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Rapid Nanopore Whole-Genome Sequencing for Anthrax Emergency Preparedness.

McLaughlin HP, Bugrysheva JV, Conley AB, Gulvik CA, Cherney B, Kolton CB, Marston CK, Saile E, Swaney E, Lonsway D, Gargis AS, Kongphet-Tran T, Lascols C, Michel P, Villanueva J, Hoffmaster AR, Gee JE, Sue D.

Emerg Infect Dis. 2020 Feb;26(2):358-361. doi: 10.3201/eid2602.191351.


Melioidosis after Hurricanes Irma and Maria, St. Thomas/St. John District, US Virgin Islands, October 2017.

Guendel I, Ekpo LL, Hinkle MK, Harrison CJ, Blaney DD, Gee JE, Elrod MG, Boyd S, Gulvik CA, Liu L, Hoffmaster AR, Ellis BR, Hunte-Ceasar T, Ellis EM.

Emerg Infect Dis. 2019 Oct;25(10):1952-1955. doi: 10.3201/eid2510.180959.


Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico.

Hall CM, Jaramillo S, Jimenez R, Stone NE, Centner H, Busch JD, Bratsch N, Roe CC, Gee JE, Hoffmaster AR, Rivera-Garcia S, Soltero F, Ryff K, Perez-Padilla J, Keim P, Sahl JW, Wagner DM.

PLoS Negl Trop Dis. 2019 Sep 5;13(9):e0007727. doi: 10.1371/journal.pntd.0007727. eCollection 2019 Sep.


Differentiating New from Newly Detected: Melioidosis in Yap, Federated States of Micronesia.

Nolen LD, Lirow E, Gee JE, Elrod MG, Kolton CB, Liu L, Bower WA, Person MK, Marfel M, Blaney DD.

Am J Trop Med Hyg. 2019 Aug;101(2):323-327. doi: 10.4269/ajtmh.19-0253.


CNS Melioidosis in a Traveler Returning from Cabo, Mexico.

Donahue MA, Newcomb G, Spinella S, Prasad P, Liesveld J, Egan CT, Smith GL, Newman AP, Bower WA, Blaney DD, Gee JE, Elrod MG, Chuang S, Babu TM.

Open Forum Infect Dis. 2019 Jan 10;6(2):ofz005. doi: 10.1093/ofid/ofz005. eCollection 2019 Feb.


Analysis of Whole-Genome Sequences for the Prediction of Penicillin Resistance and β-Lactamase Activity in Bacillus anthracis.

Gargis AS, McLaughlin HP, Conley AB, Lascols C, Michel PA, Gee JE, Marston CK, Kolton CB, Rodriguez-R LM, Hoffmaster AR, Weigel LM, Sue D.

mSystems. 2018 Dec 11;3(6). pii: e00154-18. doi: 10.1128/mSystems.00154-18. eCollection 2018 Nov-Dec.


Burkholderia thailandensis Isolated from Infected Wound, Arkansas, USA.

Gee JE, Elrod MG, Gulvik CA, Haselow DT, Waters C, Liu L, Hoffmaster AR.

Emerg Infect Dis. 2018 Nov;24(11):2091-2094. doi: 10.3201/eid2411.180821.


Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains.

Pena-Gonzalez A, Rodriguez-R LM, Marston CK, Gee JE, Gulvik CA, Kolton CB, Saile E, Frace M, Hoffmaster AR, Konstantinidis KT.

mSystems. 2018 Aug 14;3(4). pii: e00065-18. doi: 10.1128/mSystems.00065-18. eCollection 2018 Jul-Aug.


Melioidosis is in the Americas: A Call to Action for Diagnosing and Treating the Disease.

Torres AG, Montufar FE, Gee JE, Hoffmaster AR, Elrod MG, Duarte-Valderrama C, Huertas MG, Blaney DD.

Am J Trop Med Hyg. 2018 Sep;99(3):563-564. doi: 10.4269/ajtmh.18-0418. Epub 2018 Jul 12.


Bacillus anthracis gamma phage lysis among soil bacteria: an update on test specificity.

