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Items: 14

1.

Author Correction: The challenge of mapping the human connectome based on diffusion tractography.

Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, He R, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, De Santiago Requejo F, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M.

Nat Commun. 2019 Nov 4;10(1):5059. doi: 10.1038/s41467-019-12867-2.

2.

The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services.

Avesani P, McPherson B, Hayashi S, Caiafa CF, Henschel R, Garyfallidis E, Kitchell L, Bullock D, Patterson A, Olivetti E, Sporns O, Saykin AJ, Wang L, Dinov I, Hancock D, Caron B, Qian Y, Pestilli F.

Sci Data. 2019 May 23;6(1):69. doi: 10.1038/s41597-019-0073-y.

3.

The challenge of mapping the human connectome based on diffusion tractography.

Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, He R, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, Requejo FS, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M.

Nat Commun. 2017 Nov 7;8(1):1349. doi: 10.1038/s41467-017-01285-x. Erratum in: Nat Commun. 2019 Nov 4;10(1):5059.

4.

Recognition of white matter bundles using local and global streamline-based registration and clustering.

Garyfallidis E, Côté MA, Rheault F, Sidhu J, Hau J, Petit L, Fortin D, Cunanne S, Descoteaux M.

Neuroimage. 2018 Apr 15;170:283-295. doi: 10.1016/j.neuroimage.2017.07.015. Epub 2017 Jul 13. Review.

PMID:
28712994
5.

3D-SSF: A bio-inspired approach for dynamic multi-subject clustering of white matter tracts.

Chekir A, Hassas S, Descoteaux M, Côté M, Garyfallidis E, Oulebsir-Boumghar F.

Comput Biol Med. 2017 Apr 1;83:10-21. doi: 10.1016/j.compbiomed.2017.01.016. Epub 2017 Jan 27. Review.

PMID:
28188985
6.

Semi-Automatic Segmentation of Optic Radiations and LGN, and Their Relationship to EEG Alpha Waves.

Renauld E, Descoteaux M, Bernier M, Garyfallidis E, Whittingstall K.

PLoS One. 2016 Jul 6;11(7):e0156436. doi: 10.1371/journal.pone.0156436. eCollection 2016.

7.

Robust and efficient linear registration of white-matter fascicles in the space of streamlines.

Garyfallidis E, Ocegueda O, Wassermann D, Descoteaux M.

Neuroimage. 2015 Aug 15;117:124-40. doi: 10.1016/j.neuroimage.2015.05.016. Epub 2015 May 16.

PMID:
25987367
8.

Dynamic Changes in White Matter Abnormalities Correlate With Late Improvement and Deterioration Following TBI: A Diffusion Tensor Imaging Study.

Newcombe VF, Correia MM, Ledig C, Abate MG, Outtrim JG, Chatfield D, Geeraerts T, Manktelow AE, Garyfallidis E, Pickard JD, Sahakian BJ, Hutchinson PJ, Rueckert D, Coles JP, Williams GB, Menon DK.

Neurorehabil Neural Repair. 2016 Jan;30(1):49-62. doi: 10.1177/1545968315584004. Epub 2015 Apr 28.

PMID:
25921349
9.

Dipy, a library for the analysis of diffusion MRI data.

Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I; Dipy Contributors.

Front Neuroinform. 2014 Feb 21;8:8. doi: 10.3389/fninf.2014.00008. eCollection 2014.

10.

Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI.

Daducci A, Canales-Rodríguez EJ, Descoteaux M, Garyfallidis E, Gur Y, Lin YC, Mani M, Merlet S, Paquette M, Ramirez-Manzanares A, Reisert M, Reis Rodrigues P, Sepehrband F, Caruyer E, Choupan J, Deriche R, Jacob M, Menegaz G, Prčkovska V, Rivera M, Wiaux Y, Thiran JP.

IEEE Trans Med Imaging. 2014 Feb;33(2):384-99. doi: 10.1109/TMI.2013.2285500. Epub 2013 Oct 11.

PMID:
24132007
11.

Tractometer: towards validation of tractography pipelines.

Côté MA, Girard G, Boré A, Garyfallidis E, Houde JC, Descoteaux M.

Med Image Anal. 2013 Oct;17(7):844-57. doi: 10.1016/j.media.2013.03.009. Epub 2013 Apr 25.

PMID:
23706753
12.

QuickBundles, a Method for Tractography Simplification.

Garyfallidis E, Brett M, Correia MM, Williams GB, Nimmo-Smith I.

Front Neurosci. 2012 Dec 11;6:175. doi: 10.3389/fnins.2012.00175. eCollection 2012.

13.

Extracting biomarkers of autism from MEG resting-state functional connectivity networks.

Tsiaras V, Simos PG, Rezaie R, Sheth BR, Garyfallidis E, Castillo EM, Papanicolaou AC.

Comput Biol Med. 2011 Dec;41(12):1166-77. doi: 10.1016/j.compbiomed.2011.04.004. Epub 2011 May 17.

PMID:
21592470
14.

Reduced brain white matter integrity in trichotillomania: a diffusion tensor imaging study.

Chamberlain SR, Hampshire A, Menzies LA, Garyfallidis E, Grant JE, Odlaug BL, Craig K, Fineberg N, Sahakian BJ.

Arch Gen Psychiatry. 2010 Sep;67(9):965-71. doi: 10.1001/archgenpsychiatry.2010.109.

PMID:
20819990

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