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Items: 1 to 50 of 86

1.

Retroviral-like determinants and functions required for dimerization of Ty1 retrotransposon RNA.

Gumna J, Purzycka KJ, Ahn HW, Garfinkel DJ, Pachulska-Wieczorek K.

RNA Biol. 2019 Aug 30:1-15. doi: 10.1080/15476286.2019.1657370. [Epub ahead of print]

PMID:
31469343
2.

Ribosome Biogenesis Modulates Ty1 Copy Number Control in Saccharomyces cerevisiae.

Ahn HW, Tucker JM, Arribere JA, Garfinkel DJ.

Genetics. 2017 Dec;207(4):1441-1456. doi: 10.1534/genetics.117.300388. Epub 2017 Oct 18.

3.

Structure of Ty1 Internally Initiated RNA Influences Restriction Factor Expression.

Błaszczyk L, Biesiada M, Saha A, Garfinkel DJ, Purzycka KJ.

Viruses. 2017 Apr 10;9(4). pii: E74. doi: 10.3390/v9040074.

4.

Ty1 escapes restriction by the self-encoded factor p22 through mutations in capsid.

Tucker JM, Garfinkel DJ.

Mob Genet Elements. 2016 Mar 7;6(2):e1154639. eCollection 2016 Mar-Apr.

5.

Characterizing the functions of Ty1 Gag and the Gag-derived restriction factor p22/p18.

Pachulska-Wieczorek K, Błaszczyk L, Gumna J, Nishida Y, Saha A, Biesiada M, Garfinkel DJ, Purzycka KJ.

Mob Genet Elements. 2016 Mar 7;6(2):e1154637. eCollection 2016 Mar-Apr.

6.

Erratum for Saha et al., A trans-Dominant Form of Gag Restricts Ty1 Retrotransposition and Mediates Copy Number Control.

Saha A, Mitchell JA, Nishida Y, Hildreth JE, Arribere JA, Gilbert WV, Garfinkel DJ.

J Virol. 2016 Apr 29;90(10):5210. doi: 10.1128/JVI.00418-16. Print 2016 May 15. No abstract available.

7.

Erratum to: ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon.

Suresh S, Ahn HW, Joshi K, Dakshinamurthy A, Kannanganat A, Garfinkel DJ, Farabaugh PJ.

Mob DNA. 2016 Feb 9;7:5. doi: 10.1186/s13100-016-0060-1. eCollection 2016.

8.

Ribosomal protein and biogenesis factors affect multiple steps during movement of the Saccharomyces cerevisiae Ty1 retrotransposon.

Suresh S, Ahn HW, Joshi K, Dakshinamurthy A, Kananganat A, Garfinkel DJ, Farabaugh PJ.

Mob DNA. 2015 Dec 8;6:22. doi: 10.1186/s13100-015-0053-5. eCollection 2015. Erratum in: Mob DNA. 2016;7:5.

9.

A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces.

Garfinkel DJ, Tucker JM, Saha A, Nishida Y, Pachulska-Wieczorek K, Błaszczyk L, Purzycka KJ.

Curr Genet. 2016 May;62(2):321-9. doi: 10.1007/s00294-015-0550-6. Epub 2015 Dec 9. Review.

10.

The Ty1 Retrotransposon Restriction Factor p22 Targets Gag.

Tucker JM, Larango ME, Wachsmuth LP, Kannan N, Garfinkel DJ.

PLoS Genet. 2015 Oct 9;11(10):e1005571. doi: 10.1371/journal.pgen.1005571. eCollection 2015 Oct.

11.

Ty1 retrovirus-like element Gag contains overlapping restriction factor and nucleic acid chaperone functions.

Nishida Y, Pachulska-Wieczorek K, Błaszczyk L, Saha A, Gumna J, Garfinkel DJ, Purzycka KJ.

Nucleic Acids Res. 2015 Sep 3;43(15):7414-31. doi: 10.1093/nar/gkv695. Epub 2015 Jul 8.

12.

A trans-dominant form of Gag restricts Ty1 retrotransposition and mediates copy number control.

Saha A, Mitchell JA, Nishida Y, Hildreth JE, Ariberre JA, Gilbert WV, Garfinkel DJ.

J Virol. 2015 Apr;89(7):3922-38. doi: 10.1128/JVI.03060-14. Epub 2015 Jan 21. Erratum in: J Virol. 2016 Apr 29;90(10 ):5210.

