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Items: 1 to 50 of 112

1.

Influence of recombination and GC-biased gene conversion on the adaptive and non-adaptive substitution rate in mammals vs. birds.

Rousselle M, Laverré A, Figuet E, Nabholz B, Galtier N.

Mol Biol Evol. 2018 Dec 27. doi: 10.1093/molbev/msy243. [Epub ahead of print]

PMID:
30590692
2.

Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius.

Pinharanda A, Rousselle M, Martin SH, Hanly JJ, Davey JW, Kumar S, Galtier N, Jiggins CD.

J Evol Biol. 2018 Dec 6. doi: 10.1111/jeb.13410. [Epub ahead of print]

PMID:
30523653
3.

Overestimation of the adaptive substitution rate in fluctuating populations.

Rousselle M, Mollion M, Nabholz B, Bataillon T, Galtier N.

Biol Lett. 2018 May;14(5). pii: 20180055. doi: 10.1098/rsbl.2018.0055.

PMID:
29743267
4.

Consequences of Asexuality in Natural Populations: Insights from Stick Insects.

Bast J, Parker DJ, Dumas Z, Jalvingh KM, Tran Van P, Jaron KS, Figuet E, Brandt A, Galtier N, Schwander T.

Mol Biol Evol. 2018 Jul 1;35(7):1668-1677. doi: 10.1093/molbev/msy058.

5.

Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion.

Galtier N, Roux C, Rousselle M, Romiguier J, Figuet E, Glémin S, Bierne N, Duret L.

Mol Biol Evol. 2018 May 1;35(5):1092-1103. doi: 10.1093/molbev/msy015.

PMID:
29390090
6.

Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA.

Tilak MK, Botero-Castro F, Galtier N, Nabholz B.

Genome Biol Evol. 2018 Feb 1;10(2):616-622. doi: 10.1093/gbe/evy022.

7.

Patterns of Genome-Wide Nucleotide Diversity in the Gynodioecious Plant Thymus vulgaris Are Compatible with Recent Sweeps of Cytoplasmic Genes.

Mollion M, Ehlers BK, Figuet E, Santoni S, Lenormand T, Maurice S, Galtier N, Bataillon T.

Genome Biol Evol. 2018 Jan 1;10(1):239-248. doi: 10.1093/gbe/evx272.

8.
9.

Avian Genomes Revisited: Hidden Genes Uncovered and the Rates versus Traits Paradox in Birds.

Botero-Castro F, Figuet E, Tilak MK, Nabholz B, Galtier N.

Mol Biol Evol. 2017 Dec 1;34(12):3123-3131. doi: 10.1093/molbev/msx236.

PMID:
28962031
10.

Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions.

Ballenghien M, Faivre N, Galtier N.

BMC Biol. 2017 Mar 29;15(1):25. doi: 10.1186/s12915-017-0366-6.

11.

Incomplete Lineage Sorting in Mammalian Phylogenomics.

Scornavacca C, Galtier N.

Syst Biol. 2017 Jan 1;66(1):112-120. doi: 10.1093/sysbio/syw082.

PMID:
28173480
12.

Positive selection on sperm ion channels in a brooding brittle star: consequence of life-history traits evolution.

Weber AA, Abi-Rached L, Galtier N, Bernard A, Montoya-Burgos JI, Chenuil A.

Mol Ecol. 2017 Jul;26(14):3744-3759. doi: 10.1111/mec.14024. Epub 2017 Feb 8.

PMID:
28099777
13.

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence.

Roux C, Fraïsse C, Romiguier J, Anciaux Y, Galtier N, Bierne N.

PLoS Biol. 2016 Dec 27;14(12):e2000234. doi: 10.1371/journal.pbio.2000234. eCollection 2016 Dec.

14.

Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies.

Rousselle M, Faivre N, Ballenghien M, Galtier N, Nabholz B.

Genome Biol Evol. 2016 Oct 23;8(10):3108-3119.

15.

Population genomics of sexual and asexual lineages in fissiparous ribbon worms (Lineus, Nemertea): hybridization, polyploidy and the Meselson effect.

Ament-Velásquez SL, Figuet E, Ballenghien M, Zattara EE, Norenburg JL, Fernández-Álvarez FA, Bierne J, Bierne N, Galtier N.

Mol Ecol. 2016 Jul;25(14):3356-69. doi: 10.1111/mec.13717.

PMID:
27286413
16.

Determinants of genetic diversity.

Ellegren H, Galtier N.

Nat Rev Genet. 2016 Jul;17(7):422-33. doi: 10.1038/nrg.2016.58. Epub 2016 Jun 6. Review.

PMID:
27265362
17.

A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate.

Bataillon T, Galtier N, Bernard A, Cryer N, Faivre N, Santoni S, Severac D, Mikkelsen TN, Larsen KS, Beier C, Sørensen JG, Holmstrup M, Ehlers BK.