Kolton CB, Podnecky NL, Shadomy SV, Gee JE, Hoffmaster AR.

BMC Res Notes. 2017 Nov 16;10(1):598. doi: 10.1186/s13104-017-2919-8.


Rapid Filter-Based Detection and Culture of Burkholderia pseudomallei from Small Volumes of Urine.

Michel PA, Lascols C, Gee JE, Weigel LM, Sue D.

J Clin Microbiol. 2017 Sep;55(9):2698-2707. doi: 10.1128/JCM.00764-17. Epub 2017 Jun 21.


Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere.

Gee JE, Gulvik CA, Elrod MG, Batra D, Rowe LA, Sheth M, Hoffmaster AR.

Emerg Infect Dis. 2017 Jul;23(7):1133-1138. doi: 10.3201/eid2307.161978.


Antibiotic Resistance Markers in Burkholderia pseudomallei Strain Bp1651 Identified by Genome Sequence Analysis.

Bugrysheva JV, Sue D, Gee JE, Elrod MG, Hoffmaster AR, Randall LB, Chirakul S, Tuanyok A, Schweizer HP, Weigel LM.

Antimicrob Agents Chemother. 2017 May 24;61(6). pii: e00010-17. doi: 10.1128/AAC.00010-17. Print 2017 Jun.


Burkholderia humptydooensis sp. nov., a New Species Related to Burkholderia thailandensis and the Fifth Member of the Burkholderia pseudomallei Complex.

Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, Kreutzer L, Georgi E, Gee JE, Bowen RA, Ladner JT, Lovett S, Koroleva G, Palacios G, Wagner DM, Currie BJ, Keim P.

Appl Environ Microbiol. 2017 Feb 15;83(5). pii: e02802-16. doi: 10.1128/AEM.02802-16. Print 2017 Mar 1.


Anthrax Toxin-Expressing Bacillus cereus Isolated from an Anthrax-Like Eschar.

Marston CK, Ibrahim H, Lee P, Churchwell G, Gumke M, Stanek D, Gee JE, Boyer AE, Gallegos-Candela M, Barr JR, Li H, Boulay D, Cronin L, Quinn CP, Hoffmaster AR.

PLoS One. 2016 Jun 3;11(6):e0156987. doi: 10.1371/journal.pone.0156987. eCollection 2016.


Lack of Evidence for Plague or Anthrax on the New York City Subway.

Ackelsberg J, Rakeman J, Hughes S, Petersen J, Mead P, Schriefer M, Kingry L, Hoffmaster A, Gee JE.

Cell Syst. 2015 Jul 29;1(1):4-5. doi: 10.1016/j.cels.2015.07.008. Epub 2015 Jul 29.


Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate.

Bugrysheva JV, Sue D, Hakovirta J, Loparev VN, Knipe K, Sammons SA, Ranganathan-Ganakammal S, Changayil S, Srinivasamoorthy G, Weil MR, Tatusov RL, Gee JE, Elrod MG, Hoffmaster AR, Weigel LM.

Genome Announc. 2015 Dec 3;3(6). pii: e01427-15. doi: 10.1128/genomeA.01427-15.


A Review of Melioidosis Cases in the Americas.

Benoit TJ, Blaney DD, Doker TJ, Gee JE, Elrod MG, Rolim DB, Inglis TJ, Hoffmaster AR, Bower WA, Walke HT.

Am J Trop Med Hyg. 2015 Dec;93(6):1134-9. doi: 10.4269/ajtmh.15-0405. Epub 2015 Oct 12. Review.


Burkholderia pseudomallei Infection in US Traveler Returning from Mexico, 2014.

Cheng JW, Hayden MK, Singh K, Heimler I, Gee JE, Proia L, Sha BE.

Emerg Infect Dis. 2015 Oct;21(10):1884-5. doi: 10.3201/eid2110.150815. No abstract available.


Melioidosis Cases and Selected Reports of Occupational Exposures to Burkholderia pseudomallei--United States, 2008-2013.

Benoit TJ, Blaney DD, Gee JE, Elrod MG, Hoffmaster AR, Doker TJ, Bower WA, Walke HT; Centers for Disease Control and Prevention (CDC).

