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Items: 1 to 50 of 104

1.

A spatiotemporal DNA endoploidy map of the Arabidopsis root reveals roles for the endocycle in root development and stress adaptation.

Bhosale R, Boudolf V, Cuevas F, Lu R, Eekhout T, Hu Z, van Isterdael G, Lambert G, Xu F, Nowack MK, Smith RS, Vercauteren I, De Rycke RM, Storme V, Beeckman T, Larkin JC, Kremer A, Höfte H, Galbraith DW, Kumpf RP, Maere S, De Veylder L.

Plant Cell. 2018 Aug 16. pii: tpc.00983.2017. doi: 10.1105/tpc.17.00983. [Epub ahead of print]

PMID:
30115738
2.

Abscisic acid catabolism enhances dormancy release of grapevine buds.

Zheng C, Acheampong AK, Shi Z, Mugzech A, Halaly-Basha T, Shaya F, Sun Y, Colova V, Mosquna A, Ophir R, Galbraith DW, Or E.

Plant Cell Environ. 2018 Jun 15. doi: 10.1111/pce.13371. [Epub ahead of print]

PMID:
29907961
3.

Distinct gibberellin functions during and after grapevine bud dormancy release.

Zheng C, Kwame Acheampong A, Shi Z, Halaly T, Kamiya Y, Ophir R, Galbraith DW, Or E.

J Exp Bot. 2018 Mar 24;69(7):1635-1648. doi: 10.1093/jxb/ery022.

PMID:
29385616
4.

Nuclear Cytometry: Analysis of the Patterns of DNA Synthesis and Transcription Using Flow Cytometry, Confocal Microscopy, and RNA Sequencing.

Galbraith DW, Sliwinska E, Samadder P.

Methods Mol Biol. 2018;1678:371-392. doi: 10.1007/978-1-4939-7346-0_16.

PMID:
29071687
5.

Flow cytometry and single nucleus sorting for Cre-based analysis of changes in transcriptional states.

Samadder P, Weng N, Doetschman T, Heimark RL, Galbraith DW.

Cytometry A. 2016 May;89(5):430-42. doi: 10.1002/cyto.a.22847. Epub 2016 Mar 22.

6.

Expression and purification of recombinant proteins in Escherichia coli tagged with the metal-binding protein CusF.

Cantu-Bustos JE, Vargas-Cortez T, Morones-Ramirez JR, Balderas-Renteria I, Galbraith DW, McEvoy MM, Zarate X.

Protein Expr Purif. 2016 May;121:61-5. doi: 10.1016/j.pep.2016.01.007. Epub 2016 Jan 12.

PMID:
26805756
7.

Redrawing the frontiers in the age of post-publication review.

Galbraith DW.

Front Genet. 2015 Jun 5;6:198. doi: 10.3389/fgene.2015.00198. eCollection 2015.

8.

Digital data acquisition and processing.

Naivar MA, Galbraith DW.

Curr Protoc Cytom. 2015 Jan 5;71:10.19.1-13. doi: 10.1002/0471142956.cy1019s71.

PMID:
25559220
9.

Challenges and solutions in cytometric measurements of non-mammalian species.

Galbraith DW.

Cytometry A. 2014 Oct;85(10):831-2. doi: 10.1002/cyto.a.22523. No abstract available.

10.

TOPOISOMERASE 6B is involved in chromatin remodelling associated with control of carbon partitioning into secondary metabolites and cell walls, and epidermal morphogenesis in Arabidopsis.

Mittal A, Balasubramanian R, Cao J, Singh P, Subramanian S, Hicks G, Nothnagel EA, Abidi N, Janda J, Galbraith DW, Rock CD.

J Exp Bot. 2014 Aug;65(15):4217-39. doi: 10.1093/jxb/eru198. Epub 2014 May 12.

11.

Endoreduplicative standards for calibration of flow cytometric C-Value measurements.

Galbraith DW.

Cytometry A. 2014 Apr;85(4):368-74. doi: 10.1002/cyto.a.22440. Epub 2014 Jan 10.

12.

A cell-free expression platform for production of protein microarrays.

Zárate X, Galbraith DW.

Methods Mol Biol. 2014;1118:297-307. doi: 10.1007/978-1-62703-782-2_21.

PMID:
24395426
13.

RNA-sequencing from single nuclei.

Grindberg RV, Yee-Greenbaum JL, McConnell MJ, Novotny M, O'Shaughnessy AL, Lambert GM, Araúzo-Bravo MJ, Lee J, Fishman M, Robbins GE, Lin X, Venepally P, Badger JH, Galbraith DW, Gage FH, Lasken RS.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19802-7. doi: 10.1073/pnas.1319700110. Epub 2013 Nov 18.

14.

Identification and characterization of a repertoire of genes differentially expressed in developing top ear shoots between a superior hybrid and its parental inbreds in Zea mays L.

Qin J, Scheuring CF, Wei G, Zhi H, Zhang M, Huang JJ, Zhou X, Galbraith DW, Zhang HB.

