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Items: 1 to 50 of 406

1.

Introducing plasma/serum glycodepletion for the targeted proteomics analysis of cytolysis biomarkers.

Maes P, Donadio-Andréi S, Louwagie M, Couté Y, Picard G, Lacoste C, Bruley C, Garin J, Ichai P, Faivre J, Jaquinod M, Brun V.

Talanta. 2017 Aug 1;170:473-480. doi: 10.1016/j.talanta.2017.04.042. Epub 2017 Apr 19.

2.

Large-Scale SRM Screen of Urothelial Bladder Cancer Candidate Biomarkers in Urine.

Duriez E, Masselon CD, Mesmin C, Court M, Demeure K, Allory Y, Malats N, Matondo M, Radvanyi F, Garin J, Domon B.

J Proteome Res. 2017 Apr 7;16(4):1617-1631. doi: 10.1021/acs.jproteome.6b00979. Epub 2017 Mar 23.

PMID:
28287737
3.

Multiplex and accurate quantification of acute kidney injury biomarker candidates in urine using Protein Standard Absolute Quantification (PSAQ) and targeted proteomics.

Gilquin B, Louwagie M, Jaquinod M, Cez A, Picard G, El Kholy L, Surin B, Garin J, Ferro M, Kofman T, Barau C, Plaisier E, Ronco P, Brun V.

Talanta. 2017 Mar 1;164:77-84. doi: 10.1016/j.talanta.2016.11.023. Epub 2016 Nov 13.

PMID:
28107998
4.

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.

Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C.

J Proteome Res. 2016 Nov 4;15(11):3998-4019. Epub 2016 Aug 23.

PMID:
27444420
5.

Development and Preliminary Validation of the Coma Arousal Communication Scale.

Garin J, Reina M, DeiCas P, Rousseaux M.

J Head Trauma Rehabil. 2016 Nov/Dec;31(6):E53-E61.

PMID:
26709581
6.

Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.

Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A.

Data Brief. 2015 Dec 17;6:286-94. doi: 10.1016/j.dib.2015.11.063. eCollection 2016 Mar.

7.

D-π-A Compounds with Tunable Intramolecular Charge Transfer Achieved by Incorporation of Butenolide Nitriles as Acceptor Moieties.

Moreno-Yruela C, Garín J, Orduna J, Franco S, Quintero E, López Navarrete JT, Diosdado BE, Villacampa B, Casado J, Andreu R.

J Org Chem. 2015 Dec 18;80(24):12115-28. doi: 10.1021/acs.joc.5b02051. Epub 2015 Dec 4.

PMID:
26588012
8.

Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.

Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A.

J Proteomics. 2016 Jan 30;132:51-62. doi: 10.1016/j.jprot.2015.11.011. Epub 2015 Nov 14.

PMID:
26585461
9.

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y.

J Proteome Res. 2015 Sep 4;14(9):3621-34. doi: 10.1021/pr5010345. Epub 2015 Jul 22.

PMID:
26132440
10.

DIGESTIF: a universal quality standard for the control of bottom-up proteomics experiments.

Lebert D, Louwagie M, Goetze S, Picard G, Ossola R, Duquesne C, Basler K, Ferro M, Rinner O, Aebersold R, Garin J, Mouz N, Brunner E, Brun V.

J Proteome Res. 2015 Feb 6;14(2):787-803. doi: 10.1021/pr500834z. Epub 2014 Dec 30.

PMID:
25495225
11.

Urine sample preparation and fractionation for global proteome profiling by LC-MS.

Court M, Garin J, Masselon CD.

Methods Mol Biol. 2015;1243:175-86. doi: 10.1007/978-1-4939-1872-0_10.

PMID:
25384746
12.

Dithienopyrrole as a rigid alternative to the bithiophene π relay in chromophores with second-order nonlinear optical properties.

Marco AB, Martínez de Baroja N, Franco S, Garín J, Orduna J, Villacampa B, Revuelto A, Andreu R.

Chem Asian J. 2015 Jan;10(1):188-97. doi: 10.1002/asia.201402870. Epub 2014 Oct 7.

PMID:
25293809
13.

Computational modeling of the main signaling pathways involved in mast cell activation.

Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse AM, Garin J, Malissen B, Daëron M, Thieffry D.

Curr Top Microbiol Immunol. 2014;382:69-93. doi: 10.1007/978-3-319-07911-0_4. Review.

