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Items: 1 to 50 of 115

1.

Magnesium Flux Modulates Ribosomes to Increase Bacterial Survival.

Lee DD, Galera-Laporta L, Bialecka-Fornal M, Moon EC, Shen Z, Briggs SP, Garcia-Ojalvo J, Süel GM.

Cell. 2019 Feb 28. pii: S0092-8674(19)30105-9. doi: 10.1016/j.cell.2019.01.042. [Epub ahead of print]

PMID:
30853217
2.

Recurrence-based information processing in gene regulatory networks.

Gabalda-Sagarra M, Carey LB, Garcia-Ojalvo J.

Chaos. 2018 Oct;28(10):106313. doi: 10.1063/1.5039861.

PMID:
30384649
3.

Differentiating resting brain states using ordinal symbolic analysis.

Quintero-Quiroz C, Montesano L, Pons AJ, Torrent MC, García-Ojalvo J, Masoller C.

Chaos. 2018 Oct;28(10):106307. doi: 10.1063/1.5036959.

PMID:
30384619
4.

Self-Amplifying Pulsatile Protein Dynamics without Positive Feedback.

Martinez-Corral R, Raimundez E, Lin Y, Elowitz MB, Garcia-Ojalvo J.

Cell Syst. 2018 Oct 24;7(4):453-462.e1. doi: 10.1016/j.cels.2018.08.012. Epub 2018 Oct 10.

PMID:
30316816
5.

Bistable emergence of oscillations in growing Bacillus subtilis biofilms.

Martinez-Corral R, Liu J, Süel GM, Garcia-Ojalvo J.

Proc Natl Acad Sci U S A. 2018 Sep 4;115(36):E8333-E8340. doi: 10.1073/pnas.1805004115. Epub 2018 Aug 20.

6.

Signal Percolation within a Bacterial Community.

Larkin JW, Zhai X, Kikuchi K, Redford SE, Prindle A, Liu J, Greenfield S, Walczak AM, Garcia-Ojalvo J, Mugler A, Süel GM.

Cell Syst. 2018 Aug 22;7(2):137-145.e3. doi: 10.1016/j.cels.2018.06.005. Epub 2018 Jul 25.

7.

Detection of generalized synchronization using echo state networks.

Ibáñez-Soria D, Garcia-Ojalvo J, Soria-Frisch A, Ruffini G.

Chaos. 2018 Mar;28(3):033118. doi: 10.1063/1.5010285.

PMID:
29604650
8.

Molecular Time Sharing through Dynamic Pulsing in Single Cells.

Park J, Dies M, Lin Y, Hormoz S, Smith-Unna SE, Quinodoz S, Hernández-Jiménez MJ, Garcia-Ojalvo J, Locke JCW, Elowitz MB.

Cell Syst. 2018 Feb 28;6(2):216-229.e15. doi: 10.1016/j.cels.2018.01.011. Epub 2018 Feb 14.

9.

Collective excitability in a mesoscopic neuronal model of epileptic activity.

Jedynak M, Pons AJ, Garcia-Ojalvo J.

Phys Rev E. 2018 Jan;97(1-1):012204. doi: 10.1103/PhysRevE.97.012204.

PMID:
29448445
10.

Dynamics and heterogeneity of brain damage in multiple sclerosis.

Kotelnikova E, Kiani NA, Abad E, Martinez-Lapiscina EH, Andorra M, Zubizarreta I, Pulido-Valdeolivas I, Pertsovskaya I, Alexopoulos LG, Olsson T, Martin R, Paul F, Tegnér J, Garcia-Ojalvo J, Villoslada P.

PLoS Comput Biol. 2017 Oct 26;13(10):e1005757. doi: 10.1371/journal.pcbi.1005757. eCollection 2017 Oct.

11.

Impact of Zygosity on Bimodal Phenotype Distributions.

Holst-Hansen T, Abad E, Muntasell A, López-Botet M, Jensen MH, Trusina A, Garcia-Ojalvo J.

Biophys J. 2017 Jul 11;113(1):148-156. doi: 10.1016/j.bpj.2017.05.010.

12.

Cortical Spike Synchrony as a Measure of Input Familiarity.

Korndörfer C, Ullner E, García-Ojalvo J, Pipa G.

