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Items: 38

1.

A community computational challenge to predict the activity of pairs of compounds.

Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, Mattioli M, Alvarez MJ, Shen Y; NCI-DREAM Community, Gallahan D, Singer D, Saez-Rodriguez J, Xie Y, Stolovitzky G, Califano A; NCI-DREAM Community.

Nat Biotechnol. 2014 Dec;32(12):1213-22. doi: 10.1038/nbt.3052. Epub 2014 Nov 17.

2.

A community effort to assess and improve drug sensitivity prediction algorithms.

Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K; NCI DREAM Community, Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G.

Nat Biotechnol. 2014 Dec;32(12):1202-12. doi: 10.1038/nbt.2877. Epub 2014 Jun 1.

3.

Systems biology: confronting the complexity of cancer.

Gentles AJ, Gallahan D.

Cancer Res. 2011 Sep 15;71(18):5961-4. doi: 10.1158/0008-5472.CAN-11-1569. Epub 2011 Sep 6.

4.

Systems biologists seek fuller integration of systems biology approaches in new cancer research programs.

Wolkenhauer O, Auffray C, Baltrusch S, Blüthgen N, Byrne H, Cascante M, Ciliberto A, Dale T, Drasdo D, Fell D, Ferrell JE Jr, Gallahan D, Gatenby R, Günther U, Harms BD, Herzel H, Junghanss C, Kunz M, van Leeuwen I, Lenormand P, Levi F, Linnebacher M, Lowengrub J, Maini PK, Malik A, Rateitschak K, Sansom O, Schäfer R, Schürrle K, Sers C, Schnell S, Shibata D, Tyson J, Vera J, White M, Zhivotovsky B, Jaster R.

Cancer Res. 2010 Jan 1;70(1):12-3. doi: 10.1158/0008-5472.CAN-09-2676. Epub 2009 Dec 22.

5.

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).

Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, Goldbeter A, Hace N, Henney A, Hood L, Iyengar R, Jackson V, Kallioniemi O, Klingmüller U, Kolar P, Kolch W, Kyriakopoulou C, Laplace F, Lehrach H, Marcus F, Matrisian L, Nolan G, Pelkmans L, Potti A, Sander C, Seljak M, Singer D, Sorger P, Stunnenberg H, Superti-Furga G, Uhlen M, Vidal M, Weinstein J, Wigle D, Williams M, Wolkenhauer O, Zhivotovsky B, Zinovyev A, Zupan B.

Mol Oncol. 2009 Feb;3(1):9-17. doi: 10.1016/j.molonc.2008.11.003. Epub 2008 Dec 9.

6.

Digital biology: an emerging and promising discipline.

Morris RW, Bean CA, Farber GK, Gallahan D, Jakobsson E, Liu Y, Lyster PM, Peng GC, Roberts FS, Twery M, Whitmarsh J, Skinner K.

Trends Biotechnol. 2005 Mar;23(3):113-7. Review.

PMID:
15734552
7.

Notch signaling is essential for vascular morphogenesis in mice.

Krebs LT, Xue Y, Norton CR, Shutter JR, Maguire M, Sundberg JP, Gallahan D, Closson V, Kitajewski J, Callahan R, Smith GH, Stark KL, Gridley T.

Genes Dev. 2000 Jun 1;14(11):1343-52.

8.

Absence of human T-lymphotropic virus type I tax sequences in a population of normal blood donors in the Baltimore, MD/Washington, DC, area: results from a multicenter study.

Cowan EP, Nemo GJ, Williams AE, Alexander RK, Vallejo A, Hewlett IK, Lal RB, Dezzutti CS, Gallahan D, George K, Pancake BA, Zucker-Franklin D, McCurdy PR, Tabor E.

Transfusion. 1999 Aug;39(8):904-9.

PMID:
10504129
9.

False-positive HIV-1 test results in a low-risk screening setting of voluntary blood donation. Retrovirus Epidemiology Donor Study.

Kleinman S, Busch MP, Hall L, Thomson R, Glynn S, Gallahan D, Ownby HE, Williams AE.

JAMA. 1998 Sep 23-30;280(12):1080-5.

PMID:
9757856
10.

The chromosome location of the human homolog of the mouse mammary tumor-associated gene INT6 and its status in human breast carcinomas.

Miyazaki S, Imatani A, Ballard L, Marchetti A, Buttitta F, Albertsen H, Nevanlinna HA, Gallahan D, Callahan R.

Genomics. 1997 Nov 15;46(1):155-8.

PMID:
9403073
11.

Capillary electrophoresis methodology for identification of cancer related gene expression patterns of fluorescent differential display polymerase chain reaction.

George KS, Zhao X, Gallahan D, Shirkey A, Zareh A, Esmaeli-Azad B.

J Chromatogr B Biomed Sci Appl. 1997 Jul 18;695(1):93-102.

PMID:
9271133
12.
13.

Understanding mammary gland development through the imbalanced expression of growth regulators.

Robinson GW, Smith GH, Gallahan D, Zimmer A, Furth PA, Hennighausen L.

Dev Dyn. 1996 Jun;206(2):159-68.

14.

Expression of a truncated Int3 gene in developing secretory mammary epithelium specifically retards lobular differentiation resulting in tumorigenesis.