PMID:
25116096
14.

Mass spectrometry-based workflow for accurate quantification of Escherichia coli enzymes: how proteomics can play a key role in metabolic engineering.

Trauchessec M, Jaquinod M, Bonvalot A, Brun V, Bruley C, Ropers D, de Jong H, Garin J, Bestel-Corre G, Ferro M.

Mol Cell Proteomics. 2014 Apr;13(4):954-68. doi: 10.1074/mcp.M113.032672. Epub 2014 Jan 29.

15.

Push-pull systems bearing a quinoid/aromatic thieno[3,2-b]thiophene moiety: synthesis, ground state polarization and second-order nonlinear properties.

Marco AB, Andreu R, Franco S, Garín J, Orduna J, Villacampa B, Diosdado BE, López Navarrete JT, Casado J.

Org Biomol Chem. 2013 Oct 7;11(37):6338-49. doi: 10.1039/c3ob41278d.

PMID:
23945744
16.

Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.

Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C.

Science. 2013 Jul 19;341(6143):281-6. doi: 10.1126/science.1239181. Erratum in: Science. 2013 Sep 27;341(6153):1452.

17.

Identification of a novel BET bromodomain inhibitor-sensitive, gene regulatory circuit that controls Rituximab response and tumour growth in aggressive lymphoid cancers.

Emadali A, Rousseaux S, Bruder-Costa J, Rome C, Duley S, Hamaidia S, Betton P, Debernardi A, Leroux D, Bernay B, Kieffer-Jaquinod S, Combes F, Ferri E, McKenna CE, Petosa C, Bruley C, Garin J, Ferro M, Gressin R, Callanan MB, Khochbin S.

EMBO Mol Med. 2013 Aug;5(8):1180-95. doi: 10.1002/emmm.201202034. Epub 2013 Jul 4.

18.

Proteomic analysis of the SH2 domain-containing leukocyte protein of 76 kDa (SLP76) interactome in resting and activated primary mast cells [corrected].

Bounab Y, Hesse AM, Iannascoli B, Grieco L, Couté Y, Niarakis A, Roncagalli R, Lie E, Lam KP, Demangel C, Thieffry D, Garin J, Malissen B, Daëron M.

Mol Cell Proteomics. 2013 Oct;12(10):2874-89. doi: 10.1074/mcp.M112.025908. Epub 2013 Jul 2. Erratum in: Mol Cell Proteomics. 2013 Feb ;13(2):678.

19.

Ureteric myxoedema. A new location in Graves' disease.

García-Arnés JA, García-Casares N, Soler J, Garín JM, Garriga MJ, León M.

Clin Endocrinol (Oxf). 2014 Apr;80(4):613-4. doi: 10.1111/cen.12250. Epub 2013 Jun 15. No abstract available.

PMID:
23692561
20.

Heptametallic, octupolar nonlinear optical chromophores with six ferrocenyl substituents.

Coe BJ, Foxon SP, Helliwell M, Rusanova D, Brunschwig BS, Clays K, Depotter G, Nyk M, Samoc M, Wawrzynczyk D, Garín J, Orduna J.

Chemistry. 2013 May 17;19(21):6613-29. doi: 10.1002/chem.201204453. Epub 2013 Mar 27.

PMID:
23536376
21.

A micro-silicon chip for in vivo cerebral imprint in monkey.

Zaccaria A, Bouamrani A, Selek L, El Atifi M, Hesse AM, Juhem A, Ratel D, Mathieu H, Coute Y, Bruley C, Garin J, Benabid AL, Chabardes S, Piallat B, Berger F.

ACS Chem Neurosci. 2013 Mar 20;4(3):385-92. doi: 10.1021/cn300116g. Epub 2013 Jan 15.

22.

An extended proteome map of the lysosomal membrane reveals novel potential transporters.

Chapel A, Kieffer-Jaquinod S, Sagné C, Verdon Q, Ivaldi C, Mellal M, Thirion J, Jadot M, Bruley C, Garin J, Gasnier B, Journet A.

Mol Cell Proteomics. 2013 Jun;12(6):1572-88. doi: 10.1074/mcp.M112.021980. Epub 2013 Feb 24.

23.

Cycloaddition reactions of polyenic donor-π-acceptor systems with an electron-rich alkyne: access to new chromophores with second-order optical nonlinearities.

