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Items: 44

1.

Virulotyping of Salmonella enterica serovar Typhi isolates from Pakistan: Absence of complete SPI-10 in Vi negative isolates.

Liaquat S, Sarwar Y, Ali A, Haque A, Farooq M, Martinez-Ballesteros I, Laorden L, Garaizar J, Bikandi J.

PLoS Negl Trop Dis. 2018 Nov 30;12(11):e0006839. doi: 10.1371/journal.pntd.0006839. eCollection 2018 Nov.

2.

Antimicrobial susceptibility and MLVA analysis of S. Typhimurium strains isolated from human and poultry samples in Tunisia.

Kalai W, Martinez I, Bikandi J, Messadi L, Khazri I, Souissi N, Saidani M, Slim AF, Boutiba-Ben Boubaker I, Garaizar J.

J Infect Dev Ctries. 2018 May 31;12(5):313-320. doi: 10.3855/jidc.10089.

3.

Relationship between Salmonella infection, shedding and serology in fattening pigs in low-moderate prevalence areas.

San Román B, Garrido V, Sánchez S, Martínez-Ballesteros I, Garaizar J, Mainar-Jaime RC, Migura-Garcia L, Grilló MJ.

Zoonoses Public Health. 2018 Aug;65(5):481-489. doi: 10.1111/zph.12453. Epub 2018 Apr 27.

PMID:
29700976
4.

Draft Genome Sequence of an Oceanobacillus sp. Strain Isolated from Soil in a Burial Crypt.

Martínez-Ballesteros I, Arizaga Y, Bikandi J, Garaizar J, Ganau G, Paglietti B, Murgia M, Deligios M, Rubino S.

Genome Announc. 2016 Jul 28;4(4). pii: e00701-16. doi: 10.1128/genomeA.00701-16.

5.

Aspergillus fumigatus transcriptome response to a higher temperature during the earliest steps of germination monitored using a new customized expression microarray.

Sueiro-Olivares M, Fernandez-Molina JV, Abad-Diaz-de-Cerio A, Gorospe E, Pascual E, Guruceaga X, Ramirez-Garcia A, Garaizar J, Hernando FL, Margareto J, Rementeria A.

Microbiology. 2015 Mar;161(Pt 3):490-502. doi: 10.1099/mic.0.000021. Epub 2014 Dec 23.

PMID:
25536999
6.

Rapid and specific detection of section Fumigati and Aspergillus fumigatus in human samples using a new multiplex real-time PCR.

Fernandez-Molina JV, Abad-Diaz-de-Cerio A, Sueiro-Olivares M, Pellon A, Ramirez-Garcia A, Garaizar J, Pemán J, Hernando FL, Rementeria A.

Diagn Microbiol Infect Dis. 2014 Oct;80(2):111-8. doi: 10.1016/j.diagmicrobio.2014.06.003. Epub 2014 Jun 19.

PMID:
25063549
7.

Reprint of "Identification of staphylococcal species based on variations in protein sequences (mass spectrometry) and DNA sequence (sodA microarray)".

Kooken J, Fox K, Fox A, Altomare D, Creek K, Wunschel D, Pajares-Merino S, Martínez-Ballesteros I, Garaizar J, Oyarzabal O, Samadpour M.

Mol Cell Probes. 2014 Apr-Jun;28(2-3):73-82. doi: 10.1016/j.mcp.2014.01.003. Epub 2014 Jan 29.

PMID:
24486297
8.

Online exercise for the design and simulation of PCR and PCR-RFLP experiments.

San Millán RM, Martínez-Ballesteros I, Rementeria A, Garaizar J, Bikandi J.

BMC Res Notes. 2013 Dec 5;6:513. doi: 10.1186/1756-0500-6-513.

9.

Identification of staphylococcal species based on variations in protein sequences (mass spectrometry) and DNA sequence (sodA microarray).

