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Items: 1 to 50 of 155


Gene technologies in weed management: a technical feasibility analysis.

Kumaran N, Choudhary A, Legros M, Sheppard AW, Barrett LG, Gardiner DM, Raghu S.

Curr Opin Insect Sci. 2020 Jan 30;38:6-14. doi: 10.1016/j.cois.2019.12.003. [Epub ahead of print] Review.


Role of the XylA gene, encoding a cell wall degrading enzyme, during common wheat, durum wheat and barley colonization by Fusarium graminearum.

Tini F, Beccari G, Benfield AH, Gardiner DM, Covarelli L.

Fungal Genet Biol. 2020 Mar;136:103318. doi: 10.1016/j.fgb.2019.103318. Epub 2019 Dec 11.


Fusaristatin A production negatively affects the growth and aggressiveness of the wheat pathogen Fusarium pseudograminearum.

Khudhair M, Kazan K, Thatcher LF, Obanor F, Rusu A, Sørensen JL, Wollenberg RD, McKay A, Giblot-Ducray D, Simpfendorfer S, Aitken E, Gardiner DM.

Fungal Genet Biol. 2020 Mar;136:103314. doi: 10.1016/j.fgb.2019.103314. Epub 2019 Dec 4.


Gene drives in plants: opportunities and challenges for weed control and engineered resilience.

Barrett LG, Legros M, Kumaran N, Glassop D, Raghu S, Gardiner DM.

Proc Biol Sci. 2019 Sep 25;286(1911):20191515. doi: 10.1098/rspb.2019.1515. Epub 2019 Sep 25.


Heterologous expression of intact biosynthetic gene clusters in Fusarium graminearum.

Nielsen MR, Wollenberg RD, Westphal KR, Sondergaard TE, Wimmer R, Gardiner DM, Sørensen JL.

Fungal Genet Biol. 2019 Nov;132:103248. doi: 10.1016/j.fgb.2019.103248. Epub 2019 Jul 4.


Regulation of a novel Fusarium cytokinin in Fusarium pseudograminearum.

Blum A, Benfield AH, Sørensen JL, Nielsen MR, Bachleitner S, Studt L, Beccari G, Covarelli L, Batley J, Gardiner DM.

Fungal Biol. 2019 Mar;123(3):255-266. doi: 10.1016/j.funbio.2018.12.009. Epub 2019 Jan 7.


There it is! Fusarium pseudograminearum did not lose the fusaristatin gene cluster after all.

Wollenberg RD, Sondergaard TE, Nielsen MR, Knutsson S, Pedersen TB, Westphal KR, Wimmer R, Gardiner DM, Sørensen JL.

Fungal Biol. 2019 Jan;123(1):10-17. doi: 10.1016/j.funbio.2018.10.004. Epub 2018 Oct 28.


Nanoscale enrichment of the cytosolic enzyme trichodiene synthase near reorganized endoplasmic reticulum in Fusarium graminearum.

Boenisch MJ, Blum A, Broz KL, Gardiner DM, Kistler HC.

Fungal Genet Biol. 2019 Mar;124:73-77. doi: 10.1016/j.fgb.2018.12.008. Epub 2018 Dec 21.


Genome Sequences of Three Isolates of Fusarium verticillioides.

Gardiner DM.

Microbiol Resour Announc. 2018 Aug 30;7(8). pii: e00918-18. doi: 10.1128/MRA.00918-18. eCollection 2018 Aug.


Regeneration: sooner rather than later.

Bryant SV, Gardiner DM.

Int J Dev Biol. 2018;62(6-7-8):363-368. doi: 10.1387/ijdb.170269dg.


Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

Sperschneider J, Dodds PN, Gardiner DM, Singh KB, Taylor JM.

Mol Plant Pathol. 2018 Sep;19(9):2094-2110. doi: 10.1111/mpp.12682. Epub 2018 May 11.


Selection is required for efficient Cas9-mediated genome editing in Fusarium graminearum.

Gardiner DM, Kazan K.

Fungal Biol. 2018 Feb - Mar;122(2-3):131-137. doi: 10.1016/j.funbio.2017.11.006. Epub 2017 Dec 6.


Regulation of regeneration by Heparan Sulfate Proteoglycans in the Extracellular Matrix.

