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Items: 22

1.

A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C, Costet L, Yahiaoui N, Healey A, Sims D, Cherukuri Y, Sreedasyam A, Kilian A, Chan A, Van Sluys MA, Swaminathan K, Town C, Bergès H, Simmons B, Glaszmann JC, van der Vossen E, Henry R, Schmutz J, D'Hont A.

Nat Commun. 2018 Jul 6;9(1):2638. doi: 10.1038/s41467-018-05051-5.

2.

The coffee genome hub: a resource for coffee genomes.

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1028-35. doi: 10.1093/nar/gku1108. Epub 2014 Nov 11.

3.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

4.

Prospecting sugarcane resistance to Sugarcane yellow leaf virus by genome-wide association.

Debibakas S, Rocher S, Garsmeur O, Toubi L, Roques D, D'Hont A, Hoarau JY, Daugrois JH.

Theor Appl Genet. 2014 Aug;127(8):1719-32. doi: 10.1007/s00122-014-2334-7. Epub 2014 Jun 12.

5.

Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications.

Jourda C, Cardi C, Mbéguié-A-Mbéguié D, Bocs S, Garsmeur O, D'Hont A, Yahiaoui N.

New Phytol. 2014 May;202(3):986-1000. doi: 10.1111/nph.12710. Epub 2014 Feb 7.

6.

DNA methylation and expression of the EgDEF1 gene and neighboring retrotransposons in mantled somaclonal variants of oil palm.

Jaligot E, Hooi WY, Debladis E, Richaud F, Beulé T, Collin M, Agbessi MD, Sabot F, Garsmeur O, D'Hont A, Alwee SS, Rival A.

PLoS One. 2014 Mar 17;9(3):e91896. doi: 10.1371/journal.pone.0091896. eCollection 2014.

7.

Two evolutionarily distinct classes of paleopolyploidy.

Garsmeur O, Schnable JC, Almeida A, Jourda C, D'Hont A, Freeling M.

Mol Biol Evol. 2014 Feb;31(2):448-54. doi: 10.1093/molbev/mst230. Epub 2013 Dec 1.

PMID:
24296661
8.

The banana genome hub.

Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF, Lengelle J, Baurens FC, Cenci A, Pitollat B, D'Hont A, Ruiz M, Rouard M, Bocs S.

Database (Oxford). 2013 May 23;2013:bat035. doi: 10.1093/database/bat035. Print 2013.

9.

A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check.

Blenda A, Fang DD, Rami JF, Garsmeur O, Luo F, Lacape JM.

PLoS One. 2012;7(9):e45739. doi: 10.1371/journal.pone.0045739. Epub 2012 Sep 24. Erratum in: PLoS One. 2013;8(3). doi:10.1371/annotation/ab8211a0-53a5-4765-a7cb-4b613ffb1b09.

10.

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P.

Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.

PMID:
22801500
11.

Haplotype structure around Bru1 reveals a narrow genetic basis for brown rust resistance in modern sugarcane cultivars.

Costet L, Le Cunff L, Royaert S, Raboin LM, Hervouet C, Toubi L, Telismart H, Garsmeur O, Rousselle Y, Pauquet J, Nibouche S, Glaszmann JC, Hoarau JY, D'Hont A.

Theor Appl Genet. 2012 Sep;125(5):825-36. doi: 10.1007/s00122-012-1875-x. Epub 2012 May 10.

PMID:
22572763
12.

Chado controller: advanced annotation management with a community annotation system.

Guignon V, Droc G, Alaux M, Baurens FC, Garsmeur O, Poiron C, Carver T, Rouard M, Bocs S.

Bioinformatics. 2012 Apr 1;28(7):1054-6. doi: 10.1093/bioinformatics/bts046. Epub 2012 Jan 28.

13.

Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A-B genome divergence.

Nielen S, Vidigal BS, Leal-Bertioli SC, Ratnaparkhe M, Paterson AH, Garsmeur O, D'Hont A, Guimarães PM, Bertioli DJ.

Mol Genet Genomics. 2012 Jan;287(1):21-38. doi: 10.1007/s00438-011-0656-6. Epub 2011 Nov 27.

PMID:
22120641
14.

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane.

Garsmeur O, Charron C, Bocs S, Jouffe V, Samain S, Couloux A, Droc G, Zini C, Glaszmann JC, Van Sluys MA, D'Hont A.

New Phytol. 2011 Jan;189(2):629-42. doi: 10.1111/j.1469-8137.2010.03497.x. Epub 2010 Oct 29.

15.

Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115).

Le Cunff L, Garsmeur O, Raboin LM, Pauquet J, Telismart H, Selvi A, Grivet L, Philippe R, Begum D, Deu M, Costet L, Wing R, Glaszmann JC, D'Hont A.

Genetics. 2008 Sep;180(1):649-60. doi: 10.1534/genetics.108.091355. Epub 2008 Aug 30.

16.

Insights into the Musa genome: syntenic relationships to rice and between Musa species.

Lescot M, Piffanelli P, Ciampi AY, Ruiz M, Blanc G, Leebens-Mack J, da Silva FR, Santos CM, D'Hont A, Garsmeur O, Vilarinhos AD, Kanamori H, Matsumoto T, Ronning CM, Cheung F, Haas BJ, Althoff R, Arbogast T, Hine E, Pappas GJ Jr, Sasaki T, Souza MT Jr, Miller RN, Glaszmann JC, Town CD.

BMC Genomics. 2008 Jan 30;9:58. doi: 10.1186/1471-2164-9-58.

17.

BAC libraries construction from the ancestral diploid genomes of the allotetraploid cultivated peanut.

Guimarães PM, Garsmeur O, Proite K, Leal-Bertioli SC, Seijo G, Chaine C, Bertioli DJ, D'Hont A.

BMC Plant Biol. 2008 Jan 29;8:14. doi: 10.1186/1471-2229-8-14.

18.

Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome.

Jannoo N, Grivet L, Chantret N, Garsmeur O, Glaszmann JC, Arruda P, D'Hont A.

Plant J. 2007 May;50(4):574-85. Epub 2007 Apr 8.

19.

Evidence for the dispersal of a unique lineage from Asia to America and Africa in the sugarcane fungal pathogen Ustilago scitaminea.

Raboin LM, Selvi A, Oliveira KM, Paulet F, Calatayud C, Zapater MF, Brottier P, Luzaran R, Garsmeur O, Carlier J, D'Hont A.

Fungal Genet Biol. 2007 Jan;44(1):64-76. Epub 2006 Sep 18.

PMID:
16979360
20.

Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane.

Rossi M, Araujo PG, Paulet F, Garsmeur O, Dias VM, Chen H, Van Sluys MA, D'Hont A.

Mol Genet Genomics. 2003 Jun;269(3):406-19. Epub 2003 May 6.

PMID:
12733061
21.

Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy.

Sallaud C, Lorieux M, Roumen E, Tharreau D, Berruyer R, Svestasrani P, Garsmeur O, Ghesquiere A, Notteghem JL.

Theor Appl Genet. 2003 Mar;106(5):794-803. Epub 2002 Oct 29. Erratum in: Theor Appl Genet. 2003 May;106(8):1287.

PMID:
12647052
22.

Comparative mapping of the wheat 5B short chromosome arm distal region with rice, relative to a crossability locus.

Lamoureux D, Boeuf C, Regad F, Garsmeur O, Charmet G, Sourdille P, Lagoda P, Bernard M.

Theor Appl Genet. 2002 Oct;105(5):759-765. Epub 2002 May 23.

PMID:
12582490

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