Mol Genet Genomics. 2013 Dec;288(12):691-705. doi: 10.1007/s00438-013-0781-5. Epub 2013 Oct 22.

PMID:
24146224
15.

Flow cytometry and sorting in Arabidopsis.

Galbraith DW.

Methods Mol Biol. 2014;1062:509-37. doi: 10.1007/978-1-62703-580-4_27.

PMID:
24057384
16.

High-throughput monitoring of plant nuclear DNA contents via flow cytometry.

Galbraith DW, Lambert GM.

Methods Mol Biol. 2012;918:311-25. doi: 10.1007/978-1-61779-995-2_16.

PMID:
22893296
17.

The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.

Wang Z, Hobson N, Galindo L, Zhu S, Shi D, McDill J, Yang L, Hawkins S, Neutelings G, Datla R, Lambert G, Galbraith DW, Grassa CJ, Geraldes A, Cronk QC, Cullis C, Dash PK, Kumar PA, Cloutier S, Sharpe AG, Wong GK, Wang J, Deyholos MK.

Plant J. 2012 Nov;72(3):461-73. doi: 10.1111/j.1365-313X.2012.05093.x. Epub 2012 Aug 14.

18.

RNA interference-mediated gene knockdown within specific cell types.

Zhang C, Galbraith DW.

Plant Mol Biol. 2012 Sep;80(2):169-76. doi: 10.1007/s11103-012-9937-7. Epub 2012 Jun 28.

PMID:
22740284
19.

Frontiers in genomic assay technologies: the grand challenges in enabling data-intensive biological research.

Galbraith DW.

Front Genet. 2011 Jun 8;2:26. doi: 10.3389/fgene.2011.00026. eCollection 2011. No abstract available.

20.

A high-density quantitative nuclease protection microarray platform for high throughput analysis of gene expression.

Bourzac KM, Rounseville MP, Zarate X, Maddula VS, Henderson DC, Luckey JA, Seligmann B, Galbraith DW.

J Biotechnol. 2011 Jun 10;154(1):68-75. doi: 10.1016/j.jbiotec.2011.03.020. Epub 2011 Apr 8.

PMID:
21504771
21.

Optimizing microarray-based in situ transcription-translation of proteins for matrix-assisted laser desorption ionization mass spectrometry.

Kimzey MJ, Zarate X, Galbraith DW, Lau SS.

Anal Biochem. 2011 Jul 15;414(2):282-6. doi: 10.1016/j.ab.2011.03.030. Epub 2011 Apr 6.

22.

Multiparametric analysis, sorting, and transcriptional profiling of plant protoplasts and nuclei according to cell type.

Galbraith DW, Janda J, Lambert GM.

Methods Mol Biol. 2011;699:407-29. doi: 10.1007/978-1-61737-950-5_20. Review.

PMID:
21116995
23.

Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice.

Liu Y, Zhu XY, Zhang S, Bernardo M, Edwards J, Galbraith DW, Leach J, Zhang G, Liu B, Leung H.

Theor Appl Genet. 2011 Feb;122(2):341-53. doi: 10.1007/s00122-010-1450-2. Epub 2010 Sep 25.

PMID:
20872132
24.

Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis.

Oh DH, Dassanayake M, Haas JS, Kropornika A, Wright C, d'Urzo MP, Hong H, Ali S, Hernandez A, Lambert GM, Inan G, Galbraith DW, Bressan RA, Yun DJ, Zhu JK, Cheeseman JM, Bohnert HJ.

Plant Physiol. 2010 Nov;154(3):1040-52. doi: 10.1104/pp.110.163923. Epub 2010 Sep 10.

25.

Development of high-yield autofluorescent protein microarrays using hybrid cell-free expression with combined Escherichia coli S30 and wheat germ extracts.

Zárate X, Henderson DC, Phillips KC, Lake AD, Galbraith DW.

Proteome Sci. 2010 Jun 15;8:32. doi: 10.1186/1477-5956-8-32.

26.

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis.

Mustroph A, Zanetti ME, Jang CJ, Holtan HE, Repetti PP, Galbraith DW, Girke T, Bailey-Serres J.

Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18843-8. doi: 10.1073/pnas.0906131106. Epub 2009 Oct 20.

27.

Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice.

Andrés F, Galbraith DW, Talón M, Domingo C.

Plant Physiol. 2009 Oct;151(2):681-90. doi: 10.1104/pp.109.139097. Epub 2009 Aug 12.

28.

RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice.

Lee TH, Kim YK, Pham TT, Song SI, Kim JK, Kang KY, An G, Jung KH, Galbraith DW, Kim M, Yoon UH, Nahm BH.

Plant Physiol. 2009 Sep;151(1):16-33. doi: 10.1104/pp.109.139030. Epub 2009 Jul 15.

29.
30.

Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis.