Neural Comput. 2017 Sep;29(9):2491-2510. doi: 10.1162/NECO_a_00987. Epub 2017 Jun 9.

PMID:
28599117
13.

Coupling between distant biofilms and emergence of nutrient time-sharing.

Liu J, Martinez-Corral R, Prindle A, Lee DD, Larkin J, Gabalda-Sagarra M, Garcia-Ojalvo J, Süel GM.

Science. 2017 May 12;356(6338):638-642. doi: 10.1126/science.aah4204. Epub 2017 Apr 6.

14.

Consistency of heterogeneous synchronization patterns in complex weighted networks.

Malagarriga D, Villa AE, Garcia-Ojalvo J, Pons AJ.

Chaos. 2017 Mar;27(3):031102. doi: 10.1063/1.4977972.

PMID:
28364768
15.

Diversity of fate outcomes in cell pairs under lateral inhibition.

Guisoni N, Martinez-Corral R, Garcia-Ojalvo J, de Navascués J.

Development. 2017 Apr 1;144(7):1177-1186. doi: 10.1242/dev.137950. Epub 2017 Feb 7.

16.

Cell Lineage Trees Bear Fruit.

Garcia-Ojalvo J.

Cell Syst. 2016 Dec 21;3(6):511-513. doi: 10.1016/j.cels.2016.12.006.

17.

Temporally correlated fluctuations drive epileptiform dynamics.

Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M.

Neuroimage. 2017 Feb 1;146:188-196. doi: 10.1016/j.neuroimage.2016.11.034. Epub 2016 Nov 16.

18.

Transition between Functional Regimes in an Integrate-And-Fire Network Model of the Thalamus.

Barardi A, Garcia-Ojalvo J, Mazzoni A.

PLoS One. 2016 Sep 6;11(9):e0161934. doi: 10.1371/journal.pone.0161934. eCollection 2016.

19.

Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.

Cvijovic M, Höfer T, Aćimović J, Alberghina L, Almaas E, Besozzi D, Blomberg A, Bretschneider T, Cascante M, Collin O, de Atauri P, Depner C, Dickinson R, Dobrzynski M, Fleck C, Garcia-Ojalvo J, Gonze D, Hahn J, Hess HM, Hollmann S, Krantz M, Kummer U, Lundh T, Martial G, Dos Santos VM, Mauer-Oberthür A, Regierer B, Skene B, Stalidzans E, Stelling J, Teusink B, Workman CT, Hohmann S.

NPJ Syst Biol Appl. 2016 May 26;2:16011. doi: 10.1038/npjsba.2016.11. eCollection 2016.

20.

Biological Insights from Synthetic Biology.

Garcia-Ojalvo J, Khalil AS, McCarthy J.

Integr Biol (Camb). 2016 Apr 18;8(4):380-2. doi: 10.1039/c6ib90013e. Epub 2016 Apr 11. No abstract available.

PMID:
27064018
21.

Overexpression of Dyrk1A, a Down Syndrome Candidate, Decreases Excitability and Impairs Gamma Oscillations in the Prefrontal Cortex.

Ruiz-Mejias M, Martinez de Lagran M, Mattia M, Castano-Prat P, Perez-Mendez L, Ciria-Suarez L, Gener T, Sancristobal B, García-Ojalvo J, Gruart A, Delgado-García JM, Sanchez-Vives MV, Dierssen M.

J Neurosci. 2016 Mar 30;36(13):3648-59. doi: 10.1523/JNEUROSCI.2517-15.2016.

22.

Mutual regulation causes co-entrainment between a synthetic oscillator and the bacterial cell cycle.

Dies M, Galera-Laporta L, Garcia-Ojalvo J.

Integr Biol (Camb). 2016 Apr 18;8(4):533-41. doi: 10.1039/c5ib00262a. Epub 2015 Dec 17.

PMID:
26674636
23.

Ion channels enable electrical communication in bacterial communities.

Prindle A, Liu J, Asally M, Ly S, Garcia-Ojalvo J, Süel GM.

Nature. 2015 Nov 5;527(7576):59-63. doi: 10.1038/nature15709. Epub 2015 Oct 21.

24.

The analysis of semantic networks in multiple sclerosis identifies preferential damage of long-range connectivity.

