Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 48

1.

MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices.

McGinnis CS, Patterson DM, Winkler J, Conrad DN, Hein MY, Srivastava V, Hu JL, Murrow LM, Weissman JS, Werb Z, Chow ED, Gartner ZJ.

Nat Methods. 2019 Jul;16(7):619-626. doi: 10.1038/s41592-019-0433-8. Epub 2019 Jun 17.

PMID:
31209384
2.

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors.

McGinnis CS, Murrow LM, Gartner ZJ.

Cell Syst. 2019 Apr 24;8(4):329-337.e4. doi: 10.1016/j.cels.2019.03.003. Epub 2019 Apr 3.

PMID:
30954475
3.

Paracrine costimulation of IFN-γ signaling by integrins modulates CD8 T cell differentiation.

Krummel MF, Mahale JN, Uhl LFK, Hardison EA, Mujal AM, Mazet JM, Weber RJ, Gartner ZJ, Gérard A.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11585-11590. doi: 10.1073/pnas.1804556115. Epub 2018 Oct 22.

4.

Cell-Specific Chemical Delivery Using a Selective Nitroreductase-Nitroaryl Pair.

Gruber TD, Krishnamurthy C, Grimm JB, Tadross MR, Wysocki LM, Gartner ZJ, Lavis LD.

ACS Chem Biol. 2018 Oct 19;13(10):2888-2896. doi: 10.1021/acschembio.8b00524. Epub 2018 Aug 29.

5.

Quanti.us: a tool for rapid, flexible, crowd-based annotation of images.

Hughes AJ, Mornin JD, Biswas SK, Beck LE, Bauer DP, Raj A, Bianco S, Gartner ZJ.

Nat Methods. 2018 Aug;15(8):587-590. doi: 10.1038/s41592-018-0069-0. Epub 2018 Jul 31.

PMID:
30065368
6.

An Oil-Free Picodrop Bioassay Platform for Synthetic Biology.

Siltanen CA, Cole RH, Poust S, Chao L, Tyerman J, Kaufmann-Malaga B, Ubersax J, Gartner ZJ, Abate AR.

Sci Rep. 2018 May 21;8(1):7913. doi: 10.1038/s41598-018-25577-4.

7.

Characterizing cellular mechanical phenotypes with mechano-node-pore sensing.

Kim J, Han S, Lei A, Miyano M, Bloom J, Srivastava V, Stampfer MM, Gartner ZJ, LaBarge MA, Sohn LL.

Microsyst Nanoeng. 2018;4. pii: 17091. doi: 10.1038/micronano.2017.91. Epub 2018 Mar 12.

8.

Phosphorylated EGFR Dimers Are Not Sufficient to Activate Ras.

Liang SI, van Lengerich B, Eichel K, Cha M, Patterson DM, Yoon TY, von Zastrow M, Jura N, Gartner ZJ.

Cell Rep. 2018 Mar 6;22(10):2593-2600. doi: 10.1016/j.celrep.2018.02.031.

9.

Engineered Tissue Folding by Mechanical Compaction of the Mesenchyme.

Hughes AJ, Miyazaki H, Coyle MC, Zhang J, Laurie MT, Chu D, Vavrušová Z, Schneider RA, Klein OD, Gartner ZJ.

Dev Cell. 2018 Jan 22;44(2):165-178.e6. doi: 10.1016/j.devcel.2017.12.004. Epub 2017 Dec 28.

10.

Opportunities for organoids as new models of aging.

Hu JL, Todhunter ME, LaBarge MA, Gartner ZJ.

J Cell Biol. 2018 Jan 2;217(1):39-50. doi: 10.1083/jcb.201709054. Epub 2017 Dec 20. Review.

11.

Single-cell mechanogenetics using monovalent magnetoplasmonic nanoparticles.

Kim JW, Seo D, Lee JU, Southard KM, Lim Y, Kim D, Gartner ZJ, Jun YW, Cheon J.

Nat Protoc. 2017 Sep;12(9):1871-1889. doi: 10.1038/nprot.2017.071. Epub 2017 Aug 17.

12.

Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells.

Cole RH, Tang SY, Siltanen CA, Shahi P, Zhang JQ, Poust S, Gartner ZJ, Abate AR.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):8728-8733. doi: 10.1073/pnas.1704020114. Epub 2017 Jul 31.

13.

A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time.

Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW.

Cell. 2017 Jun 15;169(7):1357. doi: 10.1016/j.cell.2017.06.005. No abstract available.

14.

Unraveling cell-to-cell signaling networks with chemical biology.

Gartner ZJ, Prescher JA, Lavis LD.

Nat Chem Biol. 2017 May 17;13(6):564-568. doi: 10.1038/nchembio.2391. No abstract available.

PMID:
28514428
15.

A DNA-Based T Cell Receptor Reveals a Role for Receptor Clustering in Ligand Discrimination.

Taylor MJ, Husain K, Gartner ZJ, Mayor S, Vale RD.