13.

Influence of RNA structural elements on Ty1 retrotransposition.

Purzycka KJ, Garfinkel DJ, Boeke JD, Le Grice SF.

Mob Genet Elements. 2013 Mar 1;3(2):e25060.

14.

Exploring Ty1 retrotransposon RNA structure within virus-like particles.

Purzycka KJ, Legiewicz M, Matsuda E, Eizentstat LD, Lusvarghi S, Saha A, Le Grice SF, Garfinkel DJ.

Nucleic Acids Res. 2013 Jan 7;41(1):463-73. doi: 10.1093/nar/gks983. Epub 2012 Oct 23.

15.

Ty1 gag enhances the stability and nuclear export of Ty1 mRNA.

Checkley MA, Mitchell JA, Eizenstat LD, Lockett SJ, Garfinkel DJ.

Traffic. 2013 Jan;14(1):57-69. doi: 10.1111/tra.12013. Epub 2012 Oct 17.

16.

BUD22 affects Ty1 retrotransposition and ribosome biogenesis in Saccharomyces cerevisiae.

Dakshinamurthy A, Nyswaner KM, Farabaugh PJ, Garfinkel DJ.

Genetics. 2010 Aug;185(4):1193-205. doi: 10.1534/genetics.110.119115. Epub 2010 May 24.

17.

P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles.

Checkley MA, Nagashima K, Lockett SJ, Nyswaner KM, Garfinkel DJ.

Mol Cell Biol. 2010 Jan;30(2):382-98. doi: 10.1128/MCB.00251-09. Epub 2009 Nov 9.

18.

Posttranslational interference of Ty1 retrotransposition by antisense RNAs.

Matsuda E, Garfinkel DJ.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15657-62. doi: 10.1073/pnas.0908305106. Epub 2009 Aug 31.

19.

Functional analysis of N-terminal residues of ty1 integrase.

Moore SP, Garfinkel DJ.

J Virol. 2009 Sep;83(18):9502-11. doi: 10.1128/JVI.00159-09. Epub 2009 Jul 1.

20.

Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis.

Nyswaner KM, Checkley MA, Yi M, Stephens RM, Garfinkel DJ.

Genetics. 2008 Jan;178(1):197-214. doi: 10.1534/genetics.107.082602.

21.

S-phase checkpoint pathways stimulate the mobility of the retrovirus-like transposon Ty1.

Curcio MJ, Kenny AE, Moore S, Garfinkel DJ, Weintraub M, Gamache ER, Scholes DT.

Mol Cell Biol. 2007 Dec;27(24):8874-85. Epub 2007 Oct 8.

22.

Retrotransposon suicide: formation of Ty1 circles and autointegration via a central DNA flap.

Garfinkel DJ, Stefanisko KM, Nyswaner KM, Moore SP, Oh J, Hughes SH.

J Virol. 2006 Dec;80(24):11920-34. Epub 2006 Sep 27.

23.

p205, a potential tumor suppressor, inhibits cell proliferation via multiple pathways of cell cycle regulation.

Asefa B, Dermott JM, Kaldis P, Stefanisko K, Garfinkel DJ, Keller JR.

FEBS Lett. 2006 Feb 20;580(5):1205-14. Epub 2006 Jan 20.

24.

Sensitive phenotypic detection of minor drug-resistant human immunodeficiency virus type 1 reverse transcriptase variants.

Nissley DV, Halvas EK, Hoppman NL, Garfinkel DJ, Mellors JW, Strathern JN.

J Clin Microbiol. 2005 Nov;43(11):5696-704.

25.

Genome evolution mediated by Ty elements in Saccharomyces.

Garfinkel DJ.

Cytogenet Genome Res. 2005;110(1-4):63-9. Review.

PMID:
16093659
26.

Ty1 copy number dynamics in Saccharomyces.

Garfinkel DJ, Nyswaner KM, Stefanisko KM, Chang C, Moore SP.

Genetics. 2005 Apr;169(4):1845-57. Epub 2005 Jan 31.

27.

Analysis of a Ty1-less variant of Saccharomyces paradoxus: the gain and loss of Ty1 elements.

Moore SP, Liti G, Stefanisko KM, Nyswaner KM, Chang C, Louis EJ, Garfinkel DJ.

Yeast. 2004 Jun;21(8):649-60.

28.

Post-transcriptional cosuppression of Ty1 retrotransposition.

