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Items: 31

1.

Draft Genome Sequences of 12 Isolates from 3 Fusarium Species Recovered from Moldy Peanuts.

Gebru ST, Mammel MK, Gangiredla J, Tournas VH, Lampel KA, Tartera C.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e01642-18. doi: 10.1128/MRA.01642-18.

2.

DNA Microarray-Based Genomic Characterization of the Pathotypes of Escherichia coli O26, O45, O103, O111, and O145 Isolated from Feces of Feedlot Cattle .

Shridhar PB, Patel IR, Gangiredla J, Noll LW, Shi X, Bai J, Nagaraja TG.

J Food Prot. 2019 Mar;82(3):395-404. doi: 10.4315/0362-028X.JFP-18-393.

PMID:
30794460
3.

Draft Genome Sequences of 72 Isolates from All Four Species of Shigella.

Gangiredla J, Mammel MK, Lacher DW, Tartera C, Jackson SA, Patel IR, Elkins CA, Mukherjee A.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01399-18. doi: 10.1128/MRA.01399-18. eCollection 2018 Nov.

4.

Draft Genome Sequences of the Escherichia coli Reference (ECOR) Collection.

Patel IR, Gangiredla J, Mammel MK, Lampel KA, Elkins CA, Lacher DW.

Microbiol Resour Announc. 2018 Oct 11;7(14). pii: e01133-18. doi: 10.1128/MRA.01133-18. eCollection 2018 Oct.

5.

Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains.

Jang H, Woo J, Lee Y, Negrete F, Finkelstein S, Chase HR, Addy N, Ewing L, Beaubrun JJG, Patel I, Gangiredla J, Eshwar A, Jaradat ZW, Seo K, Shabarinath S, Fanning S, Stephan R, Lehner A, Tall BD, Gopinath GR.

Stand Genomic Sci. 2018 Nov 29;13:35. doi: 10.1186/s40793-018-0339-6. eCollection 2018.

6.

Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Bagi L, Baranzoni GM, Fratamico PM, Roberts EL, DebROY C, Lindsey RL, V Stoneburg D, Martin H, Smith P, Strockbine NA, Elkins CA, Scheutz F, Feng PCH.

J Food Prot. 2018 Aug;81(8):1275-1282. doi: 10.4315/0362-028X.JFP-18-052.

7.

Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements.

Gangiredla J, Barnaba TJ, Mammel MK, Lacher DW, Elkins CA, Lampel KA, Whitehouse CA, Tartera C.

Genome Announc. 2018 Jun 28;6(26). pii: e00621-18. doi: 10.1128/genomeA.00621-18.

8.

Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products.

Barnaba TJ, Gangiredla J, Mammel MK, Lacher DW, Elkins CA, Lampel KA, Whitehouse CA, Tartera C.

Genome Announc. 2018 Jun 28;6(26). pii: e00610-18. doi: 10.1128/genomeA.00610-18.

9.

Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp.

Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW.

Genome Announc. 2018 May 3;6(18). pii: e00271-18. doi: 10.1128/genomeA.00271-18.

10.

DNA microarray-based assessment of virulence potential of Shiga toxin gene-carrying Escherichia coli O104:H7 isolated from feedlot cattle feces.

Shridhar PB, Patel IR, Gangiredla J, Noll LW, Shi X, Bai J, Elkins CA, Strockbine N, Nagaraja TG.

PLoS One. 2018 Apr 30;13(4):e0196490. doi: 10.1371/journal.pone.0196490. eCollection 2018.

11.

Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples.

Gopinath GR, Chase HR, Gangiredla J, Eshwar A, Jang H, Patel I, Negrete F, Finkelstein S, Park E, Chung T, Yoo Y, Woo J, Lee Y, Park J, Choi H, Jeong S, Jun S, Kim M, Lee C, Jeong H, Fanning S, Stephan R, Iversen C, Reich F, Klein G, Lehner A, Tall BD.

Gut Pathog. 2018 Mar 10;10:11. doi: 10.1186/s13099-018-0238-9. eCollection 2018.

12.

Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing.

Shridhar PB, Patel IR, Gangiredla J, Noll LW, Shi X, Bai J, Elkins CA, Strockbine NA, Nagaraja TG.

Front Microbiol. 2018 Mar 1;9:341. doi: 10.3389/fmicb.2018.00341. eCollection 2018.

13.

Species-Wide Collection of Escherichia coli Isolates for Examination of Genomic Diversity.

Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW.

