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Items: 1 to 50 of 270

1.

G protein-coupled receptors of class A harness the energy of membrane potential to increase their sensitivity and selectivity.

Shalaeva DN, Cherepanov DA, Galperin MY, Vriend G, Mulkidjanian AY.

Biochim Biophys Acta Biomembr. 2019 Aug 23;1861(12):183051. doi: 10.1016/j.bbamem.2019.183051. [Epub ahead of print]

PMID:
31449800
2.

Electron Transfer Methods in Open Systems.

Bergmann N, Galperin M.

J Phys Chem B. 2019 Aug 22;123(33):7225-7232. doi: 10.1021/acs.jpcb.9b05813. Epub 2019 Aug 13.

PMID:
31361138
3.

Selective triplet exciton formation in a single molecule.

Kimura K, Miwa K, Imada H, Imai-Imada M, Kawahara S, Takeya J, Kawai M, Galperin M, Kim Y.

Nature. 2019 Jun;570(7760):210-213. doi: 10.1038/s41586-019-1284-2. Epub 2019 Jun 5.

PMID:
31168096
4.

Auxiliary Master Equation for Nonequilibrium Dual-Fermion Approach.

Chen F, Cohen G, Galperin M.

Phys Rev Lett. 2019 May 10;122(18):186803. doi: 10.1103/PhysRevLett.122.186803.

PMID:
31144909
5.

Electronic friction in interacting systems.

Chen F, Miwa K, Galperin M.

J Chem Phys. 2019 May 7;150(17):174101. doi: 10.1063/1.5095425.

PMID:
31067885
6.

Two forms of phosphomannomutase in gammaproteobacteria: The overlooked membrane-bound form of AlgC is required for twitching motility of Lysobacter enzymogenes.

Qian G, Fei S, Galperin MY.

Environ Microbiol. 2019 Apr 1. doi: 10.1111/1462-2920.14615. [Epub ahead of print]

PMID:
30938049
7.

Hubbard Nonequilibrium Green's Function Analysis of Photocurrent in Nitroazobenzene Molecular Junction.

Miwa K, Najarian AM, McCreery RL, Galperin M.

J Phys Chem Lett. 2019 Apr 4;10(7):1550-1557. doi: 10.1021/acs.jpclett.9b00270. Epub 2019 Mar 20.

PMID:
30879300
8.

Many-Body State Description of Single-Molecule Electroluminescence Driven by a Scanning Tunneling Microscope.

Miwa K, Imada H, Imai-Imada M, Kimura K, Galperin M, Kim Y.

Nano Lett. 2019 May 8;19(5):2803-2811. doi: 10.1021/acs.nanolett.8b04484. Epub 2019 Feb 5.

PMID:
30694065
9.

Breast mass classification in sonography with transfer learning using a deep convolutional neural network and color conversion.

Byra M, Galperin M, Ojeda-Fournier H, Olson L, O'Boyle M, Comstock C, Andre M.

Med Phys. 2019 Feb;46(2):746-755. doi: 10.1002/mp.13361. Epub 2019 Jan 16.

PMID:
30589947
10.

Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism.

Shalaeva DN, Cherepanov DA, Galperin MY, Golovin AV, Mulkidjanian AY.

Elife. 2018 Dec 11;7. pii: e37373. doi: 10.7554/eLife.37373.

11.

Current-Induced Forces for Nonadiabatic Molecular Dynamics.

Chen F, Miwa K, Galperin M.

J Phys Chem A. 2019 Jan 24;123(3):693-701. doi: 10.1021/acs.jpca.8b09251. Epub 2018 Nov 9.

PMID:
30354167
12.

Oxathiapiprolin-based fungicides provide enhanced control of tomato late blight induced by mefenoxam-insensitive Phytophthora infestans.

Cohen Y, Rubin AE, Galperin M.

PLoS One. 2018 Sep 27;13(9):e0204523. doi: 10.1371/journal.pone.0204523. eCollection 2018.

13.

What bacteria want.

Galperin MY.

Environ Microbiol. 2018 Dec;20(12):4221-4229. doi: 10.1111/1462-2920.14398. Epub 2018 Oct 25. Review.

PMID:
30187651
14.

Kinetic Schemes in Open Interacting Systems.

Nitzan A, Galperin M.

J Phys Chem Lett. 2018 Sep 6;9(17):4886-4892. doi: 10.1021/acs.jpclett.8b01886. Epub 2018 Aug 14.

PMID:
30095264
15.

Structural and Functional Characterization of the BcsG Subunit of the Cellulose Synthase in Salmonella typhimurium.

Sun L, Vella P, Schnell R, Polyakova A, Bourenkov G, Li F, Cimdins A, Schneider TR, Lindqvist Y, Galperin MY, Schneider G, Römling U.

