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Items: 40

1.

Interactive impact of childhood maltreatment, depression, and age on cortical brain structure: mega-analytic findings from a large multi-site cohort.

Tozzi L, Garczarek L, Janowitz D, Stein DJ, Wittfeld K, Dobrowolny H, Lagopoulos J, Hatton SN, Hickie IB, Carballedo A, Brooks SJ, Vuletic D, Uhlmann A, Veer IM, Walter H, Bülow R, Völzke H, Klinger-König J, Schnell K, Schoepf D, Grotegerd D, Opel N, Dannlowski U, Kugel H, Schramm E, Konrad C, Kircher T, Jüksel D, Nenadić I, Krug A, Hahn T, Steinsträter O, Redlich R, Zaremba D, Zurowski B, Fu CHY, Dima D, Cole J, Grabe HJ, Connolly CG, Yang TT, Ho TC, LeWinn KZ, Li M, Groenewold NA, Salminen LE, Walter M, Simmons AN, van Erp TGM, Jahanshad N, Baune BT, van der Wee NJA, van Tol MJ, Penninx BWJH, Hibar DP, Thompson PM, Veltman DJ, Schmaal L, Frodl T; ‘for the ENIGMA-MDD Consortium’.

Psychol Med. 2019 May 14:1-12. doi: 10.1017/S003329171900093X. [Epub ahead of print]

PMID:
31084657
2.

Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus.

Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6457-6462. doi: 10.1073/pnas.1810491116. Epub 2019 Mar 7.

PMID:
30846551
3.

Comparison of photosynthetic performances of marine picocyanobacteria with different configurations of the oxygen-evolving complex.

Partensky F, Mella-Flores D, Six C, Garczarek L, Czjzek M, Marie D, Kotabová E, Felcmanová K, Prášil O.

Photosynth Res. 2018 Oct;138(1):57-71. doi: 10.1007/s11120-018-0539-3. Epub 2018 Jun 25.

PMID:
29938315
4.

A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle.

Partensky F, Six C, Ratin M, Garczarek L, Vaulot D, Probert I, Calteau A, Gourvil P, Marie D, Grébert T, Bouchier C, Le Panse S, Gachenot M, Rodríguez F, Garrido JL.

Sci Rep. 2018 Jun 14;8(1):9142. doi: 10.1038/s41598-018-27542-7.

5.

Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria.

Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P, Acinas SG, Kehoe DM, Garczarek L.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):E2010-E2019. doi: 10.1073/pnas.1717069115. Epub 2018 Feb 12.

6.

Relative stability of ploidy in a marine Synechococcus across various growth conditions.

Perez-Sepulveda B, Pitt F, N'Guyen AN, Ratin M, Garczarek L, Millard A, Scanlan DJ.

Environ Microbiol Rep. 2018 Aug;10(4):428-432. doi: 10.1111/1758-2229.12614. Epub 2018 Feb 6.

PMID:
29327508
7.

Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus.

Pittera J, Jouhet J, Breton S, Garczarek L, Partensky F, Maréchal É, Nguyen NA, Doré H, Ratin M, Pitt FD, Scanlan DJ, Six C.

Environ Microbiol. 2018 Feb;20(2):612-631. doi: 10.1111/1462-2920.13985. Epub 2017 Dec 14.

PMID:
29124854
8.

Adaptation to Blue Light in Marine Synechococcus Requires MpeU, an Enzyme with Similarity to Phycoerythrobilin Lyase Isomerases.

Mahmoud RM, Sanfilippo JE, Nguyen AA, Strnat JA, Partensky F, Garczarek L, Abo El Kassem N, Kehoe DM, Schluchter WM.

Front Microbiol. 2017 Feb 21;8:243. doi: 10.3389/fmicb.2017.00243. eCollection 2017.

9.

Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern pacific ocean.

Xia X, Partensky F, Garczarek L, Suzuki K, Guo C, Yan Cheung S, Liu H.

Environ Microbiol. 2017 Jan;19(1):142-158. doi: 10.1111/1462-2920.13541. Epub 2016 Dec 8.

PMID:
27668842
10.

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria.

Farrant GK, Doré H, Cornejo-Castillo FM, Partensky F, Ratin M, Ostrowski M, Pitt FD, Wincker P, Scanlan DJ, Iudicone D, Acinas SG, Garczarek L.

Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):E3365-74. doi: 10.1073/pnas.1524865113. Epub 2016 Jun 2.

11.

Self-regulating genomic island encoding tandem regulators confers chromatic acclimation to marine Synechococcus.

Sanfilippo JE, Nguyen AA, Karty JA, Shukla A, Schluchter WM, Garczarek L, Partensky F, Kehoe DM.

