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Items: 21

1.

Deep scanning lysine metabolism in Escherichia coli.

Bassalo MC, Garst AD, Choudhury A, Grau WC, Oh EJ, Spindler E, Lipscomb T, Gill RT.

Mol Syst Biol. 2018 Nov 26;14(11):e8371. doi: 10.15252/msb.20188371.

2.

Genomic Deoxyxylulose Phosphate Reductoisomerase (DXR) Mutations Conferring Resistance to the Antimalarial Drug Fosmidomycin in E. coli.

Pines G, Oh EJ, Bassalo MC, Choudhury A, Garst AD, Fankhauser RG, Eckert CA, Gill RT.

ACS Synth Biol. 2018 Nov 21. doi: 10.1021/acssynbio.8b00219. [Epub ahead of print]

PMID:
30462485
3.

Multiplex navigation of global regulatory networks (MINR) in yeast for improved ethanol tolerance and production.

Liu R, Liang L, Choudhury A, Garst AD, Eckert CA, Oh EJ, Winkler J, Gill RT.

Metab Eng. 2018 Jul 17;51:50-58. doi: 10.1016/j.ymben.2018.07.007. [Epub ahead of print]

PMID:
30030154
4.

Iterative genome editing of Escherichia coli for 3-hydroxypropionic acid production.

Liu R, Liang L, Choudhury A, Bassalo MC, Garst AD, Tarasava K, Gill RT.

Metab Eng. 2018 May;47:303-313. doi: 10.1016/j.ymben.2018.04.007. Epub 2018 Apr 14.

PMID:
29665411
5.

Directed combinatorial mutagenesis of Escherichia coli for complex phenotype engineering.

Liu R, Liang L, Garst AD, Choudhury A, Nogué VSI, Beckham GT, Gill RT.

Metab Eng. 2018 May;47:10-20. doi: 10.1016/j.ymben.2018.02.007. Epub 2018 Mar 29.

PMID:
29477855
6.

CRISPR EnAbled Trackable genome Engineering for isopropanol production in Escherichia coli.

Liang L, Liu R, Garst AD, Lee T, Nogué VSI, Beckham GT, Gill RT.

Metab Eng. 2017 May;41:1-10. doi: 10.1016/j.ymben.2017.02.009. Epub 2017 Feb 16.

PMID:
28216108
7.

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering.

Garst AD, Bassalo MC, Pines G, Lynch SA, Halweg-Edwards AL, Liu R, Liang L, Wang Z, Zeitoun R, Alexander WG, Gill RT.

Nat Biotechnol. 2017 Jan;35(1):48-55. doi: 10.1038/nbt.3718. Epub 2016 Dec 12.

PMID:
27941803
8.

Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli.

Bassalo MC, Garst AD, Halweg-Edwards AL, Grau WC, Domaille DW, Mutalik VK, Arkin AP, Gill RT.

ACS Synth Biol. 2016 Jul 15;5(7):561-8. doi: 10.1021/acssynbio.5b00187. Epub 2016 Apr 22.

PMID:
27072506
9.

Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits.

Freed EF, Winkler JD, Weiss SJ, Garst AD, Mutalik VK, Arkin AP, Knight R, Gill RT.

ACS Synth Biol. 2015 Nov 20;4(11):1244-53. doi: 10.1021/acssynbio.5b00133. Epub 2015 Nov 5.

PMID:
26478262
10.

The emergence of commodity-scale genetic manipulation.

Halweg-Edwards AL, Grau WC, Winkler JD, Garst AD, Gill RT.

Curr Opin Chem Biol. 2015 Oct;28:150-5. doi: 10.1016/j.cbpa.2015.07.009. Epub 2015 Aug 22. Review.

PMID:
26302383
11.

Multiplexed tracking of combinatorial genomic mutations in engineered cell populations.

Zeitoun RI, Garst AD, Degen GD, Pines G, Mansell TJ, Glebes TY, Boyle NR, Gill RT.

Nat Biotechnol. 2015 Jun;33(6):631-7. doi: 10.1038/nbt.3177. Epub 2015 Mar 23.

PMID:
25798935
12.

Codon compression algorithms for saturation mutagenesis.

Pines G, Pines A, Garst AD, Zeitoun RI, Lynch SA, Gill RT.

ACS Synth Biol. 2015 May 15;4(5):604-14. doi: 10.1021/sb500282v. Epub 2014 Oct 30.

PMID:
25303315
13.

Modularity of select riboswitch expression platforms enables facile engineering of novel genetic regulatory devices.

Ceres P, Garst AD, Marcano-Velázquez JG, Batey RT.

ACS Synth Biol. 2013 Aug 16;2(8):463-72. doi: 10.1021/sb4000096. Epub 2013 Mar 28.

14.

Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain.

Fiegland LR, Garst AD, Batey RT, Nesbitt DJ.

Biochemistry. 2012 Nov 13;51(45):9223-33. doi: 10.1021/bi3007753. Epub 2012 Oct 30.

15.

Insights into the regulatory landscape of the lysine riboswitch.

Garst AD, Porter EB, Batey RT.

J Mol Biol. 2012 Oct 12;423(1):17-33. doi: 10.1016/j.jmb.2012.06.038. Epub 2012 Jul 3.

16.

Riboswitches: structures and mechanisms.

Garst AD, Edwards AL, Batey RT.

Cold Spring Harb Perspect Biol. 2011 Jun 1;3(6). pii: a003533. doi: 10.1101/cshperspect.a003533. Review.

17.

Discrimination between closely related cellular metabolites by the SAM-I riboswitch.

Montange RK, Mondragón E, van Tyne D, Garst AD, Ceres P, Batey RT.

J Mol Biol. 2010 Feb 26;396(3):761-72. doi: 10.1016/j.jmb.2009.12.007. Epub 2009 Dec 16.

18.

A switch in time: detailing the life of a riboswitch.

Garst AD, Batey RT.

Biochim Biophys Acta. 2009 Sep-Oct;1789(9-10):584-91. doi: 10.1016/j.bbagrm.2009.06.004. Epub 2009 Jul 9. Review.

19.

Determining structures of RNA aptamers and riboswitches by X-ray crystallography.

Edwards AL, Garst AD, Batey RT.

Methods Mol Biol. 2009;535:135-63. doi: 10.1007/978-1-59745-557-2_9.

20.

Strategies in RNA crystallography.

Reyes FE, Garst AD, Batey RT.

Methods Enzymol. 2009;469:119-39. doi: 10.1016/S0076-6879(09)69006-6. Epub 2009 Nov 17.

PMID:
20946787
21.

Crystal structure of the lysine riboswitch regulatory mRNA element.

Garst AD, Héroux A, Rambo RP, Batey RT.

J Biol Chem. 2008 Aug 15;283(33):22347-51. doi: 10.1074/jbc.C800120200. Epub 2008 Jul 1.

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