Cell. 2017 Mar 23;169(1):108-119.e20. doi: 10.1016/j.cell.2017.03.006.

16.

Non-autonomous cell proliferation in the mammary gland and cancer.

Weber RJ, Desai TA, Gartner ZJ.

Curr Opin Cell Biol. 2017 Apr;45:55-61. doi: 10.1016/j.ceb.2017.02.009. Epub 2017 Mar 15. Review.

PMID:
28314237
17.

Dissecting the stem cell niche with organoid models: an engineering-based approach.

Murrow LM, Weber RJ, Gartner ZJ.

Development. 2017 Mar 15;144(6):998-1007. doi: 10.1242/dev.140905. Review.

18.

Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding.

Shahi P, Kim SC, Haliburton JR, Gartner ZJ, Abate AR.

Sci Rep. 2017 Mar 14;7:44447. doi: 10.1038/srep44447.

19.

Effects of cell type and configuration on anabolic and catabolic activity in 3D co-culture of mesenchymal stem cells and nucleus pulposus cells.

Ouyang A, Cerchiari AE, Tang X, Liebenberg E, Alliston T, Gartner ZJ, Lotz JC.

J Orthop Res. 2017 Jan;35(1):61-73. doi: 10.1002/jor.23452. Epub 2016 Oct 20.

20.

Fabrication of 3-D Reconstituted Organoid Arrays by DNA-Programmed Assembly of Cells (DPAC).

Todhunter ME, Weber RJ, Farlow J, Jee NY, Cerchiari AE, Gartner ZJ.

Curr Protoc Chem Biol. 2016 Sep 13;8(3):147-78. doi: 10.1002/cpch.8.

21.

Probing the luminal microenvironment of reconstituted epithelial microtissues.

Cerchiari AE, Samy KE, Todhunter ME, Schlesinger E, Henise J, Rieken C, Gartner ZJ, Desai TA.

Sci Rep. 2016 Sep 13;6:33148. doi: 10.1038/srep33148.

22.

Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers.

Cole RH, Gartner ZJ, Abate AR.

J Vis Exp. 2016 May 5;(111). doi: 10.3791/54010.

23.

A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time.

Seo D, Southard KM, Kim JW, Lee HJ, Farlow J, Lee JU, Litt DB, Haas T, Alivisatos AP, Cheon J, Gartner ZJ, Jun YW.

Cell. 2016 Jun 2;165(6):1507-1518. doi: 10.1016/j.cell.2016.04.045. Epub 2016 May 12. Erratum in: Cell. 2017 Jun 15;169(7):1357.

24.

Interrogating cellular fate decisions with high-throughput arrays of multiplexed cellular communities.

Chen S, Bremer AW, Scheideler OJ, Na YS, Todhunter ME, Hsiao S, Bomdica PR, Maharbiz MM, Gartner ZJ, Schaffer DV.

Nat Commun. 2016 Jan 12;7:10309. doi: 10.1038/ncomms10309.

25.

Coupling between apical tension and basal adhesion allow epithelia to collectively sense and respond to substrate topography over long distances.

Broaders KE, Cerchiari AE, Gartner ZJ.

Integr Biol (Camb). 2015 Dec;7(12):1611-21. doi: 10.1039/c5ib00240k. Epub 2015 Oct 28.

26.

Programmed synthesis of three-dimensional tissues.

Todhunter ME, Jee NY, Hughes AJ, Coyle MC, Cerchiari A, Farlow J, Garbe JC, LaBarge MA, Desai TA, Gartner ZJ.

Nat Methods. 2015 Oct;12(10):975-81. doi: 10.1038/nmeth.3553. Epub 2015 Aug 31.

27.

Compact and modular multicolour fluorescence detector for droplet microfluidics.

Cole RH, de Lange N, Gartner ZJ, Abate AR.

Lab Chip. 2015 Jul 7;15(13):2754-8. doi: 10.1039/c5lc00333d. Epub 2015 Jun 2.

28.

A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity.

Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):2287-92. doi: 10.1073/pnas.1410776112. Epub 2015 Jan 29.

29.

Production and targeting of monovalent quantum dots.

Seo D, Farlow J, Southard K, Jun YW, Gartner ZJ.

J Vis Exp. 2014 Oct 23;(92):e52198. doi: 10.3791/52198.

30.

Formation of spatially and geometrically controlled three-dimensional tissues in soft gels by sacrificial micromolding.

Cerchiari A, Garbe JC, Todhunter ME, Jee NY, Pinney JR, LaBarge MA, Desai TA, Gartner ZJ.

Tissue Eng Part C Methods. 2015 Jun;21(6):541-7. doi: 10.1089/ten.TEC.2014.0450. Epub 2014 Dec 11.

31.

Efficient targeting of fatty-acid modified oligonucleotides to live cell membranes through stepwise assembly.

Weber RJ, Liang SI, Selden NS, Desai TA, Gartner ZJ.

Biomacromolecules. 2014 Dec 8;15(12):4621-6. doi: 10.1021/bm501467h. Epub 2014 Nov 20.