Glob Chang Biol. 2016 Jul;22(7):2370-9. doi: 10.1111/gcb.13293. Epub 2016 Apr 24.

18.

Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes.

Figuet E, Nabholz B, Bonneau M, Mas Carrio E, Nadachowska-Brzyska K, Ellegren H, Galtier N.

Mol Biol Evol. 2016 Jun;33(6):1517-27. doi: 10.1093/molbev/msw033. Epub 2016 Mar 4.

PMID:
26944704
19.

Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis.

Galtier N.

PLoS Genet. 2016 Jan 11;12(1):e1005774. doi: 10.1371/journal.pgen.1005774. eCollection 2016 Jan.

20.

Comparative Analysis of Transcriptomes from Secondary Reproductives of Three Reticulitermes Termite Species.

Dedeine F, Weinert LA, Bigot D, Josse T, Ballenghien M, Cahais V, Galtier N, Gayral P.

PLoS One. 2015 Dec 23;10(12):e0145596. doi: 10.1371/journal.pone.0145596. eCollection 2015.

21.

Quantification of GC-biased gene conversion in the human genome.

Glémin S, Arndt PF, Messer PW, Petrov D, Galtier N, Duret L.

Genome Res. 2015 Aug;25(8):1215-28. doi: 10.1101/gr.185488.114. Epub 2015 May 20.

22.

Molecular Evolution of Freshwater Snails with Contrasting Mating Systems.

Burgarella C, Gayral P, Ballenghien M, Bernard A, David P, Jarne P, Correa A, Hurtrez-Boussès S, Escobar J, Galtier N, Glémin S.

Mol Biol Evol. 2015 Sep;32(9):2403-16. doi: 10.1093/molbev/msv121. Epub 2015 May 14.

PMID:
25980005
23.

Gene expression, chromosome heterogeneity and the fast-X effect in mammals.

Nguyen LP, Galtier N, Nabholz B.

Biol Lett. 2015 Feb;11(2):20150010. doi: 10.1098/rsbl.2015.0010.

24.

[Parental investment predicts genetic diversity in animal species].

Galtier N, Romiguier J.

Med Sci (Paris). 2015 Jan;31(1):17-9. doi: 10.1051/medsci/20153101005. Epub 2015 Feb 6. French. No abstract available.

25.

Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates.

Figuet E, Ballenghien M, Romiguier J, Galtier N.

Genome Biol Evol. 2014 Dec 19;7(1):240-50. doi: 10.1093/gbe/evu277.

26.

Comparative population genomics in animals uncovers the determinants of genetic diversity.

Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, Chenuil A, Chiari Y, Dernat R, Duret L, Faivre N, Loire E, Lourenco JM, Nabholz B, Roux C, Tsagkogeorga G, Weber AA, Weinert LA, Belkhir K, Bierne N, Glémin S, Galtier N.

Nature. 2014 Nov 13;515(7526):261-3. doi: 10.1038/nature13685. Epub 2014 Aug 20.

27.

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.

Douzery EJ, Scornavacca C, Romiguier J, Belkhir K, Galtier N, Delsuc F, Ranwez V.

Mol Biol Evol. 2014 Jul;31(7):1923-8. doi: 10.1093/molbev/msu132. Epub 2014 Apr 9.

PMID:
24723423
28.

Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals.

Figuet E, Romiguier J, Dutheil JY, Galtier N.

J Evol Biol. 2014 May;27(5):899-910. doi: 10.1111/jeb.12361. Epub 2014 Apr 10.

29.

Population genomics of eusocial insects: the costs of a vertebrate-like effective population size.

Romiguier J, Lourenco J, Gayral P, Faivre N, Weinert LA, Ravel S, Ballenghien M, Cahais V, Bernard A, Loire E, Keller L, Galtier N.

J Evol Biol. 2014 Mar;27(3):593-603. doi: 10.1111/jeb.12331. Epub 2014 Feb 7.

30.

Population genomics of the endangered giant Galápagos tortoise.

Loire E, Chiari Y, Bernard A, Cahais V, Romiguier J, Nabholz B, Lourenço JM, Galtier N.

Genome Biol. 2013 Dec 16;14(12):R136. doi: 10.1186/gb-2013-14-12-r136.

31.

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals.

Romiguier J, Ranwez V, Delsuc F, Galtier N, Douzery EJ.

Mol Biol Evol. 2013 Sep;30(9):2134-44. doi: 10.1093/molbev/mst116. Epub 2013 Jun 29.

PMID:
23813978
32.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.

PMID:
23699471
33.

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap.

Gayral P, Melo-Ferreira J, Glémin S, Bierne N, Carneiro M, Nabholz B, Lourenco JM, Alves PC, Ballenghien M, Faivre N, Belkhir K, Cahais V, Loire E, Bernard A, Galtier N.