Galán E, Andreu R, Garín J, Orduna J, Villacampa B, Diosdado BE.

Org Biomol Chem. 2012 Nov 21;10(43):8684-91. doi: 10.1039/c2ob26515j.

PMID:
23034533
24.

PSAQ™ standards for accurate MS-based quantification of proteins: from the concept to biomedical applications.

Picard G, Lebert D, Louwagie M, Adrait A, Huillet C, Vandenesch F, Bruley C, Garin J, Jaquinod M, Brun V.

J Mass Spectrom. 2012 Oct;47(10):1353-63. doi: 10.1002/jms.3106.

PMID:
23019168
25.

Multichromophoric calix[4]arenes: effect of interchromophore distances on linear and nonlinear optical properties.

Andreu R, Franco S, Garín J, Romero J, Villacampa B, Blesa MJ, Orduna J.

Chemphyschem. 2012 Sep 17;13(13):3204-9. doi: 10.1002/cphc.201200203. Epub 2012 Jun 15.

PMID:
22706898
26.

Introducing AAA-MS, a rapid and sensitive method for amino acid analysis using isotope dilution and high-resolution mass spectrometry.

Louwagie M, Kieffer-Jaquinod S, Dupierris V, Couté Y, Bruley C, Garin J, Dupuis A, Jaquinod M, Brun V.

J Proteome Res. 2012 Jul 6;11(7):3929-36. doi: 10.1021/pr3003326. Epub 2012 Jun 21.

PMID:
22681258
27.

Proteomic analysis of S-acylated proteins in human B cells reveals palmitoylation of the immune regulators CD20 and CD23.

Ivaldi C, Martin BR, Kieffer-Jaquinod S, Chapel A, Levade T, Garin J, Journet A.

PLoS One. 2012;7(5):e37187. doi: 10.1371/journal.pone.0037187. Epub 2012 May 17.

28.

Mass spectrometry-based absolute protein quantification: PSAQ™ strategy makes use of "noncanonical" proteotypic peptides.

Jaquinod M, Trauchessec M, Huillet C, Louwagie M, Lebert D, Picard G, Adrait A, Dupuis A, Garin J, Brun V, Bruley C.

Proteomics. 2012 Apr;12(8):1217-21. doi: 10.1002/pmic.201100538.

PMID:
22577023
29.

Synthesis, characterization, and optical properties of 4H-pyran-4-ylidene donor-based chromophores: the relevance of the location of a thiophene ring in the spacer.

Martínez de Baroja N, Garín J, Orduna J, Andreu R, Blesa MJ, Villacampa B, Alicante R, Franco S.

J Org Chem. 2012 May 18;77(10):4634-44. doi: 10.1021/jo300373m. Epub 2012 May 2.

PMID:
22524259
30.

Standard guidelines for the chromosome-centric human proteome project.

Paik YK, Omenn GS, Uhlen M, Hanash S, Marko-Varga G, Aebersold R, Bairoch A, Yamamoto T, Legrain P, Lee HJ, Na K, Jeong SK, He F, Binz PA, Nishimura T, Keown P, Baker MS, Yoo JS, Garin J, Archakov A, Bergeron J, Salekdeh GH, Hancock WS.

J Proteome Res. 2012 Apr 6;11(4):2005-13. doi: 10.1021/pr200824a. Epub 2012 Mar 26.

PMID:
22443261
31.

Terminal transport of lytic granules to the immune synapse is mediated by the kinesin-1/Slp3/Rab27a complex.

Kurowska M, Goudin N, Nehme NT, Court M, Garin J, Fischer A, de Saint Basile G, Ménasché G.

Blood. 2012 Apr 26;119(17):3879-89. doi: 10.1182/blood-2011-09-382556. Epub 2012 Feb 3. Erratum in: Blood. 2014 Feb 27;123(9):1432.

32.

New D-π-A-conjugated organic sensitizers based on 4H-pyran-4-ylidene donors for highly efficient dye-sensitized solar cells.

Franco S, Garín J, de Baroja NM, Pérez-Tejada R, Orduna J, Yu Y, Lira-Cantú M.

Org Lett. 2012 Feb 3;14(3):752-5. doi: 10.1021/ol203298r. Epub 2012 Jan 20.

PMID:
22264095
33.

Activated leukocyte cell adhesion molecule modulates neurotrophin signaling.