32.

A modular approach for assembling aldehyde-tagged proteins on DNA scaffolds.

Liang SI, McFarland JM, Rabuka D, Gartner ZJ.

J Am Chem Soc. 2014 Aug 6;136(31):10850-3. doi: 10.1021/ja504711n. Epub 2014 Jul 25.

33.

Formation of targeted monovalent quantum dots by steric exclusion.

Farlow J, Seo D, Broaders KE, Taylor MJ, Gartner ZJ, Jun YW.

Nat Methods. 2013 Dec;10(12):1203-5. doi: 10.1038/nmeth.2682. Epub 2013 Oct 13.

34.

Mycobacterium tuberculosis Rv3406 is a type II alkyl sulfatase capable of sulfate scavenging.

Sogi KM, Gartner ZJ, Breidenbach MA, Appel MJ, Schelle MW, Bertozzi CR.

PLoS One. 2013 Jun 6;8(6):e65080. doi: 10.1371/journal.pone.0065080. Print 2013.

35.

Directing the assembly of spatially organized multicomponent tissues from the bottom up.

Liu JS, Gartner ZJ.

Trends Cell Biol. 2012 Dec;22(12):683-91. doi: 10.1016/j.tcb.2012.09.004. Epub 2012 Oct 12. Review.

36.

Programmed cell-to-cell variability in Ras activity triggers emergent behaviors during mammary epithelial morphogenesis.

Liu JS, Farlow JT, Paulson AK, Labarge MA, Gartner ZJ.

Cell Rep. 2012 Nov 29;2(5):1461-70. doi: 10.1016/j.celrep.2012.08.037. Epub 2012 Oct 4.

37.

Cellular microfabrication: observing intercellular interactions using lithographically-defined DNA capture sequences.

Onoe H, Hsiao SC, Douglas ES, Gartner ZJ, Bertozzi CR, Francis MB, Mathies RA.

Langmuir. 2012 May 29;28(21):8120-6. doi: 10.1021/la204863s. Epub 2012 May 16.

PMID:
22512362
38.

Chemically programmed cell adhesion with membrane-anchored oligonucleotides.

Selden NS, Todhunter ME, Jee NY, Liu JS, Broaders KE, Gartner ZJ.

J Am Chem Soc. 2012 Jan 18;134(2):765-8. doi: 10.1021/ja2080949. Epub 2011 Dec 28.

39.

Direct cell surface modification with DNA for the capture of primary cells and the investigation of myotube formation on defined patterns.

Hsiao SC, Shum BJ, Onoe H, Douglas ES, Gartner ZJ, Mathies RA, Bertozzi CR, Francis MB.

Langmuir. 2009 Jun 16;25(12):6985-91. doi: 10.1021/la900150n.

40.

Programmed assembly of 3-dimensional microtissues with defined cellular connectivity.

Gartner ZJ, Bertozzi CR.

Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4606-10. doi: 10.1073/pnas.0900717106. Epub 2009 Mar 9.

41.

DNA-templated organic synthesis and selection of a library of macrocycles.

Gartner ZJ, Tse BN, Grubina R, Doyon JB, Snyder TM, Liu DR.

Science. 2004 Sep 10;305(5690):1601-5. Epub 2004 Aug 19.

42.

Directed evolution of ligand dependence: small-molecule-activated protein splicing.

Buskirk AR, Ong YC, Gartner ZJ, Liu DR.

Proc Natl Acad Sci U S A. 2004 Jul 20;101(29):10505-10. Epub 2004 Jul 9.

43.

Translation of DNA into synthetic N-acyloxazolidines.

Li X, Gartner ZJ, Tse BN, Liu DR.

J Am Chem Soc. 2004 Apr 28;126(16):5090-2.

PMID:
15099091
44.

Two enabling architectures for DNA-templated organic synthesis.

Gartner ZJ, Grubina R, Calderone CT, Liu DR.

Angew Chem Int Ed Engl. 2003 Mar 28;42(12):1370-5. No abstract available.

PMID:
12671971
45.

Directing otherwise incompatible reactions in a single solution by using DNA-templated organic synthesis.

Calderone CT, Puckett JW, Gartner ZJ, Liu DR.

Angew Chem Int Ed Engl. 2002 Nov 4;41(21):4104-8. No abstract available.

PMID:
12412096
46.

Multistep small-molecule synthesis programmed by DNA templates.

Gartner ZJ, Kanan MW, Liu DR.

J Am Chem Soc. 2002 Sep 4;124(35):10304-6.

PMID:
12197733
47.

Expanding the reaction scope of DNA-templated synthesis.

Gartner ZJ, Kanan MW, Liu DR.

Angew Chem Int Ed Engl. 2002 May 17;41(10):1796-800. No abstract available.

PMID:
19750721
48.

The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules.

Gartner ZJ, Liu DR.

J Am Chem Soc. 2001 Jul 18;123(28):6961-3. No abstract available.

Supplemental Content

Loading ...
Support Center