Genome Announc. 2017 Dec 14;5(50). pii: e01321-17. doi: 10.1128/genomeA.01321-17.

14.

Draft Genome Sequences of Escherichia coli O104 Strains of Bovine and Human Origin.

Shridhar PB, Patel IR, Gangiredla J, Mammel MK, Noll L, Shi X, Bai J, Elkins CA, Strockbine N, Nagaraja TG.

Genome Announc. 2017 Aug 17;5(33). pii: e00630-17. doi: 10.1128/genomeA.00630-17.

15.

Draft Genome Sequence of Cronobacter sakazakii GP1999, Sequence Type 145, an Epiphytic Isolate Obtained from the Tomato's Rhizoplane/Rhizosphere Continuum.

Chase HR, Eberl L, Stephan R, Jeong H, Lee C, Finkelstein S, Negrete F, Gangiredla J, Patel I, Tall BD, Gopinath GR, Lehner A.

Genome Announc. 2017 Aug 3;5(31). pii: e00723-17. doi: 10.1128/genomeA.00723-17.

16.

Comparative Genomic Characterization of the Highly Persistent and Potentially Virulent Cronobacter sakazakii ST83, CC65 Strain H322 and Other ST83 Strains.

Chase HR, Gopinath GR, Eshwar AK, Stoller A, Fricker-Feer C, Gangiredla J, Patel IR, Cinar HN, Jeong H, Lee C, Negrete F, Finkelstein S, Stephan R, Tall BD, Lehner A.

Front Microbiol. 2017 Jun 26;8:1136. doi: 10.3389/fmicb.2017.01136. eCollection 2017.

17.

Use of a Pan-Genomic DNA Microarray in Determination of the Phylogenetic Relatedness among Cronobacter spp. and Its Use as a Data Mining Tool to Understand Cronobacter Biology.

Tall BD, Gangiredla J, Grim CJ, Patel IR, Jackson SA, Mammel MK, Kothary MH, Sathyamoorthy V, Carter L, Fanning S, Iversen C, Pagotto F, Stephan R, Lehner A, Farber J, Yan QQ, Gopinath GR.

Microarrays (Basel). 2017 Mar 4;6(1). pii: E6. doi: 10.3390/microarrays6010006. Review.

18.

Analysis and Characterization of Proteins Associated with Outer Membrane Vesicles Secreted by Cronobacter spp.

Kothary MH, Gopinath GR, Gangiredla J, Rallabhandi PV, Harrison LM, Yan QQ, Chase HR, Lee B, Park E, Yoo Y, Chung T, Finkelstein SB, Negrete FJ, Patel IR, Carter L, Sathyamoorthy V, Fanning S, Tall BD.

Front Microbiol. 2017 Feb 9;8:134. doi: 10.3389/fmicb.2017.00134. eCollection 2017.

19.

Use of the Escherichia coli Identification Microarray for Characterizing the Health Risks of Shiga Toxin-Producing Escherichia coli Isolated from Foods.

Lacher DW, Gangiredla J, Patel I, Elkins CA, Feng PC.

J Food Prot. 2016 Oct;79(10):1656-1662. doi: 10.4315/0362-028X.JFP-16-176.

PMID:
28221838
20.

Genome Sequences of Malonate-Positive Cronobacter sakazakii Serogroup O:2, Sequence Type 64 Strains CDC 1121-73 and GK1025, Isolated from Human Bronchial Wash and a Powdered Infant Formula Manufacturing Plant.

Chase HR, Gopinath GR, Gangiredla J, Patel IR, Kothary MH, Carter L, Sathyamoorthy V, Lee B, Park E, Yoo YJ, Chung TJ, Choi H, Jun S, Park J, Jeong S, Kim M, Reich F, Klein G, Tall BD.

Genome Announc. 2016 Nov 10;4(6). pii: e01072-16. doi: 10.1128/genomeA.01072-16.

21.

Linking Genomo- and Pathotype: Exploiting the Zebrafish Embryo Model to Investigate the Divergent Virulence Potential among Cronobacter spp.

Eshwar AK, Tall BD, Gangiredla J, Gopinath GR, Patel IR, Neuhauss SC, Stephan R, Lehner A.

PLoS One. 2016 Jun 29;11(6):e0158428. doi: 10.1371/journal.pone.0158428. eCollection 2016.

22.

Characterization of Shiga Toxin Subtypes and Virulence Genes in Porcine Shiga Toxin-Producing Escherichia coli.