Kooken J, Fox K, Fox A, Altomare D, Creek K, Wunschel D, Pajares-Merino S, Martínez-Ballesteros I, Garaizar J, Oyarzabal O, Samadpour M.

Mol Cell Probes. 2014 Feb;28(1):41-50. doi: 10.1016/j.mcp.2013.10.003. Epub 2013 Oct 30. Corrected and republished in: Mol Cell Probes. 2014 Apr-Jun;28(2-3):73-82.

PMID:
24184563
10.

The aspHS gene as a new target for detecting Aspergillus fumigatus during infections by quantitative real-time PCR.

Abad-Diaz-De-Cerio A, Fernandez-Molina JV, Ramirez-Garcia A, Sendino J, Hernando FL, Pemán J, Garaizar J, Rementeria A.

Med Mycol. 2013 Jul;51(5):545-54. doi: 10.3109/13693786.2012.756989. Epub 2013 Jan 22.

PMID:
23336696
11.

Intra- and inter-laboratory evaluation of an improved multiplex-PCR method for detection and typing of Salmonella.

Martinez-Ballesteros I, Paglietti B, Rementeria A, Laorden L, Garcia-Ricobaraza M, Bikandi J, Rubino S, Garaizar J.

J Infect Dev Ctries. 2012 May 14;6(5):443-51.

12.

What makes Aspergillus fumigatus a successful pathogen? Genes and molecules involved in invasive aspergillosis.

Abad A, Fernández-Molina JV, Bikandi J, Ramírez A, Margareto J, Sendino J, Hernando FL, Pontón J, Garaizar J, Rementeria A.

Rev Iberoam Micol. 2010 Oct-Dec;27(4):155-82. doi: 10.1016/j.riam.2010.10.003. Epub 2010 Oct 23. Review.

13.

Genetic evolution of the Spanish multidrug-resistant Salmonella enterica 4,5,12:i:- monophasic variant.

Laorden L, Herrera-León S, Martínez I, Sanchez A, Kromidas L, Bikandi J, Rementeria A, Echeita A, Garaizar J.

J Clin Microbiol. 2010 Dec;48(12):4563-6. doi: 10.1128/JCM.00337-10. Epub 2010 Oct 13.

14.

Validation of double digest selective label database for sequenced prokaryotic genomes.

Terletskiy V, Tyshchenko V, Martinez-Ballesteros I, Garaizar J, Bikandi J.

Bioinformatics. 2010 Feb 1;26(3):417-8. doi: 10.1093/bioinformatics/btp675. Epub 2009 Dec 8.

PMID:
19996164
15.

Characterization of a monoclonal antibody directed against Salmonella enterica serovar Typhimurium and serovar [4,5,12:i:-].

Rementeria A, Vivanco AB, Ramirez A, Hernando FL, Bikandi J, Herrera-León S, Echeita A, Garaizar J.

Appl Environ Microbiol. 2009 Mar;75(5):1345-54. doi: 10.1128/AEM.01597-08. Epub 2009 Jan 5.

16.

Evaluation of molecular typing methods in characterizing a European collection of epidemic methicillin-resistant Staphylococcus aureus strains: the HARMONY collection.

Cookson BD, Robinson DA, Monk AB, Murchan S, Deplano A, de Ryck R, Struelens MJ, Scheel C, Fussing V, Salmenlinna S, Vuopio-Varkila J, Cuny C, Witte W, Tassios PT, Legakis NJ, van Leeuwen W, van Belkum A, Vindel A, Garaizar J, Haeggman S, Olsson-Liljequist B, Ransjo U, Muller-Premru M, Hryniewicz W, Rossney A, O'Connell B, Short BD, Thomas J, O'Hanlon S, Enright MC.

J Clin Microbiol. 2007 Jun;45(6):1830-7. Epub 2007 Apr 11.

17.

[Selection and implantation of yeast strains of genus Saccharomyces at a winery regulated by Appellation Contrôlée "Chacolí de Vizcaya/Bizkaiko Txakolina"].