Gallahan D, Jhappan C, Robinson G, Hennighausen L, Sharp R, Kordon E, Callahan R, Merlino G, Smith GH.

Cancer Res. 1996 Apr 15;56(8):1775-85.

15.

A novel non-mouse mammary tumor virus activation of the Int-3 gene in a spontaneous mouse mammary tumor.

Kordon EC, Smith GH, Callahan R, Gallahan D.

J Virol. 1995 Dec;69(12):8066-9.

16.

The chromosomal location of the mouse mammary tumor gene Int6 and related pseudogenes in the mouse genome.

Miyazaki S, Kozak CA, Marchetti A, Buttitta F, Gallahan D, Callahan R.

Genomics. 1995 Jun 10;27(3):420-4.

PMID:
7558022
17.

Constitutive expression of a truncated INT3 gene in mouse mammary epithelium impairs differentiation and functional development.

Smith GH, Gallahan D, Diella F, Jhappan C, Merlino G, Callahan R.

Cell Growth Differ. 1995 May;6(5):563-77.

18.

Int-6, a highly conserved, widely expressed gene, is mutated by mouse mammary tumor virus in mammary preneoplasia.

Marchetti A, Buttitta F, Miyazaki S, Gallahan D, Smith GH, Callahan R.

J Virol. 1995 Mar;69(3):1932-8.

19.

Cloning and characterization of the mouse gene encoding mammary-derived growth inhibitor/heart-fatty acid-binding protein.

Treuner M, Kozak CA, Gallahan D, Grosse R, Müller T.

Gene. 1994 Sep 30;147(2):237-42.

PMID:
7926807
20.

Frequent mutations in breast cancer.

Callahan R, Gallahan D, Smith G, Cropp C, Merlo G, Diella F, Liscia D, Lidereau R.

Ann N Y Acad Sci. 1993 Nov 30;698:21-30. Review. No abstract available.

PMID:
8279759
21.

T-cell receptor b-V repertoire expression in the absence of an endogenous mouse mammary tumor provirus.

Hodes RJ, Abe R, Gallahan D, Callahan R.

Immunogenetics. 1993;37(4):309-11. No abstract available.

PMID:
8380566
22.

Common genetic pathways in breast oncogenesis.

Callahan R, Gallahan D, Smith G, Cropp C, Merlo G, Venesio T, Liscia D, Lidereau R.

Pathol Biol (Paris). 1992 Nov;39(9):910-1. No abstract available.

PMID:
1538928
23.

Mouse mammary tumor gene int-3: a member of the notch gene family transforms mammary epithelial cells.

Robbins J, Blondel BJ, Gallahan D, Callahan R.

J Virol. 1992 Apr;66(4):2594-9.

24.
25.

The genetic pathology of breast cancer.

Callahan R, Cropp C, Gallahan D, Liscia D, Merlo G, Smith GH, Lidereau R.

Prog Clin Biol Res. 1992;376:117-36. Review. No abstract available.

PMID:
1528917
26.

Long-term in vivo expression of genes introduced by retrovirus-mediated transfer into mammary epithelial cells.

Smith GH, Gallahan D, Zwiebel JA, Freeman SM, Bassin RH, Callahan R.

J Virol. 1991 Nov;65(11):6365-70.

27.
28.

Human papillomavirus type 53.

Gallahan D, Müller M, Schneider A, Delius H, Kahn T, de Villiers EM, Gissmann L.

J Virol. 1989 Nov;63(11):4911-2.

30.
31.

Genetic mapping of Prm-1, Igl-1, Smst, Mtv-6, Sod-1, and Ets-2 and localization of the Down syndrome region on mouse chromosome 16.

Reeves RH, Gallahan D, O'Hara BF, Callahan R, Gearhart JD.

Cytogenet Cell Genet. 1987;44(2-3):76-81.

PMID:
2882955
32.

An endogenous mouse mammary tumor virus genome common in inbred mouse strains is located on chromosome 6.

Robbins JM, Gallahan D, Hogg E, Kozak C, Callahan R.

J Virol. 1986 Feb;57(2):709-13.

33.

Endogenous MMTV proviral genomes in feral Mus musculus domesticus.

Callahan R, Gallahan D, D'Hoostelaere LA, Potter M.

Curr Top Microbiol Immunol. 1986;127:362-70. No abstract available.

PMID:
3015501
34.

Mammary tumorigenesis in feral species of the genus Mus.

Gallahan D, Escot C, Hogg E, Callahan R.

Curr Top Microbiol Immunol. 1986;127:354-61. No abstract available.

PMID:
3015500
35.

The genetic stability of endogenous type B and C retroviruses in BALB/c sublines.

Gallahan D, Robbins J, Byrd L, Callahan R.

Curr Top Microbiol Immunol. 1985;122:89-94. No abstract available.

PMID:
2994959
36.

Effect of MuLV-related genes on plasmacytomagenesis in BALB/c mice.

Potter M, Hartley JW, Wax JS, Gallahan D.

J Exp Med. 1984 Aug 1;160(2):435-40.

37.
38.

Novel class of mouse mammary tumor virus-related DNA sequences found in all species of Mus, including mice lacking the virus proviral genome.

Callahan R, Drohan W, Gallahan D, D'Hoostelaere L, Potter M.

Proc Natl Acad Sci U S A. 1982 Jul;79(13):4113-7.

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