PLoS Genet. 2013 Apr;9(4):e1003457. doi: 10.1371/journal.pgen.1003457. Epub 2013 Apr 11.

34.

Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species.

Roux C, Tsagkogeorga G, Bierne N, Galtier N.

Mol Biol Evol. 2013 Jul;30(7):1574-87. doi: 10.1093/molbev/mst066. Epub 2013 Apr 5.

PMID:
23564941
35.

The rate of molecular adaptation in a changing environment.

Lourenço JM, Glémin S, Galtier N.

Mol Biol Evol. 2013 Jun;30(6):1292-301. doi: 10.1093/molbev/mst026. Epub 2013 Feb 14.

PMID:
23412912
36.

The determinants of the molecular substitution process in turtles.

Lourenço JM, Glémin S, Chiari Y, Galtier N.

J Evol Biol. 2013 Jan;26(1):38-50. doi: 10.1111/jeb.12031. Epub 2012 Nov 23.

37.

Genomic evidence for large, long-lived ancestors to placental mammals.

Romiguier J, Ranwez V, Douzery EJ, Galtier N.

Mol Biol Evol. 2013 Jan;30(1):5-13. doi: 10.1093/molbev/mss211. Epub 2012 Sep 4.

PMID:
22949523
38.

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria).

Chiari Y, Cahais V, Galtier N, Delsuc F.

BMC Biol. 2012 Jul 27;10:65. doi: 10.1186/1741-7007-10-65.

39.

The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis.

Tsagkogeorga G, Cahais V, Galtier N.

Genome Biol Evol. 2012;4(8):740-9. doi: 10.1093/gbe/evs054. Epub 2012 Jun 28.

40.

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, Belkhir K, Ranwez V, Galtier N.

Mol Ecol Resour. 2012 Sep;12(5):834-45. doi: 10.1111/j.1755-0998.2012.03148.x. Epub 2012 Apr 30.

PMID:
22540679
41.

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping.

Romiguier J, Figuet E, Galtier N, Douzery EJ, Boussau B, Dutheil JY, Ranwez V.

PLoS One. 2012;7(3):e33852. doi: 10.1371/journal.pone.0033852. Epub 2012 Mar 27.

42.

Genome evolution in outcrossing versus selfing versus asexual species.

Glémin S, Galtier N.

Methods Mol Biol. 2012;855:311-35. doi: 10.1007/978-1-61779-582-4_11. Review.

PMID:
22407714
43.

Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome.

Carneiro M, Albert FW, Melo-Ferreira J, Galtier N, Gayral P, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Ferrand N.

Mol Biol Evol. 2012 Jul;29(7):1837-49. doi: 10.1093/molbev/mss025. Epub 2012 Jan 31.

44.

Efficient selection of branch-specific models of sequence evolution.

Dutheil JY, Galtier N, Romiguier J, Douzery EJ, Ranwez V, Boussau B.

Mol Biol Evol. 2012 Jul;29(7):1861-74. doi: 10.1093/molbev/mss059. Epub 2012 Feb 2.

PMID:
22319139
45.

Dating cryptodiran nodes: origin and diversification of the turtle superfamily Testudinoidea.

Lourenço JM, Claude J, Galtier N, Chiari Y.

Mol Phylogenet Evol. 2012 Jan;62(1):496-507. doi: 10.1016/j.ympev.2011.10.022. Epub 2011 Nov 12.

PMID:
22100825
46.

The intriguing evolutionary dynamics of plant mitochondrial DNA.

Galtier N.

BMC Biol. 2011 Sep 27;9:61. doi: 10.1186/1741-7007-9-61.

47.

Complexity, pleiotropy, and the fitness effect of mutations.

Lourenço J, Galtier N, Glémin S.

Evolution. 2011 Jun;65(6):1559-71. doi: 10.1111/j.1558-5646.2011.01237.x. Epub 2011 Mar 3.

PMID:
21644948
48.

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.

Gayral P, Weinert L, Chiari Y, Tsagkogeorga G, Ballenghien M, Galtier N.

Mol Ecol Resour. 2011 Jul;11(4):650-61. doi: 10.1111/j.1755-0998.2011.03010.x. Epub 2011 Apr 12.

PMID:
21481219
49.

GC-biased gene conversion impacts ribosomal DNA evolution in vertebrates, angiosperms, and other eukaryotes.

Escobar JS, Glémin S, Galtier N.

Mol Biol Evol. 2011 Sep;28(9):2561-75. doi: 10.1093/molbev/msr079. Epub 2011 Mar 28.

PMID:
21444650
50.

Accelerated evolutionary rate of housekeeping genes in tunicates.

Tsagkogeorga G, Turon X, Galtier N, Douzery EJ, Delsuc F.

J Mol Evol. 2010 Aug;71(2):153-67. doi: 10.1007/s00239-010-9372-9. Epub 2010 Aug 10.

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