J Mol Biol. 2018 Sep 14;430(18 Pt B):3170-3189. doi: 10.1016/j.jmb.2018.07.008. Epub 2018 Jul 12.

PMID:
30017920
16.

CD4+ T cell-mediated HLA class II cross-restriction in HIV controllers.

Galperin M, Farenc C, Mukhopadhyay M, Jayasinghe D, Decroos A, Benati D, Tan LL, Ciacchi L, Reid HH, Rossjohn J, Chakrabarti LA, Gras S.

Sci Immunol. 2018 Jun 8;3(24). pii: eaat0687. doi: 10.1126/sciimmunol.aat0687.

PMID:
29884618
17.

On simulation of local fluxes in molecular junctions.

Cabra G, Jensen A, Galperin M.

J Chem Phys. 2018 May 28;148(20):204103. doi: 10.1063/1.5029252.

PMID:
29865820
18.

A High Frequency of HIV-Specific Circulating Follicular Helper T Cells Is Associated with Preserved Memory B Cell Responses in HIV Controllers.

Claireaux M, Galperin M, Benati D, Nouël A, Mukhopadhyay M, Klingler J, de Truchis P, Zucman D, Hendou S, Boufassa F, Moog C, Lambotte O, Chakrabarti LA.

MBio. 2018 May 8;9(3). pii: e00317-18. doi: 10.1128/mBio.00317-18.

19.

A bacterial coat that is not pure cotton.

Galperin MY, Shalaeva DN.

Science. 2018 Jan 19;359(6373):276-277. doi: 10.1126/science.aar5253. No abstract available.

PMID:
29348224
20.

Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems.

Galperin MY, Makarova KS, Wolf YI, Koonin EV.

J Bacteriol. 2018 Mar 12;200(7). pii: e00681-17. doi: 10.1128/JB.00681-17. Print 2018 Apr 1.

21.

Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea.

Makarova KS, Galperin MY, Koonin EV.

MBio. 2017 Dec 5;8(6). pii: e01959-17. doi: 10.1128/mBio.01959-17.

23.

DNA Vaccination by Electroporation Amplifies Broadly Cross-Restricted Public TCR Clonotypes Shared with HIV Controllers.

Mukhopadhyay M, Galperin M, Patgaonkar M, Vasan S, Ho DD, Nouël A, Claireaux M, Benati D, Lambotte O, Huang Y, Chakrabarti LA.

J Immunol. 2017 Nov 15;199(10):3437-3452. doi: 10.4049/jimmunol.1700953. Epub 2017 Oct 9.

24.

Microbial genome analysis: the COG approach.

Galperin MY, Kristensen DM, Makarova KS, Wolf YI, Koonin EV.

Brief Bioinform. 2017 Sep 14. doi: 10.1093/bib/bbx117. [Epub ahead of print]

PMID:
28968633
25.

Discovery of the Second Messenger Cyclic di-GMP.

Römling U, Galperin MY.

Methods Mol Biol. 2017;1657:1-8. doi: 10.1007/978-1-4939-7240-1_1. Review.

27.

Towards Noise Simulation in Interacting Nonequilibrium Systems Strongly Coupled to Baths.

Miwa K, Chen F, Galperin M.

Sci Rep. 2017 Aug 29;7(1):9735. doi: 10.1038/s41598-017-09060-0.

28.

Stand-Alone EAL Domain Proteins Form a Distinct Subclass of EAL Proteins Involved in Regulation of Cell Motility and Biofilm Formation in Enterobacteria.

El Mouali Y, Kim H, Ahmad I, Brauner A, Liu Y, Skurnik M, Galperin MY, Römling U.

J Bacteriol. 2017 Aug 22;199(18). pii: e00179-17. doi: 10.1128/JB.00179-17. Print 2017 Sep 15.

29.

Emergence of cytochrome bc complexes in the context of photosynthesis.

Dibrova DV, Shalaeva DN, Galperin MY, Mulkidjanian AY.

Physiol Plant. 2017 Sep;161(1):150-170. doi: 10.1111/ppl.12586. Epub 2017 Jul 4.

30.

Photonics and spectroscopy in nanojunctions: a theoretical insight.

Galperin M.

Chem Soc Rev. 2017 Jul 3;46(13):4000-4019. doi: 10.1039/c7cs00067g. Review.

PMID:
28398449
31.

The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.

Galperin MY, Fernández-Suárez XM, Rigden DJ.

Nucleic Acids Res. 2017 May 19;45(9):5627. doi: 10.1093/nar/gkx021. No abstract available.

32.

Genome Sequence of Uric Acid-Fermenting Eubacterium angustum DSM 1989T (MK-1).

Poehlein A, Galperin MY, Andreesen JR, Daniel R.

Genome Announc. 2017 Jan 12;5(2). pii: e01439-16. doi: 10.1128/genomeA.01439-16.

33.

The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.

