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Items: 1 to 50 of 61

1.

Imaging within single NPCs reveals NXF1's role in mRNA export on the cytoplasmic side of the pore.

Ben-Yishay R, Mor A, Shraga A, Ashkenazy-Titelman A, Kinor N, Schwed-Gross A, Jacob A, Kozer N, Kumar P, Garini Y, Shav-Tal Y.

J Cell Biol. 2019 Aug 2. pii: jcb.201901127. doi: 10.1083/jcb.201901127. [Epub ahead of print]

PMID:
31375530
2.

Sleep increases chromosome dynamics to enable reduction of accumulating DNA damage in single neurons.

Zada D, Bronshtein I, Lerer-Goldshtein T, Garini Y, Appelbaum L.

Nat Commun. 2019 Mar 5;10(1):895. doi: 10.1038/s41467-019-08806-w.

3.

Chromatin dynamics governed by a set of nuclear structural proteins.

Vivante A, Brozgol E, Bronshtein I, Levi V, Garini Y.

Genes Chromosomes Cancer. 2019 Jul;58(7):437-451. doi: 10.1002/gcc.22719. Epub 2019 Feb 17.

PMID:
30537111
4.

S-phase transcriptional buffering quantified on two different promoters.

Yunger S, Kafri P, Rosenfeld L, Greenberg E, Kinor N, Garini Y, Shav-Tal Y.

Life Sci Alliance. 2018 Sep 19;1(5):e201800086. doi: 10.26508/lsa.201800086. eCollection 2018 Oct.

5.

Measuring the Conformation and Persistence Length of Single-Stranded DNA Using a DNA Origami Structure.

Roth E, Glick Azaria A, Girshevitz O, Bitler A, Garini Y.

Nano Lett. 2018 Nov 14;18(11):6703-6709. doi: 10.1021/acs.nanolett.8b02093. Epub 2018 Oct 29.

PMID:
30352164
6.

Live Cell Imaging of Bioorthogonally Labelled Proteins Generated With a Single Pyrrolysine tRNA Gene.

Aloush N, Schvartz T, König AI, Cohen S, Brozgol E, Tam B, Nachmias D, Ben-David O, Garini Y, Elia N, Arbely E.

Sci Rep. 2018 Sep 28;8(1):14527. doi: 10.1038/s41598-018-32824-1.

7.

Distinct 3D Structural Patterns of Lamin A/C Expression in Hodgkin and Reed-Sternberg Cells.

Contu F, Rangel-Pozzo A, Trokajlo P, Wark L, Klewes L, Johnson NA, Petrogiannis-Haliotis T, Gartner JG, Garini Y, Vanni R, Knecht H, Mai S.

Cancers (Basel). 2018 Aug 24;10(9). pii: E286. doi: 10.3390/cancers10090286.

8.

The role of near-wall drag effects in the dynamics of tethered DNA under shear flow.

Nir G, Chetrit E, Vivante A, Garini Y, Berkovich R.

Soft Matter. 2018 Mar 28;14(12):2219-2226. doi: 10.1039/c7sm01328k. Epub 2018 Feb 16.

PMID:
29451293
9.

Automatic classification of cancer cells in multispectral microscopic images of lymph node samples.

Zimmerman-Moreno G, Marin I, Lindner M, Barshack I, Garini Y, Konen E, Mayer A.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:3973-3976. doi: 10.1109/EMBC.2016.7591597.

PMID:
28269155
10.

Genome organization in the nucleus: From dynamic measurements to a functional model.

Vivante A, Brozgol E, Bronshtein I, Garini Y.

Methods. 2017 Jul 1;123:128-137. doi: 10.1016/j.ymeth.2017.01.008. Epub 2017 Feb 1. Review.

11.

Rapid microscopy measurement of very large spectral images.

Lindner M, Shotan Z, Garini Y.

Opt Express. 2016 May 2;24(9):9511-27. doi: 10.1364/OE.24.009511.

PMID:
27137565
12.

