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Items: 1 to 50 of 68

1.

Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed.

Hu H, Gutierrez-Gonzalez JJ, Liu X, Yeats TH, Garvin DF, Hoekenga OA, Sorrells ME, Gore MA, Jannink JL.

Plant Biotechnol J. 2019 Nov 1. doi: 10.1111/pbi.13286. [Epub ahead of print]

2.

Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon.

Onda Y, Inoue K, Sawada Y, Shimizu M, Takahagi K, Uehara-Yamaguchi Y, Hirai MY, Garvin DF, Mochida K.

Int J Mol Sci. 2019 May 11;20(9). pii: E2348. doi: 10.3390/ijms20092348.

3.

Genomic Dissection of Nonhost Resistance to Wheat Stem Rust in Brachypodium distachyon.

Della Coletta R, Hirsch CN, Rouse MN, Lorenz A, Garvin DF.

Mol Plant Microbe Interact. 2019 Apr;32(4):392-400. doi: 10.1094/MPMI-08-18-0220-R. Epub 2019 Feb 26.

PMID:
30261155
4.

Quantitative Trait Loci Associated with Drought Tolerance in Brachypodium distachyon.

Jiang Y, Wang X, Yu X, Zhao X, Luo N, Pei Z, Liu H, Garvin DF.

Front Plant Sci. 2017 May 17;8:811. doi: 10.3389/fpls.2017.00811. eCollection 2017.

5.

De Novo Transcriptome Assembly in Polyploid Species.

Gutierrez-Gonzalez JJ, Garvin DF.

Methods Mol Biol. 2017;1536:209-221. doi: 10.1007/978-1-4939-6682-0_15.

PMID:
28132153
6.

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.

Woods DP, Bednarek R, Bouché F, Gordon SP, Vogel JP, Garvin DF, Amasino RM.

Plant Physiol. 2017 Jan;173(1):269-279. doi: 10.1104/pp.16.01178. Epub 2016 Oct 14.

7.

Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon.

Des Marais DL, Razzaque S, Hernandez KM, Garvin DF, Juenger TE.

Plant Sci. 2016 Oct;251:2-11. doi: 10.1016/j.plantsci.2016.03.010. Epub 2016 Mar 24.

PMID:
27593458
8.

Cell Wall Composition and Biomass Recalcitrance Differences Within a Genotypically Diverse Set of Brachypodium distachyon Inbred Lines.

Cass CL, Lavell AA, Santoro N, Foster CE, Karlen SD, Smith RA, Ralph J, Garvin DF, Sedbrook JC.

Front Plant Sci. 2016 May 26;7:708. doi: 10.3389/fpls.2016.00708. eCollection 2016.

9.

Subgenome-specific assembly of vitamin E biosynthesis genes and expression patterns during seed development provide insight into the evolution of oat genome.

Gutierrez-Gonzalez JJ, Garvin DF.

Plant Biotechnol J. 2016 Nov;14(11):2147-2157. doi: 10.1111/pbi.12571. Epub 2016 May 26.

10.

A spontaneous segmental deletion from chromosome arm 3DL enhances Fusarium head blight resistance in wheat.

Garvin DF, Porter H, Blankenheim ZJ, Chao S, Dill-Macky R.

Genome. 2015 Nov;58(11):479-88. doi: 10.1139/gen-2015-0088. Epub 2015 Oct 15.

PMID:
26524120
11.

Brachypodium distachyon-Cochliobolus sativus Pathosystem is a New Model for Studying Plant-Fungal Interactions in Cereal Crops.

Zhong S, Ali S, Leng Y, Wang R, Garvin DF.

Phytopathology. 2015 Apr;105(4):482-9. doi: 10.1094/PHYTO-08-14-0214-R.

12.

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

Catalan P, Chalhoub B, Chochois V, Garvin DF, Hasterok R, Manzaneda AJ, Mur LA, Pecchioni N, Rasmussen SK, Vogel JP, Voxeur A.

Trends Plant Sci. 2014 Jul;19(7):414-8. doi: 10.1016/j.tplants.2014.05.002. Epub 2014 Jun 7.

PMID:
24917149
13.

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC, Vogel JP.

Plant J. 2014 Aug;79(3):361-74. doi: 10.1111/tpj.12569. Epub 2014 Jul 15.

14.

Molecular and comparative mapping of genes governing spike compactness from wild emmer wheat.

Faris JD, Zhang Z, Garvin DF, Xu SS.

Mol Genet Genomics. 2014 Aug;289(4):641-51. doi: 10.1007/s00438-014-0836-2. Epub 2014 Mar 21.

PMID:
24652470
15.

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.

Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ.

Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145.

16.

Streptococcus pasteurianus septicemia.

Alex D, Garvin DF, Peters SM.

Indian J Med Microbiol. 2013 Jul-Sep;31(3):310-2. doi: 10.4103/0255-0857.115668.

17.

Analysis and annotation of the hexaploid oat seed transcriptome.