Gardiner DM.

Regen Eng Transl Med. 2017 Sep;3(3):192-198. doi: 10.1007/s40883-017-0037-8. Epub 2017 Aug 14.


The Axolotl Limb Regeneration Model as a Discovery Tool for Engineering the Stem Cell Niche.

Seyedhassantehrani N, Otsuka T, Singh S, Gardiner DM.

Curr Stem Cell Rep. 2017 Sep;3(3):156-163. doi: 10.1007/s40778-017-0085-5. Epub 2017 Jul 27.


Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.

Powell JJ, Carere J, Sablok G, Fitzgerald TL, Stiller J, Colgrave ML, Gardiner DM, Manners JM, Vogel JP, Henry RJ, Kazan K.

Sci Rep. 2017 Dec 8;7(1):17212. doi: 10.1038/s41598-017-17454-3.


A multiple near isogenic line (multi-NIL) RNA-seq approach to identify candidate genes underpinning QTL.

Habib A, Powell JJ, Stiller J, Liu M, Shabala S, Zhou M, Gardiner DM, Liu C.

Theor Appl Genet. 2018 Mar;131(3):613-624. doi: 10.1007/s00122-017-3023-0. Epub 2017 Nov 23.


Fusarium crown rot caused by Fusarium pseudograminearum in cereal crops: recent progress and future prospects.

Kazan K, Gardiner DM.

Mol Plant Pathol. 2018 Jul;19(7):1547-1562. doi: 10.1111/mpp.12639. Epub 2018 Feb 9.


The cereal pathogen Fusarium pseudograminearum produces a new class of active cytokinins during infection.

Sørensen JL, Benfield AH, Wollenberg RD, Westphal K, Wimmer R, Nielsen MR, Nielsen KF, Carere J, Covarelli L, Beccari G, Powell J, Yamashino T, Kogler H, Sondergaard TE, Gardiner DM.

Mol Plant Pathol. 2018 May;19(5):1140-1154. doi: 10.1111/mpp.12593. Epub 2017 Oct 24.


Chrysogine Biosynthesis Is Mediated by a Two-Module Nonribosomal Peptide Synthetase.

Wollenberg RD, Saei W, Westphal KR, Klitgaard CS, Nielsen KL, Lysøe E, Gardiner DM, Wimmer R, Sondergaard TE, Sørensen JL.

J Nat Prod. 2017 Jul 28;80(7):2131-2135. doi: 10.1021/acs.jnatprod.6b00822. Epub 2017 Jul 14.


Targeting pathogen sterols: Defence and counterdefence?

Kazan K, Gardiner DM.

PLoS Pathog. 2017 May 18;13(5):e1006297. doi: 10.1371/journal.ppat.1006297. eCollection 2017 May. Review. No abstract available.


Transcriptomics of cereal-Fusarium graminearum interactions: what we have learned so far.

Kazan K, Gardiner DM.

Mol Plant Pathol. 2018 Mar;19(3):764-778. doi: 10.1111/mpp.12561. Epub 2017 Jun 7. Review.


LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

Sperschneider J, Catanzariti AM, DeBoer K, Petre B, Gardiner DM, Singh KB, Dodds PN, Taylor JM.

Sci Rep. 2017 Mar 16;7:44598. doi: 10.1038/srep44598.


A tomatinase-like enzyme acts as a virulence factor in the wheat pathogen Fusarium graminearum.

Carere J, Benfield AH, Ollivier M, Liu CJ, Kazan K, Gardiner DM.

Fungal Genet Biol. 2017 Mar;100:33-41. doi: 10.1016/j.fgb.2017.01.007. Epub 2017 Jan 18.


Mycotoxigenic Potentials of Fusarium Species in Various Culture Matrices Revealed by Mycotoxin Profiling.

Shi W, Tan Y, Wang S, Gardiner DM, De Saeger S, Liao Y, Wang C, Fan Y, Wang Z, Wu A.

Toxins (Basel). 2016 Dec 26;9(1). pii: E6. doi: 10.3390/toxins9010006.


The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.).

Powell JJ, Carere J, Fitzgerald TL, Stiller J, Covarelli L, Xu Q, Gubler F, Colgrave ML, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Ann Bot. 2017 Mar 1;119(5):853-867. doi: 10.1093/aob/mcw207.