Exploring chromatin organization mechanisms through its dynamic properties.

Bronshtein I, Kanter I, Kepten E, Lindner M, Berezin S, Shav-Tal Y, Garini Y.

Nucleus. 2016;7(1):27-33. doi: 10.1080/19491034.2016.1139272. Epub 2016 Feb 8.

13.

Single-site transcription rates through fitting of ensemble-averaged data from fluorescence recovery after photobleaching: a fat-tailed distribution.

Rosenfeld L, Kepten E, Yunger S, Shav-Tal Y, Garini Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032715. doi: 10.1103/PhysRevE.92.032715. Epub 2015 Sep 17.

PMID:
26465506
14.

Uniform Contraction-Expansion Description of Relative Centromere and Telomere Motion.

Kepten E, Weron A, Bronstein I, Burnecki K, Garini Y.

Biophys J. 2015 Oct 6;109(7):1454-62. doi: 10.1016/j.bpj.2015.07.031.

15.

Loss of lamin A function increases chromatin dynamics in the nuclear interior.

Bronshtein I, Kepten E, Kanter I, Berezin S, Lindner M, Redwood AB, Mai S, Gonzalo S, Foisner R, Shav-Tal Y, Garini Y.

Nat Commun. 2015 Aug 24;6:8044. doi: 10.1038/ncomms9044.

16.

The proteolysis adaptor, NblA, is essential for degradation of the core pigment of the cyanobacterial light-harvesting complex.

Sendersky E, Kozer N, Levi M, Moizik M, Garini Y, Shav-Tal Y, Schwarz R.

Plant J. 2015 Sep;83(5):845-52. doi: 10.1111/tpj.12931. Epub 2015 Aug 1.

17.

Estimating the anomalous diffusion exponent for single particle tracking data with measurement errors - An alternative approach.

Burnecki K, Kepten E, Garini Y, Sikora G, Weron A.

Sci Rep. 2015 Jun 11;5:11306. doi: 10.1038/srep11306.

18.

Direct transfer of viral and cellular proteins from varicella-zoster virus-infected non-neuronal cells to human axons.

Grigoryan S, Yee MB, Glick Y, Gerber D, Kepten E, Garini Y, Yang IH, Kinchington PR, Goldstein RS.

PLoS One. 2015 May 14;10(5):e0126081. doi: 10.1371/journal.pone.0126081. eCollection 2015.

19.

Guidelines for the fitting of anomalous diffusion mean square displacement graphs from single particle tracking experiments.

Kepten E, Weron A, Sikora G, Burnecki K, Garini Y.

PLoS One. 2015 Feb 13;10(2):e0117722. doi: 10.1371/journal.pone.0117722. eCollection 2015.

20.

The proteolysis adaptor, NblA, initiates protein pigment degradation by interacting with the cyanobacterial light-harvesting complexes.

Sendersky E, Kozer N, Levi M, Garini Y, Shav-Tal Y, Schwarz R.

Plant J. 2014 Jul;79(1):118-26. doi: 10.1111/tpj.12543. Epub 2014 Jun 13.

21.

Mating regulates neuromodulator ensembles at nerve termini innervating the Drosophila reproductive tract.

Heifetz Y, Lindner M, Garini Y, Wolfner MF.

Curr Biol. 2014 Mar 31;24(7):731-7. doi: 10.1016/j.cub.2014.02.042. Epub 2014 Mar 13.

22.

Single-particle tracking for studying the dynamic properties of genomic regions in live cells.

Berger IB, Kepten E, Garini Y.

Methods Mol Biol. 2013;1042:139-51. doi: 10.1007/978-1-62703-526-2_10.

PMID:
23980005
23.

Improved estimation of anomalous diffusion exponents in single-particle tracking experiments.

Kepten E, Bronshtein I, Garini Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 May;87(5):052713. Epub 2013 May 20.

PMID:
23767572
24.

Preparation of homogeneous samples of double-labelled protein suitable for single-molecule FRET measurements.