Abad E, Sepulcre J, Martinez-Lapiscina EH, Zubizarreta I, Garcia-Ojalvo J, Villoslada P.

Mult Scler Relat Disord. 2015 Sep;4(5):387-394. doi: 10.1016/j.msard.2015.07.002. Epub 2015 Jul 8.

PMID:
26346784
25.

Synchronization-based computation through networks of coupled oscillators.

Malagarriga D, García-Vellisca MA, Villa AE, Buldú JM, García-Ojalvo J, Pons AJ.

Front Comput Neurosci. 2015 Aug 4;9:97. doi: 10.3389/fncom.2015.00097. eCollection 2015.

26.

Metabolic co-dependence gives rise to collective oscillations within biofilms.

Liu J, Prindle A, Humphries J, Gabalda-Sagarra M, Asally M, Lee DY, Ly S, Garcia-Ojalvo J, Süel GM.

Nature. 2015 Jul 30;523(7562):550-4. doi: 10.1038/nature14660. Epub 2015 Jul 22.

27.

Structural determinants of criticality in biological networks.

Valverde S, Ohse S, Turalska M, West BJ, Garcia-Ojalvo J.

Front Physiol. 2015 May 8;6:127. doi: 10.3389/fphys.2015.00127. eCollection 2015. Review.

28.

Cross-frequency transfer in a stochastically driven mesoscopic neuronal model.

Jedynak M, Pons AJ, Garcia-Ojalvo J.

Front Comput Neurosci. 2015 Feb 16;9:14. doi: 10.3389/fncom.2015.00014. eCollection 2015.

29.

Mesoscopic segregation of excitation and inhibition in a brain network model.

Malagarriga D, Villa AE, Garcia-Ojalvo J, Pons AJ.

PLoS Comput Biol. 2015 Feb 11;11(2):e1004007. doi: 10.1371/journal.pcbi.1004007. eCollection 2015 Feb.

30.

Probing scale interaction in brain dynamics through synchronization.

Barardi A, Malagarriga D, Sancristobal B, Garcia-Ojalvo J, Pons AJ.

Philos Trans R Soc Lond B Biol Sci. 2014 Oct 5;369(1653). pii: 20130533. doi: 10.1098/rstb.2013.0533.

31.

Phase-coherence transitions and communication in the gamma range between delay-coupled neuronal populations.

Barardi A, Sancristóbal B, Garcia-Ojalvo J.

PLoS Comput Biol. 2014 Jul 24;10(7):e1003723. doi: 10.1371/journal.pcbi.1003723. eCollection 2014 Jul.

32.

Role of frequency mismatch in neuronal communication through coherence.

Sancristóbal B, Vicente R, Garcia-Ojalvo J.

J Comput Neurosci. 2014 Oct;37(2):193-208. doi: 10.1007/s10827-014-0495-7. Epub 2014 Feb 12.

PMID:
24519733
33.

A competitive protein interaction network buffers Oct4-mediated differentiation to promote pluripotency in embryonic stem cells.

Muñoz Descalzo S, Rué P, Faunes F, Hayward P, Jakt LM, Balayo T, Garcia-Ojalvo J, Martinez Arias A.

Mol Syst Biol. 2013 Oct 8;9:694. doi: 10.1038/msb.2013.49.

34.

Transient oscillatory dynamics of interferon beta signaling in macrophages.

Pertsovskaya I, Abad E, Domedel-Puig N, Garcia-Ojalvo J, Villoslada P.

BMC Syst Biol. 2013 Jul 9;7:59. doi: 10.1186/1752-0509-7-59.

35.

Dynamic cross-regulation of antigen-specific effector and regulatory T cell subpopulations and microglia in brain autoimmunity.

Martinez-Pasamar S, Abad E, Moreno B, Velez de Mendizabal N, Martinez-Forero I, Garcia-Ojalvo J, Villoslada P.

BMC Syst Biol. 2013 Apr 26;7:34. doi: 10.1186/1752-0509-7-34.

36.

Circuit-level input integration in bacterial gene regulation.

Espinar L, Dies M, Cagatay T, Süel GM, Garcia-Ojalvo J.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):7091-6. doi: 10.1073/pnas.1216091110. Epub 2013 Apr 9.

37.