Galperin MY, Fernández-Suárez XM, Rigden DJ.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1-D11. doi: 10.1093/nar/gkw1188. Erratum in: Nucleic Acids Res. 2017 May 19;45(9):5627.

35.

Sustained sensing as an emerging principle in second messenger signaling systems.

Orr MW, Galperin MY, Lee VT.

Curr Opin Microbiol. 2016 Dec;34:119-126. doi: 10.1016/j.mib.2016.08.010. Epub 2016 Oct 1. Review.

36.

Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain.

Wang YC, Chin KH, Tu ZL, He J, Jones CJ, Sanchez DZ, Yildiz FH, Galperin MY, Chou SH.

Nat Commun. 2016 Aug 31;7:12481. doi: 10.1038/ncomms12481.

37.

On the widths of Stokes lines in Raman scattering from molecules adsorbed at metal surfaces and in molecular conduction junctions.

Gao Y, Galperin M, Nitzan A.

J Chem Phys. 2016 Jun 28;144(24):244114. doi: 10.1063/1.4954912.

PMID:
27369504
38.

Simulation of optical response functions in molecular junctions.

Gao Y, Galperin M.

J Chem Phys. 2016 Jun 28;144(24):244106. doi: 10.1063/1.4954407.

PMID:
27369496
39.

Optical spectroscopy of molecular junctions: Nonequilibrium Green's functions perspective.

Gao Y, Galperin M.

J Chem Phys. 2016 May 7;144(17):174113. doi: 10.1063/1.4948469.

PMID:
27155631
40.

Public T cell receptors confer high-avidity CD4 responses to HIV controllers.

Benati D, Galperin M, Lambotte O, Gras S, Lim A, Mukhopadhyay M, Nouël A, Campbell KA, Lemercier B, Claireaux M, Hendou S, Lechat P, de Truchis P, Boufassa F, Rossjohn J, Delfraissy JF, Arenzana-Seisdedos F, Chakrabarti LA.

J Clin Invest. 2016 Jun 1;126(6):2093-108. doi: 10.1172/JCI83792. Epub 2016 Apr 25.

41.

The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection.

Rigden DJ, Fernández-Suárez XM, Galperin MY.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1-6. doi: 10.1093/nar/gkv1356.

42.

Nuclear Dynamics at Molecule-Metal Interfaces: A Pseudoparticle Perspective.

Galperin M, Nitzan A.

J Phys Chem Lett. 2015 Dec 17;6(24):4898-903. doi: 10.1021/acs.jpclett.5b02331. Epub 2015 Nov 25.

43.

Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II Secretion Systems.

Roelofs KG, Jones CJ, Helman SR, Shang X, Orr MW, Goodson JR, Galperin MY, Yildiz FH, Lee VT.

PLoS Pathog. 2015 Oct 27;11(10):e1005232. doi: 10.1371/journal.ppat.1005232. eCollection 2015 Oct.

44.

Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodium-translocating rhodopsins.

Shalaeva DN, Galperin MY, Mulkidjanian AY.

Biol Direct. 2015 Oct 15;10:63. doi: 10.1186/s13062-015-0091-4.

45.

Effects of Electromagnetic Coupling on Conductance Switching of a Gated Tunnel Junction.

Baratz A, White AJ, Galperin M, Baer R.

J Phys Chem Lett. 2014 Oct 16;5(20):3545-50. doi: 10.1021/jz501652y. Epub 2014 Oct 6. No abstract available.

PMID:
26278607
46.

Pump-Probe Noise Spectroscopy of Molecular Junctions.

Ochoa MA, Selzer Y, Peskin U, Galperin M.

J Phys Chem Lett. 2015 Feb 5;6(3):470-6. doi: 10.1021/jz502484z. Epub 2015 Jan 21.

PMID:
26261965
47.

Systematic Nomenclature for GGDEF and EAL Domain-Containing Cyclic Di-GMP Turnover Proteins of Escherichia coli.

Hengge R, Galperin MY, Ghigo JM, Gomelsky M, Green J, Hughes KT, Jenal U, Landini P.

J Bacteriol. 2015 Jul 6;198(1):7-11. doi: 10.1128/JB.00424-15. Print 2016 Jan 1.

48.

Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions.

Römling U, Galperin MY.

Trends Microbiol. 2015 Sep;23(9):545-57. doi: 10.1016/j.tim.2015.05.005. Epub 2015 Jun 12. Review.

49.

Ancient Systems of Sodium/Potassium Homeostasis as Predecessors of Membrane Bioenergetics.

Dibrova DV, Galperin MY, Koonin EV, Mulkidjanian AY.

Biochemistry (Mosc). 2015 May;80(5):495-516. doi: 10.1134/S0006297915050016.

50.

Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms.

Chou SH, Galperin MY.

J Bacteriol. 2016 Jan 1;198(1):32-46. Review.

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