MMWR Surveill Summ. 2015 Jul 3;64(5):1-9.


Melioidosis diagnostic workshop, 2013.

Hoffmaster AR, AuCoin D, Baccam P, Baggett HC, Baird R, Bhengsri S, Blaney DD, Brett PJ, Brooks TJ, Brown KA, Chantratita N, Cheng AC, Dance DA, Decuypere S, Defenbaugh D, Gee JE, Houghton R, Jorakate P, Lertmemongkolchai G, Limmathurotsakul D, Merlin TL, Mukhopadhyay C, Norton R, Peacock SJ, Rolim DB, Simpson AJ, Steinmetz I, Stoddard RA, Stokes MM, Sue D, Tuanyok A, Whistler T, Wuthiekanun V, Walke HT.

Emerg Infect Dis. 2015 Feb;21(2). doi: 10.3201/eid2102.141045.


Contact investigation of melioidosis cases reveals regional endemicity in Puerto Rico.

Doker TJ, Sharp TM, Rivera-Garcia B, Perez-Padilla J, Benoit TJ, Ellis EM, Elrod MG, Gee JE, Shieh WJ, Beesley CA, Ryff KR, Traxler RM, Galloway RL, Haberling DL, Waller LA, Shadomy SV, Bower WA, Hoffmaster AR, Walke HT, Blaney DD.

Clin Infect Dis. 2015 Jan 15;60(2):243-50. doi: 10.1093/cid/ciu764. Epub 2014 Sep 30.


Fatal Burkholderia pseudomallei infection initially reported as a Bacillus species, Ohio, 2013.

Doker TJ, Quinn CL, Salehi ED, Sherwood JJ, Benoit TJ, Glass Elrod M, Gee JE, Shadomy SV, Bower WA, Hoffmaster AR, Walke HT, Blaney DD, DiOrio MS; Melioidosis Investigation Team.

Am J Trop Med Hyg. 2014 Oct;91(4):743-6. doi: 10.4269/ajtmh.14-0172. Epub 2014 Aug 4.


Draft Genome Sequence of Bacillus cereus Strain BcFL2013, a Clinical Isolate Similar to G9241.

Gee JE, Marston CK, Sammons SA, Burroughs MA, Hoffmaster AR.

Genome Announc. 2014 May 29;2(3). pii: e00469-14. doi: 10.1128/genomeA.00469-14.


Evaluation of a latex agglutination assay for the identification of Burkholderia pseudomallei and Burkholderia mallei.

Duval BD, Elrod MG, Gee JE, Chantratita N, Tandhavanant S, Limmathurotsakul D, Hoffmaster AR.

Am J Trop Med Hyg. 2014 Jun;90(6):1043-6. doi: 10.4269/ajtmh.14-0025. Epub 2014 Apr 7.


Burkholderia pseudomallei type G in Western Hemisphere.

Gee JE, Allender CJ, Tuanyok A, Elrod MG, Hoffmaster AR.

Emerg Infect Dis. 2014 Apr;20(4):682-4. doi: 10.3201/eid2004.130960.


Burkholderia pseudomallei isolates in 2 pet iguanas, California, USA.

Zehnder AM, Hawkins MG, Koski MA, Lifland B, Byrne BA, Swanson AA, Rood MP, Gee JE, Elrod MG, Beesley CA, Blaney DD, Ventura J, Hoffmaster AR, Beeler ES.

Emerg Infect Dis. 2014 Feb;20(2):304-6. doi: 10.3201/eid2002.131314.


Natural infection of Burkholderia pseudomallei in an imported pigtail macaque (Macaca nemestrina) and management of the exposed colony.

Johnson CH, Skinner BL, Dietz SM, Blaney D, Engel RM, Lathrop GW, Hoffmaster AR, Gee JE, Elrod MG, Powell N, Walke H.

Comp Med. 2013;63(6):528-35.


Contaminated ventilator air flow sensor linked to Bacillus cereus colonization of newborns.