Luo QJ, Samanta MP, Köksal F, Janda J, Galbraith DW, Richardson CR, Ou-Yang F, Rock CD.

PLoS Genet. 2009 Apr;5(4):e1000457. doi: 10.1371/journal.pgen.1000457. Epub 2009 Apr 17.

31.

Analysis of nuclear DNA content and ploidy in higher plants.

Galbraith DW, Lambert GM, Macas J, Dolezel J.

Curr Protoc Cytom. 2001 May;Chapter 7:Unit 7.6. doi: 10.1002/0471142956.cy0706s02.

PMID:
18770733
32.

Diurnal and circadian rhythms in the tomato transcriptome and their modulation by cryptochrome photoreceptors.

Facella P, Lopez L, Carbone F, Galbraith DW, Giuliano G, Perrotta G.

PLoS One. 2008 Jul 30;3(7):e2798. doi: 10.1371/journal.pone.0002798.

33.

Nanobiotechnology: silica breaks through in plants.

Galbraith DW.

Nat Nanotechnol. 2007 May;2(5):272-3. doi: 10.1038/nnano.2007.118. No abstract available.

PMID:
18654282
34.

Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break.

Mathiason K, He D, Grimplet J, Venkateswari J, Galbraith DW, Or E, Fennell A.

Funct Integr Genomics. 2009 Feb;9(1):81-96. doi: 10.1007/s10142-008-0090-y. Epub 2008 Jul 17.

PMID:
18633655
35.

Global analysis of cell type-specific gene expression.

Galbraith DW.

Comp Funct Genomics. 2003;4(2):208-15. doi: 10.1002/cfg.281.

36.

Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice.

Edwards JD, Janda J, Sweeney MT, Gaikwad AB, Liu B, Leung H, Galbraith DW.

Plant Methods. 2008 May 29;4:13. doi: 10.1186/1746-4811-4-13.

37.

Global characterization of cell-specific gene expression through fluorescence-activated sorting of nuclei.

Zhang C, Barthelson RA, Lambert GM, Galbraith DW.

Plant Physiol. 2008 May;147(1):30-40. doi: 10.1104/pp.107.115246. Epub 2008 Mar 19.

38.

Plant systems biology comes of age.

Yuan JS, Galbraith DW, Dai SY, Griffin P, Stewart CN Jr.

Trends Plant Sci. 2008 Apr;13(4):165-71. doi: 10.1016/j.tplants.2008.02.003. Epub 2008 Mar 7. Review.

PMID:
18329321
39.

Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells.

Barthelson RA, Lambert GM, Vanier C, Lynch RM, Galbraith DW.

BMC Genomics. 2007 Sep 25;8:340.

40.

Persistent infection and promiscuous recombination of multiple genotypes of an RNA virus within a single host generate extensive diversity.

Weng Z, Barthelson R, Gowda S, Hilf ME, Dawson WO, Galbraith DW, Xiong Z.

PLoS One. 2007 Sep 19;2(9):e917.

41.

High-throughput, high-sensitivity analysis of gene expression in Arabidopsis.

Kris RM, Felder S, Deyholos M, Lambert GM, Hinton J, Botros I, Martel R, Seligmann B, Galbraith DW.

Plant Physiol. 2007 Jul;144(3):1256-66. Epub 2007 May 11.

42.

DNA microarray analyses in higher plants.

Galbraith DW.

OMICS. 2006 Winter;10(4):455-73. Review.

PMID:
17233557
43.

The daunting process of MIAME.

Galbraith DW.

Nature. 2006 Nov 2;444(7115):31. No abstract available.

PMID:
17080064
44.

A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana.

Li J, Li X, Su H, Chen H, Galbraith DW.

Bioinformatics. 2006 Aug 15;22(16):2037-43. Epub 2006 Jul 4.

PMID:
16820427
45.

Global studies of cell type-specific gene expression in plants.

Galbraith DW, Birnbaum K.

Annu Rev Plant Biol. 2006;57:451-75. Review.

PMID:
16669770
46.

Development of a comprehensive detection method for medicinal and toxic plant species.

Barthelson RA, Sundareshan P, Galbraith DW, Woosley RL.

Am J Bot. 2006 Apr;93(4):566-74. doi: 10.3732/ajb.93.4.566.

47.

Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon.

Rangwala SH, Elumalai R, Vanier C, Ozkan H, Galbraith DW, Richards EJ.

PLoS Genet. 2006 Mar;2(3):e36. Epub 2006 Mar 17.

49.

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.

Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, Kurata N, Lambert G, Galbraith DW, Arumuganathan K, Rao K, Walling JG, Gill N, Yu Y, SanMiguel P, Soderlund C, Jackson S, Wing RA.

Genome Res. 2006 Jan;16(1):140-7. Epub 2005 Dec 12.

50.

Cell type-specific characterization of nuclear DNA contents within complex tissues and organs.

Zhang C, Gong FC, Lambert GM, Galbraith DW.

Plant Methods. 2005 Oct 4;1(1):7.

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