Wade A, Thomas C, Kalmar B, Terenzio M, Garin J, Greensmith L, Schiavo G.

J Neurochem. 2012 May;121(4):575-86. doi: 10.1111/j.1471-4159.2012.07658.x. Epub 2012 Feb 10.

34.

Development of a Protein Standard Absolute Quantification (PSAQ™) assay for the quantification of Staphylococcus aureus enterotoxin A in serum.

Adrait A, Lebert D, Trauchessec M, Dupuis A, Louwagie M, Masselon C, Jaquinod M, Chevalier B, Vandenesch F, Garin J, Bruley C, Brun V.

J Proteomics. 2012 Jun 6;75(10):3041-9. doi: 10.1016/j.jprot.2011.11.031. Epub 2011 Dec 6.

PMID:
22155127
35.

Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ™) and selected reaction monitoring.

Huillet C, Adrait A, Lebert D, Picard G, Trauchessec M, Louwagie M, Dupuis A, Hittinger L, Ghaleh B, Le Corvoisier P, Jaquinod M, Garin J, Bruley C, Brun V.

Mol Cell Proteomics. 2012 Feb;11(2):M111.008235. doi: 10.1074/mcp.M111.008235. Epub 2011 Nov 11.

36.

Proteomic strategy for the identification of critical actors in reorganization of the post-meiotic male genome.

Govin J, Gaucher J, Ferro M, Debernardi A, Garin J, Khochbin S, Rousseaux S.

Mol Hum Reprod. 2012 Jan;18(1):1-13. doi: 10.1093/molehr/gar063. Epub 2011 Oct 4.

PMID:
21971310
37.

Affinity chromatography: a valuable strategy to isolate substrates of methionine sulfoxide reductases?

Tarrago L, Kieffer-Jaquinod S, Lamant T, Marcellin MN, Garin JR, Rouhier N, Rey P.

Antioxid Redox Signal. 2012 Jan 1;16(1):79-84. doi: 10.1089/ars.2011.4153. Epub 2011 Sep 1.

PMID:
21882992
38.

Production and use of stable isotope-labeled proteins for absolute quantitative proteomics.

Lebert D, Dupuis A, Garin J, Bruley C, Brun V.

Methods Mol Biol. 2011;753:93-115. doi: 10.1007/978-1-61779-148-2_7.

PMID:
21604118
39.

Chromatin remodeling as a mechanism for circadian prolactin transcription: rhythmic NONO and SFPQ recruitment to HLTF.

Guillaumond F, Boyer B, Becquet D, Guillen S, Kuhn L, Garin J, Belghazi M, Bosler O, Franc JL, François-Bellan AM.

FASEB J. 2011 Aug;25(8):2740-56. doi: 10.1096/fj.10-178616. Epub 2011 Apr 19.

PMID:
21507896
40.

Investigating the plant response to cadmium exposure by proteomic and metabolomic approaches.

Villiers F, Ducruix C, Hugouvieux V, Jarno N, Ezan E, Garin J, Junot C, Bourguignon J.

Proteomics. 2011 May;11(9):1650-63. doi: 10.1002/pmic.201000645. Epub 2011 Apr 4. Review.

PMID:
21462346
41.

Identification of proteomic signatures of mantle cell lymphoma, small lymphocytic lymphoma, and marginal zone lymphoma biopsies by surface enhanced laser desorption/ionization-time of flight mass spectrometry.

Rolland D, Bouamrani A, Houlgatte R, Barbarat A, Ramus C, Arlotto M, Ballester B, Berger F, Felman P, Callet-Bauchu E, Baseggio L, Traverse-Glehen A, Brugière S, Garin J, Coiffier B, Berger F, Thieblemont C.

Leuk Lymphoma. 2011 Apr;52(4):648-58. doi: 10.3109/10428194.2010.549256. Epub 2011 Jan 11.

PMID:
21438832
42.

Toward a standardized urine proteome analysis methodology.

Court M, Selevsek N, Matondo M, Allory Y, Garin J, Masselon CD, Domon B.

Proteomics. 2011 Mar;11(6):1160-71. doi: 10.1002/pmic.201000566. Epub 2011 Feb 16.

PMID:
21328537
43.

Evaluation of four commercial rapid immunochromatographic assays for detection of Cryptosporidium antigens in stool samples: a blind multicenter trial.