Turabelidze G, Gee JE, Hoffmaster AR, Manian F, Butler C, Byrd D, Schildknecht S, Hauser LC, Duncan M, Ferrett R, Evans D, Talley C.

Emerg Infect Dis. 2013 May;19(5):781-3. doi: 10.3201/eid1905.12039.


Comparison of DNA extraction kits for detection of Burkholderia pseudomallei in spiked human whole blood using real-time PCR.

Podnecky NL, Elrod MG, Newton BR, Dauphin LA, Shi J, Chawalchitiporn S, Baggett HC, Hoffmaster AR, Gee JE.

PLoS One. 2013;8(2):e58032. doi: 10.1371/journal.pone.0058032. Epub 2013 Feb 27.


Workshop on treatment of and postexposure prophylaxis for Burkholderia pseudomallei and B. mallei Infection, 2010.

Lipsitz R, Garges S, Aurigemma R, Baccam P, Blaney DD, Cheng AC, Currie BJ, Dance D, Gee JE, Larsen J, Limmathurotsakul D, Morrow MG, Norton R, O'Mara E, Peacock SJ, Pesik N, Rogers LP, Schweizer HP, Steinmetz I, Tan G, Tan P, Wiersinga WJ, Wuthiekanun V, Smith TL.

Emerg Infect Dis. 2012 Dec;18(12):e2. doi: 10.3201/eid1812.120638.


Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications.

Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, Glass MB, Gee JE, Wuthiekanun V, Warner JM, Baker A, Foster JT, Tan P, Tuanyok A, Limmathurotsakul D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Pearson T.

PLoS One. 2012;7(5):e37723. doi: 10.1371/journal.pone.0037723. Epub 2012 May 18.


Burkholderia pseudomallei infection in a child with cystic fibrosis: acquisition in the Western Hemisphere.

O'Sullivan BP, Torres B, Conidi G, Smole S, Gauthier C, Stauffer KE, Glass MB, Gee JE, Blaney D, Smith TL.

Chest. 2011 Jul;140(1):239-242. doi: 10.1378/chest.10-3336.


Characterization of Burkholderia rhizoxinica and B. endofungorum isolated from clinical specimens.

Gee JE, Glass MB, Lackner G, Helsel LO, Daneshvar M, Hollis DG, Jordan J, Morey R, Steigerwalt A, Hertweck C.

PLoS One. 2011 Jan 18;6(1):e15731. doi: 10.1371/journal.pone.0015731.


Hybrid dynamic stabilization with posterior spinal fusion in the lumbar spine.

Hudson WR, Gee JE, Billys JB, Castellvi AE.

SAS J. 2011 Jun 1;5(2):36-43. doi: 10.1016/j.esas.2011.01.003. eCollection 2011.


Identification and characterization of clinical Bacillus spp. isolates phenotypically similar to Bacillus anthracis.

Beesley CA, Vanner CL, Helsel LO, Gee JE, Hoffmaster AR.

FEMS Microbiol Lett. 2010 Dec;313(1):47-53. doi: 10.1111/j.1574-6968.2010.02120.x. Epub 2010 Sep 30.


High-redundancy draft sequencing of 15 clinical and environmental Burkholderia strains.

Mukhopadhyay S, Thomason MK, Lentz S, Nolan N, Willner K, Gee JE, Glass MB, Inglis TJ, Merritt A, Levy A, Sozhamannan S, Mateczun A, Read TD.

J Bacteriol. 2010 Dec;192(23):6313-4. doi: 10.1128/JB.00991-10. Epub 2010 Sep 24.


Characterization of novel Brucella strains originating from wild native rodent species in North Queensland, Australia.

Tiller RV, Gee JE, Frace MA, Taylor TK, Setubal JC, Hoffmaster AR, De BK.

Appl Environ Microbiol. 2010 Sep;76(17):5837-45. doi: 10.1128/AEM.00620-10. Epub 2010 Jul 16.


Identification of an unusual Brucella strain (BO2) from a lung biopsy in a 52 year-old patient with chronic destructive pneumonia.

