 10.1073/pnas.0805257105. Epub 2008 Aug 25.

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