A high-resolution genetic map of the cereal crown rot pathogen Fusarium pseudograminearum provides a near-complete genome assembly.

Gardiner DM, Benfield AH, Stiller J, Stephen S, Aitken K, Liu C, Kazan K.

Mol Plant Pathol. 2018 Jan;19(1):217-226. doi: 10.1111/mpp.12519. Epub 2017 Jan 25.


The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias.

Powell JJ, Fitzgerald TL, Stiller J, Berkman PJ, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Plant Biotechnol J. 2017 Apr;15(4):533-543. doi: 10.1111/pbi.12651. Epub 2016 Nov 11.


Histological image data of limb skeletal tissue from larval and adult Ambystoma mexicanum.

McCusker CD, Diaz-Castillo C, Sosnik J, Phan A, Gardiner DM.

Data Brief. 2016 Jul 20;8:1206-8. doi: 10.1016/j.dib.2016.07.028. eCollection 2016 Sep.


The relationship between growth and pattern formation.

Bryant SV, Gardiner DM.

Regeneration (Oxf). 2016 Apr 28;3(2):103-22. doi: 10.1002/reg2.55. eCollection 2016 Apr. Review.


Positional information in axolotl and mouse limb extracellular matrix is mediated via heparan sulfate and fibroblast growth factor during limb regeneration in the axolotl (Ambystoma mexicanum).

Phan AQ, Lee J, Oei M, Flath C, Hwe C, Mariano R, Vu T, Shu C, Dinh A, Simkin J, Muneoka K, Bryant SV, Gardiner DM.

Regeneration (Oxf). 2015 Oct 12;2(4):182-201. doi: 10.1002/reg2.40. eCollection 2015 Aug.


Enzyme-driven metabolomic screening: a proof-of-principle method for discovery of plant defence compounds targeted by pathogens.

Carere J, Colgrave ML, Stiller J, Liu C, Manners JM, Kazan K, Gardiner DM.

New Phytol. 2016 Nov;212(3):770-779. doi: 10.1111/nph.14067. Epub 2016 Jun 29.


Cartilage and bone cells do not participate in skeletal regeneration in Ambystoma mexicanum limbs.

McCusker CD, Diaz-Castillo C, Sosnik J, Q Phan A, Gardiner DM.

Dev Biol. 2016 Aug 1;416(1):26-33. doi: 10.1016/j.ydbio.2016.05.032. Epub 2016 Jun 14.


Gene expression during the first 28 days of axolotl limb regeneration I: Experimental design and global analysis of gene expression.

Voss SR, Palumbo A, Nagarajan R, Gardiner DM, Muneoka K, Stromberg AJ, Athippozhy AT.

Regeneration (Oxf). 2015 Jun;2(3):120-136. Epub 2015 Jun 19.


Welcome to Biomedicine Hub.

Chan JYH, Chan SHH, Cosci F, Gardiner DM, Gollasch M, Gwinn M, Isgaard J, Kalantar-Zadeh K, Patrinos GP, Rubinstein I, Schmid M, Sherman M, Simon HU, Stratakis CA, Tanner M, Zaenker KS.

Biomed Hub. 2016 Apr 27;1(1):1-2. doi: 10.1159/000446335. eCollection 2016 Jan-Apr. No abstract available.


High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production.

Blum A, Benfield AH, Stiller J, Kazan K, Batley J, Gardiner DM.

Fungal Genet Biol. 2016 May;90:1-11. doi: 10.1016/j.fgb.2016.02.005. Epub 2016 Feb 27.


The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearum.

Kettle AJ, Carere J, Batley J, Manners JM, Kazan K, Gardiner DM.

Fungal Genet Biol. 2016 Mar;88:44-53. doi: 10.1016/j.fgb.2016.01.015. Epub 2016 Jan 29.


EffectorP: predicting fungal effector proteins from secretomes using machine learning.

Sperschneider J, Gardiner DM, Dodds PN, Tini F, Covarelli L, Singh KB, Manners JM, Taylor JM.

New Phytol. 2016 Apr;210(2):743-61. doi: 10.1111/nph.13794. Epub 2015 Dec 17.