Tiller RV, Gee JE, Lonsway DR, Gribble S, Bell SC, Jennison AV, Bates J, Coulter C, Hoffmaster AR, De BK.

BMC Microbiol. 2010 Jan 27;10:23. doi: 10.1186/1471-2180-10-23.


Safety assessment of recalled Haemophilus influenzae type b (Hib) conjugate vaccines--United States, 2007-2008.

Huang WT, Chang S, Miller ER, Woo EJ, Hoffmaster AR, Gee JE, Clark TA, Iskander JK, Ball R, Broder KR.

Pharmacoepidemiol Drug Saf. 2010 Mar;19(3):306-10. doi: 10.1002/pds.1909.


Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.

Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P.

BMC Biol. 2009 Nov 18;7:78. doi: 10.1186/1741-7007-7-78.


Detection of pathogenic Leptospira spp. through TaqMan polymerase chain reaction targeting the LipL32 gene.

Stoddard RA, Gee JE, Wilkins PP, McCaustland K, Hoffmaster AR.

Diagn Microbiol Infect Dis. 2009 Jul;64(3):247-55. doi: 10.1016/j.diagmicrobio.2009.03.014. Epub 2009 Apr 22.


Genetic diversity of clinical isolates of Bacillus cereus using multilocus sequence typing.

Hoffmaster AR, Novak RT, Marston CK, Gee JE, Helsel L, Pruckler JM, Wilkins PP.

BMC Microbiol. 2008 Nov 6;8:191. doi: 10.1186/1471-2180-8-191.


Management of accidental laboratory exposure to Burkholderia pseudomallei and B. mallei.

Peacock SJ, Schweizer HP, Dance DA, Smith TL, Gee JE, Wuthiekanun V, DeShazer D, Steinmetz I, Tan P, Currie BJ.

Emerg Infect Dis. 2008 Jul;14(7):e2. doi: 10.3201/eid1407.071501.


Recovery of a Burkholderia thailandensis-like isolate from an Australian water source.

Gee JE, Glass MB, Novak RT, Gal D, Mayo MJ, Steigerwalt AG, Wilkins PP, Currie BJ.

BMC Microbiol. 2008 Apr 2;8:54. doi: 10.1186/1471-2180-8-54.


Novel Brucella strain (BO1) associated with a prosthetic breast implant infection.

De BK, Stauffer L, Koylass MS, Sharp SE, Gee JE, Helsel LO, Steigerwalt AG, Vega R, Clark TA, Daneshvar MI, Wilkins PP, Whatmore AM.

J Clin Microbiol. 2008 Jan;46(1):43-9. Epub 2007 Oct 31.


Pneumonia and septicemia caused by Burkholderia thailandensis in the United States.

Glass MB, Gee JE, Steigerwalt AG, Cavuoti D, Barton T, Hardy RD, Godoy D, Spratt BG, Clark TA, Wilkins PP.

J Clin Microbiol. 2006 Dec;44(12):4601-4. Epub 2006 Oct 18.


Burkholderia oklahomensis sp. nov., a Burkholderia pseudomallei-like species formerly known as the Oklahoma strain of Pseudomonas pseudomallei.

Glass MB, Steigerwalt AG, Jordan JG, Wilkins PP, Gee JE.

Int J Syst Evol Microbiol. 2006 Sep;56(Pt 9):2171-6.


Characterization of Bacillus cereus isolates associated with fatal pneumonias: strains are closely related to Bacillus anthracis and harbor B. anthracis virulence genes.

Hoffmaster AR, Hill KK, Gee JE, Marston CK, De BK, Popovic T, Sue D, Wilkins PP, Avashia SB, Drumgoole R, Helma CH, Ticknor LO, Okinaka RT, Jackson PJ.

J Clin Microbiol. 2006 Sep;44(9):3352-60.


Clinical evaluation of a type III secretion system real-time PCR assay for diagnosing melioidosis.

Meumann EM, Novak RT, Gal D, Kaestli ME, Mayo M, Hanson JP, Spencer E, Glass MB, Gee JE, Wilkins PP, Currie BJ.

J Clin Microbiol. 2006 Aug;44(8):3028-30.

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