Gutierrez-Gonzalez JJ, Tu ZJ, Garvin DF.

BMC Genomics. 2013 Jul 11;14:471. doi: 10.1186/1471-2164-14-471.

18.

Infection of Brachypodium distachyon by formae speciales of Puccinia graminis: early infection events and host-pathogen incompatibility.

Figueroa M, Alderman S, Garvin DF, Pfender WF.

PLoS One. 2013;8(2):e56857. doi: 10.1371/journal.pone.0056857. Epub 2013 Feb 18.

19.

Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon.

Cui Y, Lee MY, Huo N, Bragg J, Yan L, Yuan C, Li C, Holditch SJ, Xie J, Luo MC, Li D, Yu J, Martin J, Schackwitz W, Gu YQ, Vogel JP, Jackson AO, Liu Z, Garvin DF.

PLoS One. 2012;7(6):e38333. doi: 10.1371/journal.pone.0038333. Epub 2012 Jun 4.

20.

QTLs for resistance to the false brome rust Puccinia brachypodii in the model grass Brachypodium distachyon L.

Barbieri M, Marcel TC, Niks RE, Francia E, Pasquariello M, Mazzamurro V, Garvin DF, Pecchioni N.

Genome. 2012 Feb;55(2):152-63. doi: 10.1139/G2012-001. Epub 2012 Feb 9.

PMID:
22321152
21.

Grain dormancy and light quality effects on germination in the model grass Brachypodium distachyon.

Barrero JM, Jacobsen JV, Talbot MJ, White RG, Swain SM, Garvin DF, Gubler F.

New Phytol. 2012 Jan;193(2):376-86. doi: 10.1111/j.1469-8137.2011.03938.x. Epub 2011 Oct 31.

22.

Brachypodium as a model for the grasses: today and the future.

Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, Caicedo AL, Gao C, Gu Y, Hazen SP, Holt BF 3rd, Hong SY, Jordan M, Manzaneda AJ, Mitchell-Olds T, Mochida K, Mur LA, Park CM, Sedbrook J, Watt M, Zheng SJ, Vogel JP.

Plant Physiol. 2011 Sep;157(1):3-13. doi: 10.1104/pp.111.179531. Epub 2011 Jul 19. No abstract available.

23.

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon.

Huo N, Garvin DF, You FM, McMahon S, Luo MC, Gu YQ, Lazo GR, Vogel JP.

Theor Appl Genet. 2011 Aug;123(3):455-64. doi: 10.1007/s00122-011-1598-4. Epub 2011 May 20.

PMID:
21597976
24.

Brachypodium distachyon genomics for sustainable food and fuel production.

Bevan MW, Garvin DF, Vogel JP.

Curr Opin Biotechnol. 2010 Apr;21(2):211-7. doi: 10.1016/j.copbio.2010.03.006. Epub 2010 Mar 31.

PMID:
20362425
25.

An SSR-based genetic linkage map of the model grass Brachypodium distachyon.

Garvin DF, McKenzie N, Vogel JP, Mockler TC, Blankenheim ZJ, Wright J, Cheema JJ, Dicks J, Huo N, Hayden DM, Gu Y, Tobias C, Chang JH, Chu A, Trick M, Michael TP, Bevan MW, Snape JW.

Genome. 2010 Jan;53(1):1-13. doi: 10.1139/g09-079.

PMID:
20130744
26.

Quantitative trait locus mapping of increased Fusarium head blight susceptibility associated with a wild emmer wheat chromosome.

Garvin DF, Stack RW, Hansen JM.

Phytopathology. 2009 Apr;99(4):447-52. doi: 10.1094/PHYTO-99-4-0447.

27.

Wheat leaf rust caused by Puccinia triticina.

Bolton MD, Kolmer JA, Garvin DF.

Mol Plant Pathol. 2008 Sep;9(5):563-75. doi: 10.1111/j.1364-3703.2008.00487.x. Review.

28.

Lr34-mediated leaf rust resistance in wheat: transcript profiling reveals a high energetic demand supported by transient recruitment of multiple metabolic pathways.

Bolton MD, Kolmer JA, Xu WW, Garvin DF.

Mol Plant Microbe Interact. 2008 Dec;21(12):1515-27. doi: 10.1094/MPMI-21-12-1515.

29.

Physiological and molecular characterization of aluminum resistance in Medicago truncatula.

Chandran D, Sharopova N, VandenBosch KA, Garvin DF, Samac DA.

BMC Plant Biol. 2008 Aug 19;8:89. doi: 10.1186/1471-2229-8-89.

30.

Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines.

Bilgic H, Cho S, Garvin DF, Muehlbauer GJ.

Genome. 2007 Oct;50(10):898-906.

PMID:
18059553
31.

Determination of selenium bioavailability from wheat mill fractions in rats by using the slope-ratio assay and a modified torula yeast-based diet.

Reeves PG, Gregoire BR, Garvin DF, Hareland GA, Lindlauf JE, Johnson LK, Finley JW.

