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Items: 32

1.

Circadian Clocks and UPR: New Twists as the Story Unfolds.

Milev NB, Gatfield D.

Dev Cell. 2018 Jan 8;44(1):7-9. doi: 10.1016/j.devcel.2017.12.018. Epub 2018 Jan 8.

PMID:
29316442
2.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

3.

Translational contributions to tissue specificity in rhythmic and constitutive gene expression.

Castelo-Szekely V, Arpat AB, Janich P, Gatfield D.

Genome Biol. 2017 Jun 16;18(1):116. doi: 10.1186/s13059-017-1222-2.

4.

Diurnal Oscillations in Liver Mass and Cell Size Accompany Ribosome Assembly Cycles.

Sinturel F, Gerber A, Mauvoisin D, Wang J, Gatfield D, Stubblefield JJ, Green CB, Gachon F, Schibler U.

Cell. 2017 May 4;169(4):651-663.e14. doi: 10.1016/j.cell.2017.04.015.

5.

Analyzing the temporal regulation of translation efficiency in mouse liver.

Janich P, Arpat AB, Castelo-Szekely V, Gatfield D.

Genom Data. 2016 Mar 18;8:41-4. doi: 10.1016/j.gdata.2016.03.004. eCollection 2016 Jun.

6.

Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames.

Janich P, Arpat AB, Castelo-Szekely V, Lopes M, Gatfield D.

Genome Res. 2015 Dec;25(12):1848-59. doi: 10.1101/gr.195404.115. Epub 2015 Oct 20.

7.

A neuron-specific deletion of the microRNA-processing enzyme DICER induces severe but transient obesity in mice.

Mang GM, Pradervand S, Du NH, Arpat AB, Preitner F, Wigger L, Gatfield D, Franken P.

PLoS One. 2015 Jan 28;10(1):e0116760. doi: 10.1371/journal.pone.0116760. eCollection 2015.

8.

Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells.

Bieler J, Cannavo R, Gustafson K, Gobet C, Gatfield D, Naef F.

Mol Syst Biol. 2014 Jul 15;10:739. doi: 10.15252/msb.20145218.

9.

MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.

Du NH, Arpat AB, De Matos M, Gatfield D.

Elife. 2014 May 27;3:e02510. doi: 10.7554/eLife.02510.

10.

CAVIN-3 regulates circadian period length and PER:CRY protein abundance and interactions.

Schneider K, Köcher T, Andersin T, Kurzchalia T, Schibler U, Gatfield D.

EMBO Rep. 2012 Dec;13(12):1138-44. doi: 10.1038/embor.2012.158. Epub 2012 Oct 19.

11.

Mammalian genes are transcribed with widely different bursting kinetics.

Suter DM, Molina N, Gatfield D, Schneider K, Schibler U, Naef F.

Science. 2011 Apr 22;332(6028):472-4. doi: 10.1126/science.1198817. Epub 2011 Mar 17.

12.

MicroRNA-122 modulates the rhythmic expression profile of the circadian deadenylase Nocturnin in mouse liver.

Kojima S, Gatfield D, Esau CC, Green CB.

PLoS One. 2010 Jun 22;5(6):e11264. doi: 10.1371/journal.pone.0011264.

13.

REV-ERBalpha participates in circadian SREBP signaling and bile acid homeostasis.

Le Martelot G, Claudel T, Gatfield D, Schaad O, Kornmann B, Lo Sasso G, Moschetta A, Schibler U.

PLoS Biol. 2009 Sep;7(9):e1000181. doi: 10.1371/journal.pbio.1000181. Epub 2009 Sep 1.

14.

Integration of microRNA miR-122 in hepatic circadian gene expression.

Gatfield D, Le Martelot G, Vejnar CE, Gerlach D, Schaad O, Fleury-Olela F, Ruskeepää AL, Oresic M, Esau CC, Zdobnov EM, Schibler U.

Genes Dev. 2009 Jun 1;23(11):1313-26. doi: 10.1101/gad.1781009.

15.

Circadian glucose homeostasis requires compensatory interference between brain and liver clocks.

Gatfield D, Schibler U.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14753-4. doi: 10.1073/pnas.0807861105. Epub 2008 Sep 23. No abstract available.

16.

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.

Asher G, Gatfield D, Stratmann M, Reinke H, Dibner C, Kreppel F, Mostoslavsky R, Alt FW, Schibler U.

Cell. 2008 Jul 25;134(2):317-28. doi: 10.1016/j.cell.2008.06.050.

17.

Physiology. Proteasomes keep the circadian clock ticking.

Gatfield D, Schibler U.

Science. 2007 May 25;316(5828):1135-6. Epub 2007 May 10. No abstract available.

PMID:
17495136
18.

A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay.

Behm-Ansmant I, Gatfield D, Rehwinkel J, Hilgers V, Izaurralde E.

EMBO J. 2007 Mar 21;26(6):1591-601. Epub 2007 Feb 22.

19.

Genome-wide oscillation of transcription in yeast.

Reinke H, Gatfield D.

Trends Biochem Sci. 2006 Apr;31(4):189-91. Epub 2006 Feb 24. Review.

PMID:
16500104
20.

A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing.

Rehwinkel J, Behm-Ansmant I, Gatfield D, Izaurralde E.

RNA. 2005 Nov;11(11):1640-7. Epub 2005 Sep 21.

21.

Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila.

Gatfield D, Izaurralde E.

Nature. 2004 Jun 3;429(6991):575-8.

PMID:
15175755
22.

An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay.

Palacios IM, Gatfield D, St Johnston D, Izaurralde E.

Nature. 2004 Feb 19;427(6976):753-7.

PMID:
14973490
23.

Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways.

Gatfield D, Unterholzner L, Ciccarelli FD, Bork P, Izaurralde E.

EMBO J. 2003 Aug 1;22(15):3960-70.

24.

A novel mode of RBD-protein recognition in the Y14-Mago complex.

Fribourg S, Gatfield D, Izaurralde E, Conti E.

Nat Struct Biol. 2003 Jun;10(6):433-9.

PMID:
12730685
25.

REF1/Aly and the additional exon junction complex proteins are dispensable for nuclear mRNA export.

Gatfield D, Izaurralde E.

J Cell Biol. 2002 Nov 25;159(4):579-88. Epub 2002 Nov 18.

26.

The protein Mago provides a link between splicing and mRNA localization.

Le Hir H, Gatfield D, Braun IC, Forler D, Izaurralde E.

EMBO Rep. 2001 Dec;2(12):1119-24. Epub 2001 Nov 21.

27.

The DExH/D box protein HEL/UAP56 is essential for mRNA nuclear export in Drosophila.

Gatfield D, Le Hir H, Schmitt C, Braun IC, Köcher T, Wilm M, Izaurralde E.

Curr Biol. 2001 Oct 30;11(21):1716-21.

28.
29.

REF proteins mediate the export of spliced and unspliced mRNAs from the nucleus.

Rodrigues JP, Rode M, Gatfield D, Blencowe BJ, Carmo-Fonseca M, Izaurralde E.

Proc Natl Acad Sci U S A. 2001 Jan 30;98(3):1030-5. Epub 2001 Jan 23.

30.

Partial purification and characterization of acetyl coenzyme A: taxa-4(20),11(12)-dien-5alpha-ol O-acetyl transferase that catalyzes the first acylation step of taxol biosynthesis.

Walker K, Ketchum RE, Hezari M, Gatfield D, Goleniowski M, Barthol A, Croteau R.

Arch Biochem Biophys. 1999 Apr 15;364(2):273-9.

PMID:
10190984
31.
32.

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