Agnamey P, Sarfati C, Pinel C, Rabodoniriina M, Kapel N, Dutoit E, Garnaud C, Diouf M, Garin JF, Totet A, Derouin F; ANOFEL Cryptosporidium National Network.

J Clin Microbiol. 2011 Apr;49(4):1605-7. doi: 10.1128/JCM.02074-10. Epub 2011 Feb 2.

44.

Aromatic/proaromatic donors in 2-dicyanomethylenethiazole merocyanines: from neutral to strongly zwitterionic nonlinear optical chromophores.

Andreu R, Galán E, Orduna J, Villacampa B, Alicante R, Navarrete JT, Casado J, Garín J.

Chemistry. 2011 Jan 17;17(3):826-38. doi: 10.1002/chem.201002158. Epub 2010 Nov 29.

PMID:
21226097
45.

Comprehensive human urine standards for comparability and standardization in clinical proteome analysis.

Mischak H, Kolch W, Aivaliotis M, Bouyssié D, Court M, Dihazi H, Dihazi GH, Franke J, Garin J, Gonzalez de Peredo A, Iphöfer A, Jänsch L, Lacroix C, Makridakis M, Masselon C, Metzger J, Monsarrat B, Mrug M, Norling M, Novak J, Pich A, Pitt A, Bongcam-Rudloff E, Siwy J, Suzuki H, Thongboonkerd V, Wang LS, Zoidakis J, Zürbig P, Schanstra JP, Vlahou A.

Proteomics Clin Appl. 2010 Apr;4(4):464-78. doi: 10.1002/prca.200900189. Epub 2010 Feb 3.

46.

Altered regulation of the OmpF porin by Fis in Escherichia coli during an evolution experiment and between B and K-12 strains.

Crozat E, Hindré T, Kühn L, Garin J, Lenski RE, Schneider D.

J Bacteriol. 2011 Jan;193(2):429-40. doi: 10.1128/JB.01341-10. Epub 2010 Nov 19.

47.

Expression of S100A8 in leukemic cells predicts poor survival in de novo AML patients.

Nicolas E, Ramus C, Berthier S, Arlotto M, Bouamrani A, Lefebvre C, Morel F, Garin J, Ifrah N, Berger F, Cahn JY, Mossuz P.

Leukemia. 2011 Jan;25(1):57-65. doi: 10.1038/leu.2010.251. Epub 2010 Nov 12.

PMID:
21072048
48.

Recommendations for biomarker identification and qualification in clinical proteomics.

Mischak H, Allmaier G, Apweiler R, Attwood T, Baumann M, Benigni A, Bennett SE, Bischoff R, Bongcam-Rudloff E, Capasso G, Coon JJ, D'Haese P, Dominiczak AF, Dakna M, Dihazi H, Ehrich JH, Fernandez-Llama P, Fliser D, Frokiaer J, Garin J, Girolami M, Hancock WS, Haubitz M, Hochstrasser D, Holman RR, Ioannidis JP, Jankowski J, Julian BA, Klein JB, Kolch W, Luider T, Massy Z, Mattes WB, Molina F, Monsarrat B, Novak J, Peter K, Rossing P, Sánchez-Carbayo M, Schanstra JP, Semmes OJ, Spasovski G, Theodorescu D, Thongboonkerd V, Vanholder R, Veenstra TD, Weissinger E, Yamamoto T, Vlahou A.

Sci Transl Med. 2010 Aug 25;2(46):46ps42. doi: 10.1126/scitranslmed.3001249.

PMID:
20739680
49.

Diquat derivatives: highly active, two-dimensional nonlinear optical chromophores with potential redox switchability.

Coe BJ, Fielden J, Foxon SP, Harris JA, Helliwell M, Brunschwig BS, Asselberghs I, Clays K, Garín J, Orduna J.

J Am Chem Soc. 2010 Aug 4;132(30):10498-512. doi: 10.1021/ja103289a.

PMID:
20617798
50.

Pdro, a protein associated with late endosomes and lysosomes and implicated in cellular cholesterol homeostasis.

Guillaumot P, Luquain C, Malek M, Huber AL, Brugière S, Garin J, Grunwald D, Régnier D, Pétrilli V, Lefai E, Manié SN.

PLoS One. 2010 Jun 8;5(6):e10977. doi: 10.1371/journal.pone.0010977.

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