Lerner E, Hilzenrat G, Amir D, Tauber E, Garini Y, Haas E.

Anal Bioanal Chem. 2013 Jul;405(18):5983-91. doi: 10.1007/s00216-013-7002-2. Epub 2013 May 7.

PMID:
23649926
25.

Dynamic analysis of a diffusing particle in a trapping potential.

Lindner M, Nir G, Vivante A, Young IT, Garini Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Feb;87(2):022716. Epub 2013 Feb 25.

PMID:
23496557
26.

Quantifying the transcriptional output of single alleles in single living mammalian cells.

Yunger S, Rosenfeld L, Garini Y, Shav-Tal Y.

Nat Protoc. 2013 Feb;8(2):393-408.

27.

Universal algorithm for identification of fractional Brownian motion. A case of telomere subdiffusion.

Burnecki K, Kepten E, Janczura J, Bronshtein I, Garini Y, Weron A.

Biophys J. 2012 Nov 7;103(9):1839-47. doi: 10.1016/j.bpj.2012.09.040.

28.

Ergodicity convergence test suggests telomere motion obeys fractional dynamics.

Kepten E, Bronshtein I, Garini Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Apr;83(4 Pt 1):041919. Epub 2011 Apr 22.

PMID:
21599212
29.

Force-free measurements of the conformations of DNA molecules tethered to a wall.

Lindner M, Nir G, Medalion S, Dietrich HR, Rabin Y, Garini Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jan;83(1 Pt 1):011916. Epub 2011 Jan 27.

PMID:
21405722
30.

Translocation frequencies and chromosomal proximities for selected mouse chromosomes in primary B lymphocytes.

Righolt CH, Wiener F, Taylor-Kashton C, Harizanova J, Vermolen BJ, Garini Y, Young IT, Mai S.

Cytometry A. 2011 Apr;79(4):276-83. doi: 10.1002/cyto.a.21038. Epub 2011 Mar 8.

31.

HU protein induces incoherent DNA persistence length.

Nir G, Lindner M, Dietrich HRC, Girshevitz O, Vorgias CE, Garini Y.

Biophys J. 2011 Feb 2;100(3):784-790. doi: 10.1016/j.bpj.2010.12.3687.

32.

Novel automated three-dimensional genome scanning based on the nuclear architecture of telomeres.

Klewes L, Höbsch C, Katzir N, Rourke D, Garini Y, Mai S.

Cytometry A. 2011 Feb;79(2):159-66. doi: 10.1002/cyto.a.21012. Epub 2010 Dec 30.

33.

Single-allele analysis of transcription kinetics in living mammalian cells.

Yunger S, Rosenfeld L, Garini Y, Shav-Tal Y.

Nat Methods. 2010 Aug;7(8):631-3. doi: 10.1038/nmeth.1482. Epub 2010 Jul 18.

PMID:
20639867
34.

Built-in quantum dot antennas in dye-sensitized solar cells.

Buhbut S, Itzhakov S, Tauber E, Shalom M, Hod I, Geiger T, Garini Y, Oron D, Zaban A.

ACS Nano. 2010 Mar 23;4(3):1293-8. doi: 10.1021/nn100021b.

PMID:
20155968
35.

Three-dimensional nuclear telomere architecture is associated with differential time to progression and overall survival in glioblastoma patients.

Gadji M, Fortin D, Tsanaclis AM, Garini Y, Katzir N, Wienburg Y, Yan J, Klewes L, Klonisch T, Drouin R, Mai S.

Neoplasia. 2010 Feb;12(2):183-91.

36.

Transient anomalous diffusion of telomeres in the nucleus of mammalian cells.

Bronstein I, Israel Y, Kepten E, Mai S, Shav-Tal Y, Barkai E, Garini Y.

Phys Rev Lett. 2009 Jul 3;103(1):018102. Epub 2009 Jul 2.

PMID:
19659180
37.

The localization and photosensitization of modified chlorin photosensitizers in artificial membranes.