Rementeria A, Rodríguez JA, Calvo E, Amenabar R, Muguruza JR, Vivanco AB, Garaizar J, Sevilla MJ.

Rev Iberoam Micol. 2006 Dec;23(4):224-32. Spanish.

18.
19.

Kefir: a symbiotic yeasts-bacteria community with alleged healthy capabilities.

Lopitz-Otsoa F, Rementeria A, Elguezabal N, Garaizar J.

Rev Iberoam Micol. 2006 Jun;23(2):67-74.

20.

DNA microarray technology: a new tool for the epidemiological typing of bacterial pathogens?

Garaizar J, Rementeria A, Porwollik S.

FEMS Immunol Med Microbiol. 2006 Jul;47(2):178-89. Review.

21.

In silico simulation of fingerprinting techniques based on double endonuclease digestion of genomic DNA.

San Millán R, Garaizar J, Bikandi J.

In Silico Biol. 2005;5(3):341-6. Epub 2005 Apr 11.

PMID:
16153186
22.

Clonal spread of pediatric isolates of ciprofloxacin-resistant, emm type 6 Streptococcus pyogenes.

Alonso R, Mateo E, Galimand M, Garaizar J, Courvalin P, Cisterna R.

J Clin Microbiol. 2005 May;43(5):2492-3.

23.

Genes and molecules involved in Aspergillus fumigatus virulence.

Rementeria A, López-Molina N, Ludwig A, Vivanco AB, Bikandi J, Pontón J, Garaizar J.

Rev Iberoam Micol. 2005 Mar;22(1):1-23. Review.

24.

[Utility of random amplified polymorphic DNA in the discrimination between Candida albicans and Candida dubliniensis].

Quindós G, Alonso-Vargas R, Garaizar J, Pontón J.

Rev Iberoam Micol. 2000 Mar;17(1):10-3. Spanish.

25.

Multiplex PCR for distinguishing the most common phase-1 flagellar antigens of Salmonella spp.

Herrera-León S, McQuiston JR, Usera MA, Fields PI, Garaizar J, Echeita MA.

J Clin Microbiol. 2004 Jun;42(6):2581-6.

26.

Typing fungal isolates: molecular methods and computerized analysis.

Rementeria A, Vivanco AB, Cadaval A, Ruesga MT, Brena S, Pontón J, Quindós G, Garaizar J.

Methods Mol Biol. 2004;268:117-25.

PMID:
15156023
27.

Molecular genotyping methods and computerized analysis for the study of Salmonella enterica.

Vivanco AB, Alvarez J, Laconcha I, López-Molina N, Rementeria A, Garaizar J.

Methods Mol Biol. 2004;268:49-58.

PMID:
15156017
28.

Development of a multiplex PCR technique for detection and epidemiological typing of salmonella in human clinical samples.

Alvarez J, Sota M, Vivanco AB, Perales I, Cisterna R, Rementeria A, Garaizar J.

J Clin Microbiol. 2004 Apr;42(4):1734-8.

29.

In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction.

Bikandi J, San Millán R, Rementeria A, Garaizar J.

Bioinformatics. 2004 Mar 22;20(5):798-9. Epub 2004 Jan 29.

PMID:
14752001
30.

Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays.

Alvarez J, Porwollik S, Laconcha I, Gisakis V, Vivanco AB, Gonzalez I, Echenagusia S, Zabala N, Blackmer F, McClelland M, Rementeria A, Garaizar J.

Appl Environ Microbiol. 2003 Dec;69(12):7531-4.

31.

Harmonization of pulsed-field gel electrophoresis protocols for epidemiological typing of strains of methicillin-resistant Staphylococcus aureus: a single approach developed by consensus in 10 European laboratories and its application for tracing the spread of related strains.