Proc Natl Acad Sci U S A. 2016 May 24;113(21):6077-82. doi: 10.1073/pnas.1600625113. Epub 2016 May 5.

12.

WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data.

Farrant GK, Hoebeke M, Partensky F, Andres G, Corre E, Garczarek L.

BMC Bioinformatics. 2015 Sep 3;16:281. doi: 10.1186/s12859-015-0705-y.

13.

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.

Villar E, Farrant GK, Follows M, Garczarek L, Speich S, Audic S, Bittner L, Blanke B, Brum JR, Brunet C, Casotti R, Chase A, Dolan JR, d'Ortenzio F, Gattuso JP, Grima N, Guidi L, Hill CN, Jahn O, Jamet JL, Le Goff H, Lepoivre C, Malviya S, Pelletier E, Romagnan JB, Roux S, Santini S, Scalco E, Schwenck SM, Tanaka A, Testor P, Vannier T, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Boss E, de Vargas C, Gorsky G, Ogata H, Pesant S, Sullivan MB, Sunagawa S, Wincker P, Karsenti E, Bowler C, Not F, Hingamp P, Iudicone D.

Science. 2015 May 22;348(6237):1261447. doi: 10.1126/science.1261447.

14.

Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus.

Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L.

FEMS Microbiol Ecol. 2014 May;88(2):231-49. doi: 10.1111/1574-6941.12285. Epub 2014 Feb 24.

15.

Connecting thermal physiology and latitudinal niche partitioning in marine Synechococcus.

Pittera J, Humily F, Thorel M, Grulois D, Garczarek L, Six C.

ISME J. 2014 Jun;8(6):1221-36. doi: 10.1038/ismej.2013.228. Epub 2014 Jan 9.

16.

A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus.

Humily F, Partensky F, Six C, Farrant GK, Ratin M, Marie D, Garczarek L.

PLoS One. 2013 Dec 31;8(12):e84459. doi: 10.1371/journal.pone.0084459. eCollection 2013.

17.

CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Bretaudeau A, Coste F, Humily F, Garczarek L, Le Corguillé G, Six C, Ratin M, Collin O, Schluchter WM, Partensky F.

Nucleic Acids Res. 2013 Jan;41(Database issue):D396-401. doi: 10.1093/nar/gks1091. Epub 2012 Nov 21.

18.

Phycoerythrin-specific bilin lyase-isomerase controls blue-green chromatic acclimation in marine Synechococcus.

Shukla A, Biswas A, Blot N, Partensky F, Karty JA, Hammad LA, Garczarek L, Gutu A, Schluchter WM, Kehoe DM.

Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):20136-41. doi: 10.1073/pnas.1211777109. Epub 2012 Nov 16.

19.

Prochlorococcus and Synechococcus have Evolved Different Adaptive Mechanisms to Cope with Light and UV Stress.

Mella-Flores D, Six C, Ratin M, Partensky F, Boutte C, Le Corguillé G, Marie D, Blot N, Gourvil P, Kolowrat C, Garczarek L.

Front Microbiol. 2012 Aug 8;3:285. eCollection 2012.

20.

Microbiology: Arms race in a drop of sea water.

Partensky F, Garczarek L.

Nature. 2011 Jun 29;474(7353):582-3. doi: 10.1038/474582a. No abstract available.

PMID:
21720356
21.

Light history influences the response of the marine cyanobacterium Synechococcus sp. WH7803 to oxidative stress.

Blot N, Mella-Flores D, Six C, Le Corguillé G, Boutte C, Peyrat A, Monnier A, Ratin M, Gourvil P, Campbell DA, Garczarek L.

Plant Physiol. 2011 Aug;156(4):1934-54. doi: 10.1104/pp.111.174714. Epub 2011 Jun 13.

22.

Prochlorococcus: advantages and limits of minimalism.

Partensky F, Garczarek L.

Ann Rev Mar Sci. 2010;2:305-31. Review.

PMID:
21141667
23.

Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511.

Kolowrat C, Partensky F, Mella-Flores D, Le Corguillé G, Boutte C, Blot N, Ratin M, Ferréol M, Lecomte X, Gourvil P, Lennon JF, Kehoe DM, Garczarek L.

BMC Microbiol. 2010 Jul 29;10:204. doi: 10.1186/1471-2180-10-204.

24.

Ecological genomics of marine picocyanobacteria.

Scanlan DJ, Ostrowski M, Mazard S, Dufresne A, Garczarek L, Hess WR, Post AF, Hagemann M, Paulsen I, Partensky F.

Microbiol Mol Biol Rev. 2009 Jun;73(2):249-99. doi: 10.1128/MMBR.00035-08. Review.

