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Items: 10

1.

Inferring protein 3D structure from deep mutation scans.

Rollins NJ, Brock KP, Poelwijk FJ, Stiffler MA, Gauthier NP, Sander C, Marks DS.

Nat Genet. 2019 Jul;51(7):1170-1176. doi: 10.1038/s41588-019-0432-9. Epub 2019 Jun 17.

PMID:
31209393
2.

Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer.

Ebhardt HA, Root A, Liu Y, Gauthier NP, Sander C, Aebersold R.

NPJ Syst Biol Appl. 2018 Jul 2;4:26. doi: 10.1038/s41540-018-0064-1. eCollection 2018.

3.

Pan-Cancer Analysis of Mutation Hotspots in Protein Domains.

Miller ML, Reznik E, Gauthier NP, Aksoy BA, Korkut A, Gao J, Ciriello G, Schultz N, Sander C.

Cell Syst. 2015 Sep 23;1(3):197-209. doi: 10.1016/j.cels.2015.08.014. Epub 2015 Sep 23.

4.

MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer.

Gauthier NP, Reznik E, Gao J, Sumer SO, Schultz N, Sander C, Miller ML.

Nucleic Acids Res. 2016 Jan 4;44(D1):D986-91. doi: 10.1093/nar/gkv1132. Epub 2015 Nov 20.

5.

Perturbation biology: inferring signaling networks in cellular systems.

Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, Sander C.

PLoS Comput Biol. 2013;9(12):e1003290. doi: 10.1371/journal.pcbi.1003290. Epub 2013 Dec 19.

6.

Cell-selective labeling using amino acid precursors for proteomic studies of multicellular environments.

Gauthier NP, Soufi B, Walkowicz WE, Pedicord VA, Mavrakis KJ, Macek B, Gin DY, Sander C, Miller ML.

Nat Methods. 2013 Aug;10(8):768-73. doi: 10.1038/nmeth.2529. Epub 2013 Jun 30.

7.

TRIM3, a tumor suppressor linked to regulation of p21(Waf1/Cip1.).

Liu Y, Raheja R, Yeh N, Ciznadija D, Pedraza AM, Ozawa T, Hukkelhoven E, Erdjument-Bromage H, Tempst P, Gauthier NP, Brennan C, Holland EC, Koff A.

Oncogene. 2014 Jan 16;33(3):308-15. doi: 10.1038/onc.2012.596. Epub 2013 Jan 14.

8.

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.

Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS.

Nucleic Acids Res. 2010 Jan;38(Database issue):D699-702. doi: 10.1093/nar/gkp1044. Epub 2009 Nov 24.

9.

Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments.

Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. Epub 2007 Oct 16.

10.

Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay.

Perreard L, Fan C, Quackenbush JF, Mullins M, Gauthier NP, Nelson E, Mone M, Hansen H, Buys SS, Rasmussen K, Orrico AR, Dreher D, Walters R, Parker J, Hu Z, He X, Palazzo JP, Olopade OI, Szabo A, Perou CM, Bernard PS.

Breast Cancer Res. 2006;8(2):R23. Epub 2006 Apr 20.

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