Garfinkel DJ, Nyswaner K, Wang J, Cho JY.

Genetics. 2003 Sep;165(1):83-99.

29.

Survival strategies for transposons and genomes.

Martin SL, Garfinkel DJ.

Genome Biol. 2003;4(4):313. Epub 2003 Mar 28.

30.

The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae.

Sundararajan A, Lee BS, Garfinkel DJ.

Genetics. 2003 Jan;163(1):55-67.

31.
32.

Functional profiling of the Saccharomyces cerevisiae genome.

Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Güldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kötter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookhai-Mahadeo S, Storms RK, Strathern JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA, Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW, Johnston M.

Nature. 2002 Jul 25;418(6896):387-91.

PMID:
12140549
33.

Chemical cleavage at aspartyl residues for protein identification.

Li A, Sowder RC, Henderson LE, Moore SP, Garfinkel DJ, Fisher RJ.

Anal Chem. 2001 Nov 15;73(22):5395-402.

PMID:
11816565
34.

Correct integration of model substrates by Ty1 integrase.

Moore SP, Garfinkel DJ.

J Virol. 2000 Dec;74(24):11522-30.

35.

The genomic RNA in Ty1 virus-like particles is dimeric.

Feng YX, Moore SP, Garfinkel DJ, Rein A.

J Virol. 2000 Nov;74(22):10819-21.

37.
38.

New lines of host defense: inhibition of Ty1 retrotransposition by Fus3p and NER/TFIIH.

Curcio MJ, Garfinkel DJ.

Trends Genet. 1999 Feb;15(2):43-5. Review.

PMID:
10098404
39.

Corrigendum to: 'Utilization of microhomologous recombination in yeast to generate targeting constructs for mammalian genes'

Khrebtukova I I, Michaud EJ, Foster CM, Stark KL, Garfinkel DJ, Woychik RP.

Mutat Res. 1999 Jan 25;423(1-2):191. No abstract available.

PMID:
10029697
41.

Hybrid Ty1/HIV-1 elements used to detect inhibitors and monitor the activity of HIV-1 reverse transcriptase.

Nissley DV, Boyer PL, Garfinkel DJ, Hughes SH, Strathern JN.

Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13905-10.

42.

Utilization of microhomologous recombination in yeast to generate targeting constructs for mammalian genes.

Khrebtukova I, Michaud EJ, Foster CM, Stark KL, Garfinkel DJ, Woychik RP.

Mutat Res. 1998 Jun 5;401(1-2):11-25. Erratum in: Mutat Res 1999 Jan 25;423(1-2):191.

PMID:
9639665
43.

Posttranslational regulation of Ty1 retrotransposition by mitogen-activated protein kinase Fus3.

Conte D Jr, Barber E, Banerjee M, Garfinkel DJ, Curcio MJ.

Mol Cell Biol. 1998 May;18(5):2502-13. Erratum in: Mol Cell Biol 1998 Sep;18(9):5620.

44.

Posttranslational inhibition of Ty1 retrotransposition by nucleotide excision repair/transcription factor TFIIH subunits Ssl2p and Rad3p.

Lee BS, Lichtenstein CP, Faiola B, Rinckel LA, Wysock W, Curcio MJ, Garfinkel DJ.

Genetics. 1998 Apr;148(4):1743-61.

45.

A Ty1 integrase nuclear localization signal required for retrotransposition.

Moore SP, Rinckel LA, Garfinkel DJ.

Mol Cell Biol. 1998 Feb;18(2):1105-14.

46.
47.

Genetic loose change: how retroelements and reverse transcriptase heal broken chromosomes.

Garfinkel DJ.

Trends Microbiol. 1997 May;5(5):173-5. No abstract available.

PMID:
9160501
48.

Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast.

Bryk M, Banerjee M, Murphy M, Knudsen KE, Garfinkel DJ, Curcio MJ.

Genes Dev. 1997 Jan 15;11(2):255-69.

49.

Presence of Ty1-copia group retrotransposon sequences in the potato late blight pathogen Phytophthora infestans.

Tooley PW, Garfinkel DJ.

Mol Plant Microbe Interact. 1996 May;9(4):305-9.

PMID:
8634480
50.

HIV reverse transcription in yeast.

Nissley DV, Garfinkel DJ, Strathern JN.

Nature. 1996 Mar 7;380(6569):30. No abstract available.

PMID:
8598898

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