25.

Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.

Blot N, Wu XJ, Thomas JC, Zhang J, Garczarek L, Böhm S, Tu JM, Zhou M, Plöscher M, Eichacker L, Partensky F, Scheer H, Zhao KH.

J Biol Chem. 2009 Apr 3;284(14):9290-8. doi: 10.1074/jbc.M809784200. Epub 2009 Jan 31.

26.

Function and evolution of the psbA gene family in marine Synechococcus: Synechococcus sp. WH7803 as a case study.

Garczarek L, Dufresne A, Blot N, Cockshutt AM, Peyrat A, Campbell DA, Joubin L, Six C.

ISME J. 2008 Sep;2(9):937-53. doi: 10.1038/ismej.2008.46. Epub 2008 May 29.

PMID:
18509382
27.

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik BP, Paulsen IT, de Marsac NT, Wincker P, Dossat C, Ferriera S, Johnson J, Post AF, Hess WR, Partensky F.

Genome Biol. 2008;9(5):R90. doi: 10.1186/gb-2008-9-5-r90. Epub 2008 May 28.

28.

Genome streamlining results in loss of robustness of the circadian clock in the marine cyanobacterium Prochlorococcus marinus PCC 9511.

Holtzendorff J, Partensky F, Mella D, Lennon JF, Hess WR, Garczarek L.

J Biol Rhythms. 2008 Jun;23(3):187-99. doi: 10.1177/0748730408316040.

PMID:
18487411
29.

Diel rhythmicity in amino acid uptake by Prochlorococcus.

Mary I, Garczarek L, Tarran GA, Kolowrat C, Terry MJ, Scanlan DJ, Burkill PH, Zubkov MV.

Environ Microbiol. 2008 Aug;10(8):2124-31. doi: 10.1111/j.1462-2920.2008.01633.x. Epub 2008 Apr 22.

PMID:
18430019
30.

Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study.

Six C, Thomas JC, Garczarek L, Ostrowski M, Dufresne A, Blot N, Scanlan DJ, Partensky F.

Genome Biol. 2007;8(12):R259.

31.

Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes.

Zwirglmaier K, Jardillier L, Ostrowski M, Mazard S, Garczarek L, Vaulot D, Not F, Massana R, Ulloa O, Scanlan DJ.

Environ Microbiol. 2008 Jan;10(1):147-61. Epub 2007 Sep 27.

PMID:
17900271
32.

UV-induced phycobilisome dismantling in the marine picocyanobacterium Synechococcus sp. WH8102.

Six C, Joubin L, Partensky F, Holtzendorff J, Garczarek L.

Photosynth Res. 2007 Apr;92(1):75-86. Epub 2007 May 16.

PMID:
17505911
33.

High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer.

Garczarek L, Dufresne A, Rousvoal S, West NJ, Mazard S, Marie D, Claustre H, Raimbault P, Post AF, Scanlan DJ, Partensky F.

FEMS Microbiol Ecol. 2007 May;60(2):189-206. Epub 2007 Mar 28.

34.

Rapid evolutionary divergence of Photosystem I core subunits PsaA and PsaB in the marine prokaryote Prochlorococcus.

van der Staay GW, Moon-van der Staay SY, Garczarek L, Partensky F.

Photosynth Res. 2000;65(2):131-9.

PMID:
16228480
35.

Accelerated evolution associated with genome reduction in a free-living prokaryote.

Dufresne A, Garczarek L, Partensky F.

Genome Biol. 2005;6(2):R14. Epub 2005 Jan 14.

37.

Expression and phylogeny of the multiple antenna genes of the low-light-adapted strain Prochlorococcus marinus SS120 (Oxyphotobacteria).

Garczarek L, van der Staay GW, Hess WR, Le Gall F, Partensky F.

Plant Mol Biol. 2001 Aug;46(6):683-93.

PMID:
11575723
38.

Differential expression of antenna and core genes in Prochlorococcus PCC 9511 (Oxyphotobacteria) grown under a modulated light-dark cycle.

Garczarek L, Partensky F, Irlbacher H, Holtzendorff J, Babin M, Mary I, Thomas JC, Hess WR.

Environ Microbiol. 2001 Mar;3(3):168-75.

PMID:
11321533
39.

Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511.

Holtzendorff J, Partensky F, Jacquet S, Bruyant F, Marie D, Garczarek L, Mary I, Vaulot D, Hess WR.

J Bacteriol. 2001 Feb;183(3):915-20.

40.

Multiplication of antenna genes as a major adaptation to low light in a marine prokaryote.

Garczarek L, Hess WR, Holtzendorff J, van der Staay GW, Partensky F.

Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4098-101.

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