J Agric Food Chem. 2007 Jan 24;55(2):516-22.

PMID:
17227087
32.

The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high levels of beta-carotene accumulation.

Lu S, Van Eck J, Zhou X, Lopez AB, O'Halloran DM, Cosman KM, Conlin BJ, Paolillo DJ, Garvin DF, Vrebalov J, Kochian LV, Küpper H, Earle ED, Cao J, Li L.

Plant Cell. 2006 Dec;18(12):3594-605. Epub 2006 Dec 15.

33.

Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics.

Huo N, Gu YQ, Lazo GR, Vogel JP, Coleman-Derr D, Luo MC, Thilmony R, Garvin DF, Anderson OD.

Genome. 2006 Sep;49(9):1099-108.

PMID:
17110990
34.

beta-Carotene accumulation induced by the cauliflower Or gene is not due to an increased capacity of biosynthesis.

Li L, Lu S, Cosman KM, Earle ED, Garvin DF, O'Neill J.

Phytochemistry. 2006 Jun;67(12):1177-84.

PMID:
16790254
35.

Molecular characterization and mapping of ALMT1, the aluminium-tolerance gene of bread wheat (Triticum aestivum L.).

Raman H, Zhang K, Cakir M, Appels R, Garvin DF, Maron LG, Kochian LV, Moroni JS, Raman R, Imtiaz M, Drake-Brockman F, Waters I, Martin P, Sasaki T, Yamamoto Y, Matsumoto H, Hebb DM, Delhaize E, Ryan PR.

Genome. 2005 Oct;48(5):781-91.

PMID:
16391684
36.

Transcriptome analysis and physical mapping of barley genes in wheat-barley chromosome addition lines.

Cho S, Garvin DF, Muehlbauer GJ.

Genetics. 2006 Feb;172(2):1277-85. Epub 2005 Dec 1.

37.

Hypoxemic respiratory failure in a 57-year-old woman with acute monocytic leukemia.

Valentino DJ 3rd, Gelfand MC, Nava VE, Garvin DF, Roberts AH 2nd.

Chest. 2005 Nov;128(5):3629-33. No abstract available. Erratum in: Chest. 2006 Jan;129(1):216.

PMID:
16304323
38.

A model wheat cultivar for transformation to improve resistance to Fusarium Head Blight.

Mackintosh CA, Garvin DF, Radmer LE, Heinen SJ, Muehlbauer GJ.

Plant Cell Rep. 2006 Apr;25(4):313-9. Epub 2005 Oct 27.

PMID:
16252090
39.

The chromoplasts of Or mutants of cauliflower (Brassica oleracea L. var. botrytis).

Paolillo DJ Jr, Garvin DF, Parthasarathy MV.

Protoplasma. 2004 Dec;224(3-4):245-53. Epub 2004 Dec 22.

PMID:
15614485
40.

Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the poaceae.

Magalhaes JV, Garvin DF, Wang Y, Sorrells ME, Klein PE, Schaffert RE, Li L, Kochian LV.

Genetics. 2004 Aug;167(4):1905-14.

41.

Kinetic properties of a micronutrient transporter from Pisum sativum indicate a primary function in Fe uptake from the soil.

Cohen CK, Garvin DF, Kochian LV.

Planta. 2004 Mar;218(5):784-92. Epub 2003 Nov 26.

PMID:
14648120
42.

High-resolution genetic and physical mapping of the cauliflower high-beta-carotene gene Or ( Orange).

Li L, Lu S, O'Halloran DM, Garvin DF, Vrebalov J.

Mol Genet Genomics. 2003 Nov;270(2):132-8. Epub 2003 Aug 8.

PMID:
12908106
45.

Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition.

Wang YH, Garvin DF, Kochian LV.

Plant Physiol. 2001 Sep;127(1):345-59. Erratum in: Plant Physiol 2001 Nov;127(3):1323.

46.
47.

Physiological basis of reduced AL tolerance in ditelosomic lines of Chinese Spring wheat.

Papernik LA, Bethea AS, Singleton TE, Magalhaes JV, Garvin DF, Kochian LV.

Planta. 2001 Apr;212(5-6):829-34.

PMID:
11346958
48.

Molecular physiology of zinc transport in the Zn hyperaccumulator Thlaspi caerulescens.

Lasat MM, Pence NS, Garvin DF, Ebbs SD, Kochian LV.

J Exp Bot. 2000 Jan;51(342):71-9.

PMID:
10938797
49.

The molecular physiology of heavy metal transport in the Zn/Cd hyperaccumulator Thlaspi caerulescens.

Pence NS, Larsen PB, Ebbs SD, Letham DL, Lasat MM, Garvin DF, Eide D, Kochian LV.

Proc Natl Acad Sci U S A. 2000 Apr 25;97(9):4956-60.

50.

Agricultural approaches to improving phytonutrient content in plants: an overview.

Kochian LV, Garvin DF.

Nutr Rev. 1999 Sep;57(9 Pt 2):S13-8. Review.

PMID:
10568346

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