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Items: 7

1.

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ.

PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr.

2.

Closing the gap between palaeontological and neontological speciation and extinction rate estimates.

Silvestro D, Warnock RCM, Gavryushkina A, Stadler T.

Nat Commun. 2018 Dec 7;9(1):5237. doi: 10.1038/s41467-018-07622-y.

3.

The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes.

Stadler T, Gavryushkina A, Warnock RCM, Drummond AJ, Heath TA.

J Theor Biol. 2018 Jun 14;447:41-55. doi: 10.1016/j.jtbi.2018.03.005. Epub 2018 Mar 14.

4.

Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins.

Gavryushkina A, Heath TA, Ksepka DT, Stadler T, Welch D, Drummond AJ.

Syst Biol. 2017 Jan 1;66(1):57-73. doi: 10.1093/sysbio/syw060.

5.

Sources of HIV infection among men having sex with men and implications for prevention.

Ratmann O, van Sighem A, Bezemer D, Gavryushkina A, Jurriaans S, Wensing A, de Wolf F, Reiss P, Fraser C; ATHENA observational cohort.

Sci Transl Med. 2016 Jan 6;8(320):320ra2. doi: 10.1126/scitranslmed.aad1863.

6.

Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration.

Gavryushkina A, Welch D, Stadler T, Drummond AJ.

PLoS Comput Biol. 2014 Dec 4;10(12):e1003919. doi: 10.1371/journal.pcbi.1003919. eCollection 2014 Dec.

7.

Recursive algorithms for phylogenetic tree counting.

Gavryushkina A, Welch D, Drummond AJ.

Algorithms Mol Biol. 2013 Oct 28;8(1):26. doi: 10.1186/1748-7188-8-26.

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