Murchan S, Kaufmann ME, Deplano A, de Ryck R, Struelens M, Zinn CE, Fussing V, Salmenlinna S, Vuopio-Varkila J, El Solh N, Cuny C, Witte W, Tassios PT, Legakis N, van Leeuwen W, van Belkum A, Vindel A, Laconcha I, Garaizar J, Haeggman S, Olsson-Liljequist B, Ransjo U, Coombes G, Cookson B.

J Clin Microbiol. 2003 Apr;41(4):1574-85.

32.

DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar.

Garaizar J, Porwollik S, Echeita A, Rementeria A, Herrera S, Wong RM, Frye J, Usera MA, McClelland M.

J Clin Microbiol. 2002 Jun;40(6):2074-8.

33.

Multiplex PCR-based detection and identification of the most common Salmonella second-phase flagellar antigens.

Echeita MA, Herrera S, Garaizar J, Usera MA.

Res Microbiol. 2002 Mar;153(2):107-13.

PMID:
11900263
34.

Comparative evaluation of three commercial software packages for analysis of DNA polymorphism patterns.

Rementeria A, Gallego L, Quindós G, Garaizar J.

Clin Microbiol Infect. 2001 Jun;7(6):331-6.

35.

Suitability of PCR fingerprinting, infrequent-restriction-site PCR, and pulsed-field gel electrophoresis, combined with computerized gel analysis, in library typing of Salmonella enterica serovar enteritidis.

Garaizar J, López-Molina N, Laconcha I, Lau Baggesen D, Rementeria A, Vivanco A, Audicana A, Perales I.

Appl Environ Microbiol. 2000 Dec;66(12):5273-81.

36.
37.

Typing of Salmonella enteritidis of different phage types of PCR fingerprinting.

López-Molina N, Laconcha I, Rementería A, Audicana A, Perales I, Garaizar J.

J Appl Microbiol. 1998 May;84(5):877-82.

38.

Phage typing combined with pulsed-field gel electrophoresis and random amplified polymorphic DNA increases discrimination in the epidemiological analysis of Salmonella enteritidis strains.

Laconcha I, López-Molina N, Rementeria A, Audicana A, Perales I, Garaizar J.

Int J Food Microbiol. 1998 Mar 3;40(1-2):27-34.

PMID:
9600607
39.

Characterization of Scedosporium prolificans clinical isolates by randomly amplified polymorphic DNA analysis.

San Millán R, Quindós G, Garaizar J, Salesa R, Guarro J, Pontón J.

J Clin Microbiol. 1997 Sep;35(9):2270-4.

40.

Computerized restriction endonuclease analysis compared with O-serotype and phage type in the epidemiologic fingerprinting of Pseudomonas aeruginosa strains.

Garaizar J, Latorre M, López-Molina N, Laconcha I, Alberdi L, Rementeria A, Audicana A, Uliarte R, Cisterna R.

Clin Microbiol Infect. 1997 Apr;3(2):222-228.

41.

Comparison of outbreak and nonoutbreak Acinetobacter baumannii strains by genotypic and phenotypic methods.

Dijkshoorn L, Aucken H, Gerner-Smidt P, Janssen P, Kaufmann ME, Garaizar J, Ursing J, Pitt TL.

J Clin Microbiol. 1996 Jun;34(6):1519-25.

42.

[Antimicrobial resistance in strains of Salmonella enterica isolated in the Hospital de Basurto (Bilbao) from 1987 to 1990].

Fernández de Aránguiz A, Alonso R, Colom K, Gallego L, Umaran A, Garaizar J, Cisterna R.

Enferm Infecc Microbiol Clin. 1992 Feb;10(2):89-96. Spanish.

PMID:
1643144
43.
44.

[Transfer of plasmid beta-lactamases in enterobacteria].

Umaran A, Garaizar J, Gallego L, Colom K, Cisterna R.

Enferm Infecc Microbiol Clin. 1989 Apr;7(4):189-94. Spanish.

PMID:
2490696

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