Positional plasticity in regenerating Amybstoma mexicanum limbs is associated with cell proliferation and pathways of cellular differentiation.

McCusker CD, Athippozhy A, Diaz-Castillo C, Fowlkes C, Gardiner DM, Voss SR.

BMC Dev Biol. 2015 Nov 23;15:45. doi: 10.1186/s12861-015-0095-4.


DNA Methylation Dynamics Regulate the Formation of a Regenerative Wound Epithelium during Axolotl Limb Regeneration.

Aguilar C, Gardiner DM.

PLoS One. 2015 Aug 26;10(8):e0134791. doi: 10.1371/journal.pone.0134791. eCollection 2015.


A γ-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexins.

Kettle AJ, Carere J, Batley J, Benfield AH, Manners JM, Kazan K, Gardiner DM.

Fungal Genet Biol. 2015 Oct;83:1-9. doi: 10.1016/j.fgb.2015.08.005. Epub 2015 Aug 18.


Advances and challenges in computational prediction of effectors from plant pathogenic fungi.

Sperschneider J, Dodds PN, Gardiner DM, Manners JM, Singh KB, Taylor JM.

PLoS Pathog. 2015 May 28;11(5):e1004806. doi: 10.1371/journal.ppat.1004806. eCollection 2015 May. No abstract available.


Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.

Sperschneider J, Gardiner DM, Thatcher LF, Lyons R, Singh KB, Manners JM, Taylor JM.

Genome Biol Evol. 2015 May 19;7(6):1613-27. doi: 10.1093/gbe/evv092.


Regulation of Axolotl (Ambystoma mexicanum) Limb Blastema Cell Proliferation by Nerves and BMP2 in Organotypic Slice Culture.

Lehrberg J, Gardiner DM.

PLoS One. 2015 Apr 29;10(4):e0123186. doi: 10.1371/journal.pone.0123186. eCollection 2015.


The axolotl limb blastema: cellular and molecular mechanisms driving blastema formation and limb regeneration in tetrapods.

McCusker C, Bryant SV, Gardiner DM.

Regeneration (Oxf). 2015 May 11;2(2):54-71. doi: 10.1002/reg2.32. eCollection 2015 Apr. Review.


Brachypodium as an emerging model for cereal-pathogen interactions.

Fitzgerald TL, Powell JJ, Schneebeli K, Hsia MM, Gardiner DM, Bragg JN, McIntyre CL, Manners JM, Ayliffe M, Watt M, Vogel JP, Henry RJ, Kazan K.

Ann Bot. 2015 Apr;115(5):717-31. doi: 10.1093/aob/mcv010. Review.


The accessory limb model: an alternative experimental system of limb regeneration.

Endo T, Gardiner DM, Makanae A, Satoh A.

Methods Mol Biol. 2015;1290:101-13. doi: 10.1007/978-1-4939-2495-0_8.


Degradation of the benzoxazolinone class of phytoalexins is important for virulence of Fusarium pseudograminearum towards wheat.

Kettle AJ, Batley J, Benfield AH, Manners JM, Kazan K, Gardiner DM.

Mol Plant Pathol. 2015 Dec;16(9):946-62. doi: 10.1111/mpp.12250. Epub 2015 Apr 15.


An update to polyketide synthase and non-ribosomal synthetase genes and nomenclature in Fusarium.

Hansen FT, Gardiner DM, Lysøe E, Fuertes PR, Tudzynski B, Wiemann P, Sondergaard TE, Giese H, Brodersen DE, Sørensen JL.

Fungal Genet Biol. 2015 Feb;75:20-9. doi: 10.1016/j.fgb.2014.12.004. Epub 2014 Dec 24. Review.


Identification of the biosynthetic gene clusters for the lipopeptides fusaristatin A and W493 B in Fusarium graminearum and F. pseudograminearum.

Sørensen JL, Sondergaard TE, Covarelli L, Fuertes PR, Hansen FT, Frandsen RJ, Saei W, Lukassen MB, Wimmer R, Nielsen KF, Gardiner DM, Giese H.

J Nat Prod. 2014 Dec 26;77(12):2619-25. doi: 10.1021/np500436r. Epub 2014 Nov 20.


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