Emergent bimodal firing patterns implement different encoding strategies during gamma-band oscillations.

Sancristóbal B, Vicente R, Sancho JM, Garcia-Ojalvo J.

Front Comput Neurosci. 2013 Mar 26;7:18. doi: 10.3389/fncom.2013.00018. eCollection 2013.

38.

Modeling gene expression in time and space.

Rué P, Garcia-Ojalvo J.

Annu Rev Biophys. 2013;42:605-27. doi: 10.1146/annurev-biophys-083012-130335. Review.

PMID:
23527779
39.

Towards a statistical mechanics of cell fate decisions.

Garcia-Ojalvo J, Martinez Arias A.

Curr Opin Genet Dev. 2012 Dec;22(6):619-26. doi: 10.1016/j.gde.2012.10.004. Epub 2012 Nov 28. Review.

PMID:
23200114
40.

Localized cell death focuses mechanical forces during 3D patterning in a biofilm.

Asally M, Kittisopikul M, Rué P, Du Y, Hu Z, Çağatay T, Robinson AB, Lu H, Garcia-Ojalvo J, Süel GM.

Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18891-6. doi: 10.1073/pnas.1212429109. Epub 2012 Sep 24.

41.

Correlations between the levels of Oct4 and Nanog as a signature for naïve pluripotency in mouse embryonic stem cells.

Muñoz Descalzo S, Rué P, Garcia-Ojalvo J, Martinez Arias A.

Stem Cells. 2012 Dec;30(12):2683-91. doi: 10.1002/stem.1230.

42.

Integration of cellular signals in chattering environments.

Rué P, Domedel-Puig N, Garcia-Ojalvo J, Pons AJ.

Prog Biophys Mol Biol. 2012 Sep;110(1):106-12. doi: 10.1016/j.pbiomolbio.2012.05.003. Epub 2012 May 11.

PMID:
22584015
43.

Zero-lag synchronization and bubbling in delay-coupled lasers.

Tiana-Alsina J, Hicke K, Porte X, Soriano MC, Torrent MC, Garcia-Ojalvo J, Fischer I.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Feb;85(2 Pt 2):026209. Epub 2012 Feb 21.

PMID:
22463301
44.

Dual-lag synchronization between coupled chaotic lasers due to path-delay interference.

Tiana-Alsina J, Garcia-Lopez JH, Torrent MC, Garcia-Ojalvo J.

Chaos. 2011 Dec;21(4):043102. doi: 10.1063/1.3644392.

PMID:
22225339
45.

Information routing driven by background chatter in a signaling network.

Domedel-Puig N, Rué P, Pons AJ, García-Ojalvo J.

PLoS Comput Biol. 2011 Dec;7(12):e1002297. doi: 10.1371/journal.pcbi.1002297. Epub 2011 Dec 8.

46.

Temporal competition between differentiation programs determines cell fate choice.

Kuchina A, Espinar L, Çağatay T, Balbin AO, Zhang F, Alvarado A, Garcia-Ojalvo J, Süel GM.

Mol Syst Biol. 2011 Dec 6;7:557. doi: 10.1038/msb.2011.88.

47.

Reversible and noisy progression towards a commitment point enables adaptable and reliable cellular decision-making.

Kuchina A, Espinar L, Garcia-Ojalvo J, Süel GM.

PLoS Comput Biol. 2011 Nov;7(11):e1002273. doi: 10.1371/journal.pcbi.1002273. Epub 2011 Nov 10.

48.

Dynamical consequences of bandpass feedback loops in a bacterial phosphorelay.

Sen S, Garcia-Ojalvo J, Elowitz MB.

PLoS One. 2011;6(9):e25102. doi: 10.1371/journal.pone.0025102. Epub 2011 Sep 29.

49.

Language organization and temporal correlations in the spiking activity of an excitable laser: experiments and model comparison.

Rubido N, Tiana-Alsina J, Torrent MC, Garcia-Ojalvo J, Masoller C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug;84(2 Pt 2):026202. Epub 2011 Aug 9.

PMID:
21929076
50.

Optimizing periodicity and polymodality in noise-induced genetic oscillators.

Rué P, Süel GM, Garcia-Ojalvo J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jun;83(6 Pt 1):061904. Epub 2011 Jun 6.

PMID:
21797400

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