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Items: 17

1.

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations.

Thiergart T, Durán P, Ellis T, Vannier N, Garrido-Oter R, Kemen E, Roux F, Alonso-Blanco C, Ågren J, Schulze-Lefert P, Hacquard S.

Nat Ecol Evol. 2020 Jan;4(1):122-131. doi: 10.1038/s41559-019-1063-3. Epub 2019 Dec 23.

PMID:
31900452
2.

Lotus japonicus Symbiosis Genes Impact Microbial Interactions between Symbionts and Multikingdom Commensal Communities.

Thiergart T, Zgadzaj R, Bozsóki Z, Garrido-Oter R, Radutoiu S, Schulze-Lefert P.

mBio. 2019 Oct 8;10(5). pii: e01833-19. doi: 10.1128/mBio.01833-19.

3.

Site-specific cleavage of bacterial MucD by secreted proteases mediates antibacterial resistance in Arabidopsis.

Wang Y, Garrido-Oter R, Wu J, Winkelmüller TM, Agler M, Colby T, Nobori T, Kemen E, Tsuda K.

Nat Commun. 2019 Jun 28;10(1):2853. doi: 10.1038/s41467-019-10793-x.

4.

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice.

Zhang J, Liu YX, Zhang N, Hu B, Jin T, Xu H, Qin Y, Yan P, Zhang X, Guo X, Hui J, Cao S, Wang X, Wang C, Wang H, Qu B, Fan G, Yuan L, Garrido-Oter R, Chu C, Bai Y.

Nat Biotechnol. 2019 Jun;37(6):676-684. doi: 10.1038/s41587-019-0104-4. Epub 2019 Apr 29.

PMID:
31036930
5.

Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk.

Berens ML, Wolinska KW, Spaepen S, Ziegler J, Nobori T, Nair A, Krüler V, Winkelmüller TM, Wang Y, Mine A, Becker D, Garrido-Oter R, Schulze-Lefert P, Tsuda K.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2364-2373. doi: 10.1073/pnas.1817233116. Epub 2019 Jan 23.

6.

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival.

Durán P, Thiergart T, Garrido-Oter R, Agler M, Kemen E, Schulze-Lefert P, Hacquard S.

Cell. 2018 Nov 1;175(4):973-983.e14. doi: 10.1016/j.cell.2018.10.020.

7.

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia.

Garrido-Oter R, Nakano RT, Dombrowski N, Ma KW; AgBiome Team, McHardy AC, Schulze-Lefert P.

Cell Host Microbe. 2018 Jul 11;24(1):155-167.e5. doi: 10.1016/j.chom.2018.06.006.

8.

AMBER: Assessment of Metagenome BinnERs.

Meyer F, Hofmann P, Belmann P, Garrido-Oter R, Fritz A, Sczyrba A, McHardy AC.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy069.

9.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

10.

Interplay Between Innate Immunity and the Plant Microbiota.

Hacquard S, Spaepen S, Garrido-Oter R, Schulze-Lefert P.

Annu Rev Phytopathol. 2017 Aug 4;55:565-589. doi: 10.1146/annurev-phyto-080516-035623. Epub 2017 Jun 23. Review.

PMID:
28645232
11.

Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities.

Zgadzaj R, Garrido-Oter R, Jensen DB, Koprivova A, Schulze-Lefert P, Radutoiu S.

Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):E7996-E8005. Epub 2016 Nov 18.

12.

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.

Hacquard S, Kracher B, Hiruma K, Münch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristán S, van Themaat EV, Kemen E, McHardy AC, Schulze-Lefert P, O'Connell RJ.

Nat Commun. 2016 Sep 29;7:13072. doi: 10.1038/ncomms13072. No abstract available.

13.

Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time.

Dombrowski N, Schlaeppi K, Agler MT, Hacquard S, Kemen E, Garrido-Oter R, Wunder J, Coupland G, Schulze-Lefert P.

ISME J. 2017 Jan;11(1):43-55. doi: 10.1038/ismej.2016.109. Epub 2016 Aug 2.

14.

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.

Hacquard S, Kracher B, Hiruma K, Münch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristán S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O'Connell RJ.

Nat Commun. 2016 May 6;7:11362. doi: 10.1038/ncomms11362.

15.

Functional overlap of the Arabidopsis leaf and root microbiota.

Bai Y, Müller DB, Srinivas G, Garrido-Oter R, Potthoff E, Rott M, Dombrowski N, Münch PC, Spaepen S, Remus-Emsermann M, Hüttel B, McHardy AC, Vorholt JA, Schulze-Lefert P.

Nature. 2015 Dec 17;528(7582):364-9. doi: 10.1038/nature16192. Epub 2015 Dec 2.

PMID:
26633631
16.

Microbiota and Host Nutrition across Plant and Animal Kingdoms.

Hacquard S, Garrido-Oter R, González A, Spaepen S, Ackermann G, Lebeis S, McHardy AC, Dangl JL, Knight R, Ley R, Schulze-Lefert P.

Cell Host Microbe. 2015 May 13;17(5):603-16. doi: 10.1016/j.chom.2015.04.009. Review.

17.

Structure and function of the bacterial root microbiota in wild and domesticated barley.

Bulgarelli D, Garrido-Oter R, Münch PC, Weiman A, Dröge J, Pan Y, McHardy AC, Schulze-Lefert P.

Cell Host Microbe. 2015 Mar 11;17(3):392-403. doi: 10.1016/j.chom.2015.01.011. Epub 2015 Feb 26.

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