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Items: 20

1.

Application of a Neural Network Whole Transcriptome-Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers.

Grewal JK, Tessier-Cloutier B, Jones M, Gakkhar S, Ma Y, Moore R, Mungall AJ, Zhao Y, Taylor MD, Gelmon K, Lim H, Renouf D, Laskin J, Marra M, Yip S, Jones SJM.

JAMA Netw Open. 2019 Apr 5;2(4):e192597. doi: 10.1001/jamanetworkopen.2019.2597.

2.

A network model for control of dengue epidemic using sterile insect technique.

Mishra A, Ambrosio B, Gakkhar S, Aziz-Alaoui MA.

Math Biosci Eng. 2018 Apr 1;15(2):441-460. doi: 10.3934/mbe.2018020.

3.

A collaborative filtering-based approach to biomedical knowledge discovery.

Lever J, Gakkhar S, Gottlieb M, Rashnavadi T, Lin S, Siu C, Smith M, Jones MR, Krzywinski M, Jones SJM, Wren J.

Bioinformatics. 2018 Feb 15;34(4):652-659. doi: 10.1093/bioinformatics/btx613.

PMID:
29028901
4.

Characterization of the human thyroid epigenome.

Siu C, Wiseman S, Gakkhar S, Heravi-Moussavi A, Bilenky M, Carles A, Sierocinski T, Tam A, Zhao E, Kasaian K, Moore RA, Mungall AJ, Walker B, Thomson T, Marra MA, Hirst M, Jones SJM.

J Endocrinol. 2017 Nov;235(2):153-165. doi: 10.1530/JOE-17-0145. Epub 2017 Aug 14.

PMID:
28808080
5.

Nucleosome Density ChIP-Seq Identifies Distinct Chromatin Modification Signatures Associated with MNase Accessibility.

Lorzadeh A, Bilenky M, Hammond C, Knapp DJHF, Li L, Miller PH, Carles A, Heravi-Moussavi A, Gakkhar S, Moksa M, Eaves CJ, Hirst M.

Cell Rep. 2016 Nov 15;17(8):2112-2124. doi: 10.1016/j.celrep.2016.10.055.

6.

Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks.

Pellacani D, Bilenky M, Kannan N, Heravi-Moussavi A, Knapp DJHF, Gakkhar S, Moksa M, Carles A, Moore R, Mungall AJ, Marra MA, Jones SJM, Aparicio S, Hirst M, Eaves CJ.

Cell Rep. 2016 Nov 15;17(8):2060-2074. doi: 10.1016/j.celrep.2016.10.058.

7.

Comparative Genome and Network Centrality Analysis to Identify Drug Targets of Mycobacterium tuberculosis H37Rv.

Melak T, Gakkhar S.

Biomed Res Int. 2015;2015:212061. doi: 10.1155/2015/212061. Epub 2015 Nov 5.

8.

Maximum flow approach to prioritize potential drug targets of Mycobacterium tuberculosis H37Rv from protein-protein interaction network.

Melak T, Gakkhar S.

Clin Transl Med. 2015 Dec;4(1):61. doi: 10.1186/s40169-015-0061-6. Epub 2015 Jun 5.

9.

Potential non homologous protein targets of mycobacterium tuberculosis H37Rv identified from protein-protein interaction network.

Melak T, Gakkhar S.

J Theor Biol. 2014 Nov 21;361:152-8. doi: 10.1016/j.jtbi.2014.07.031. Epub 2014 Aug 5.

PMID:
25106794
10.

Modeling the dynamics of hepatitis C virus with combined antiviral drug therapy: interferon and ribavirin.

Banerjee S, Keval R, Gakkhar S.

Math Biosci. 2013 Oct;245(2):235-48. doi: 10.1016/j.mbs.2013.07.005. Epub 2013 Jul 25.

PMID:
23891586
11.

Complex behaviour in four species food-web model.

Gakkhar S, Priyadarshi A, Banerjee S.

J Biol Dyn. 2012;6:440-56. doi: 10.1080/17513758.2011.618547. Epub 2011 Sep 27.

PMID:
22873599
12.

HORIBALFRE program: Higher Order Residue Interactions Based ALgorithm for Fold REcognition.

Sundaramurthy P, Sreenivasan R, Shameer K, Gakkhar S, Sowdhamini R.

Bioinformation. 2011;7(7):352-9. Epub 2011 Dec 10.

13.

Lose and gain: impacts of ERK5 and JNK cascades on each other.

Pandurangan S, Gakkhar S.

Syst Synth Biol. 2010 Jun;4(2):125-32. doi: 10.1007/s11693-010-9061-4. Epub 2010 Jul 29.

14.

Dynamic modeling and simulation of JNK and P38 kinase cascades with feedbacks and crosstalks.

Sundaramurthy P, Gakkhar S.

IEEE Trans Nanobioscience. 2010 Dec;9(4):225-31. doi: 10.1109/TNB.2010.2061863. Epub 2010 Aug 19.

PMID:
20729175
15.

HORI: a web server to compute Higher Order Residue Interactions in protein structures.

Sundaramurthy P, Shameer K, Sreenivasan R, Gakkhar S, Sowdhamini R.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S24. doi: 10.1186/1471-2105-11-S1-S24.

16.

Polynomialized model for critical DO deficit.

Bhargava DS, Tyagi B, Gakkhar S.

J Environ Sci Eng. 2008 Jul;50(3):223-6. Erratum in: J Environ Sci Eng. 2008 Oct;50(4):following 328.

PMID:
19552077
17.

Modified scheme for one-dimensional BOD-DO models.

Tyagi B, Gakkhar S, Bhargava DS.

J Environ Sci Eng. 2009 Apr;51(2):145-50.

PMID:
21114169
18.

Computational prediction and analysis of impact of the cross-talks between JNK and P38 kinase cascades.

Sundaramurthy P, Gakkhar S, Sowdhamini R.

Bioinformation. 2009;3(6):250-4. Epub 2009 Jan 12.

19.

Analysis of the impact of ERK5, JNK, and P38 kinase cascades on each other: a systems approach.

Sundaramurthy P, Gakkhar S, Sowdhamini R.

Bioinformation. 2009;3(6):244-9. Epub 2009 Jan 12.

20.

Dynamical behavior of two predators competing over a single prey.

Gakkhar S, Singh B, Naji RK.

Biosystems. 2007 Nov-Dec;90(3):808-17. Epub 2007 Apr 29.

PMID:
17574733

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