Dror SB, Bronshtein I, Garini Y, O'Neal WG, Jacobi PA, Ehrenberg B.

Photochem Photobiol Sci. 2009 Mar;8(3):354-61. doi: 10.1039/b814970d. Epub 2009 Jan 5.

PMID:
19255676
38.

The nuclear lamina promotes telomere aggregation and centromere peripheral localization during senescence of human mesenchymal stem cells.

Raz V, Vermolen BJ, Garini Y, Onderwater JJ, Mommaas-Kienhuis MA, Koster AJ, Young IT, Tanke H, Dirks RW.

J Cell Sci. 2008 Dec 15;121(Pt 24):4018-28. doi: 10.1242/jcs.034876.

39.

Segmentation and analysis of the three-dimensional redistribution of nuclear components in human mesenchymal stem cells.

Vermolen BJ, Garini Y, Young IT, Dirks RW, Raz V.

Cytometry A. 2008 Sep;73(9):816-24. doi: 10.1002/cyto.a.20612.

40.

Centromeres in cell division, evolution, nuclear organization and disease.

Gonçalves Dos Santos Silva A, Sarkar R, Harizanova J, Guffei A, Mowat M, Garini Y, Mai S.

J Cell Biochem. 2008 Aug 15;104(6):2040-58. doi: 10.1002/jcb.21766. Review.

PMID:
18425771
41.

Size-dependent trajectories of DNA macromolecules due to insulative dielectrophoresis in submicrometer-deep fluidic channels.

Parikesit GO, Markesteijn AP, Piciu OM, Bossche A, Westerweel J, Young IT, Garini Y.

Biomicrofluidics. 2008 May 6;2(2):24103. doi: 10.1063/1.2930817.

42.

Alterations of centromere positions in nuclei of immortalized and malignant mouse lymphocytes.

Sarkar R, Guffei A, Vermolen BJ, Garini Y, Mai S.

Cytometry A. 2007 Jun;71(6):386-92.

43.

Measuring the wavelength-dependent divergence of transmission through sub-wavelength hole-arrays by spectral imaging.

Docter MW, Young IT, Piciu OM, Bossche A, Alkemade PF, van den Berg PM, Garini Y.

Opt Express. 2006 Oct 2;14(20):9477-82.

PMID:
19529334
44.

Changes in lamina structure are followed by spatial reorganization of heterochromatic regions in caspase-8-activated human mesenchymal stem cells.

Raz V, Carlotti F, Vermolen BJ, van der Poel E, Sloos WC, Knaän-Shanzer S, de Vries AA, Hoeben RC, Young IT, Tanke HJ, Garini Y, Dirks RW.

J Cell Sci. 2006 Oct 15;119(Pt 20):4247-56. Epub 2006 Sep 26.

45.

Spectral imaging: principles and applications.

Garini Y, Young IT, McNamara G.

Cytometry A. 2006 Aug 1;69(8):735-47. Review.

46.

Telomeric aggregates and end-to-end chromosomal fusions require myc box II.

Caporali A, Wark L, Vermolen BJ, Garini Y, Mai S.

Oncogene. 2007 Mar 1;26(10):1398-406. Epub 2006 Sep 4.

PMID:
16953226
47.

Confocal 3D DNA cytometry: assessment of required coefficient of variation by computer simulation.

Garini Y.

Cell Oncol. 2006;28(3):121-2; author reply 123. No abstract available.

48.

The significance of telomeric aggregates in the interphase nuclei of tumor cells.

Mai S, Garini Y.

J Cell Biochem. 2006 Apr 1;97(5):904-15. Review.

PMID:
16408280
50.

Electroosmotic flow analysis of a branched U-turn nanofluidic device.

Parikesit GO, Markesteijn AP, Kutchoukov VG, Piciu O, Bossche A, Westerweel J, Garini Y, Young IT.

Lab Chip. 2005 Oct;5(10):1067-74. Epub 2005 Jul 18.

PMID:
16175262

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