Baranzoni GM, Fratamico PM, Gangiredla J, Patel I, Bagi LK, Delannoy S, Fach P, Boccia F, Anastasio A, Pepe T.

Front Microbiol. 2016 Apr 21;7:574. doi: 10.3389/fmicb.2016.00574. eCollection 2016.

23.

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Jackson SA, Lampel KA, Elkins CA.

Appl Environ Microbiol. 2016 May 16;82(11):3384-3394. doi: 10.1128/AEM.04077-15. Print 2016 Jun 1.

24.

Genomic evidence reveals numerous Salmonella enterica serovar Newport reintroduction events in Suwannee watershed irrigation ponds.

Li B, Jackson SA, Gangiredla J, Wang W, Liu H, Tall BD, Beaubrun JJ, Jay-Russell M, Vellidis G, Elkins CA.

Appl Environ Microbiol. 2015 Dec;81(24):8243-53. doi: 10.1128/AEM.02179-15. Epub 2015 Sep 18.

25.

Genetic and resistance phenotypic subtyping of Salmonella Saintpaul isolates from various food sources and humans: Phylogenetic concordance in combinatory analyses.

Hayford AE, Brown EW, Zhao S, Mammel MK, Gangiredla J, Abbott JW, Friedman SL, Ayers SL, Lewis JL, Lacher DW, McDermott P, Elkins CA.

Infect Genet Evol. 2015 Dec;36:92-107. doi: 10.1016/j.meegid.2015.08.022. Epub 2015 Aug 20.

PMID:
26299886
26.

Development of a Custom-Designed, Pan Genomic DNA Microarray to Characterize Strain-Level Diversity among Cronobacter spp.

Tall BD, Gangiredla J, Gopinath GR, Yan Q, Chase HR, Lee B, Hwang S, Trach L, Park E, Yoo Y, Chung T, Jackson SA, Patel IR, Sathyamoorthy V, Pava-Ripoll M, Kotewicz ML, Carter L, Iversen C, Pagotto F, Stephan R, Lehner A, Fanning S, Grim CJ.

Front Pediatr. 2015 Apr 30;3:36. doi: 10.3389/fped.2015.00036. eCollection 2015.

27.

Comparative Genotypic and Phenotypic Analysis of Cronobacter Species Cultured from Four Powdered Infant Formula Production Facilities: Indication of Pathoadaptation along the Food Chain.

Yan Q, Wang J, Gangiredla J, Cao Y, Martins M, Gopinath GR, Stephan R, Lampel K, Tall BD, Fanning S.

Appl Environ Microbiol. 2015 Jul;81(13):4388-402. doi: 10.1128/AEM.00359-15. Epub 2015 Apr 24.

28.

Comparison of Salmonella enterica serovar Bovismorbificans 2011 hummus outbreak strains with non-outbreak strains.

Blaylock M, Blackwell R, Merid S, Jackson S, Kotewicz M, Gopinath G, Ayers SL, Abbott J, Sabo J, Ewing L, Gangiredla J, Gebru S, Patel I, Jones B, Dudley K, Jarvis K, Hanes DE, Diallo AA, Jean-Gilles Beaubrun J.

Food Microbiol. 2015 Apr;46:627-634. doi: 10.1016/j.fm.2014.02.016. Epub 2014 Mar 25.

PMID:
25475337
29.

Novel microarray design for molecular serotyping of shiga toxin- producing Escherichia coli strains isolated from fresh produce.

Lacher DW, Gangiredla J, Jackson SA, Elkins CA, Feng PC.

Appl Environ Microbiol. 2014 Aug;80(15):4677-4682.

30.

The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

Gopinath G, Hari K, Jain R, Mammel MK, Kothary MH, Franco AA, Grim CJ, Jarvis KG, Sathyamoorthy V, Hu L, Datta AR, Patel IR, Jackson SA, Gangiredla J, Kotewicz ML, LeClerc JE, Wekell M, McCardell BA, Solomotis MD, Tall BD.

Food Microbiol. 2013 Jun;34(2):303-18. doi: 10.1016/j.fm.2013.01.001. Epub 2013 Jan 23.

PMID:
23541197
31.

Rapid genomic-scale analysis of Escherichia coli O104:H4 by using high-resolution alternative methods to next-generation sequencing.

Jackson SA, Kotewicz ML, Patel IR, Lacher DW, Gangiredla J, Elkins CA.

Appl Environ Microbiol. 2012 Mar;78(5):1601-5. doi: 10.1128/AEM.07464-11. Epub 2011 Dec 30.

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