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Items: 44

1.

The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection.

Edwards VL, Smith SB, McComb EJ, Tamarelle J, Ma B, Humphrys MS, Gajer P, Gwilliam K, Schaefer AM, Lai SK, Terplan M, Mark KS, Brotman RM, Forney LJ, Bavoil PM, Ravel J.

MBio. 2019 Aug 13;10(4). pii: e01548-19. doi: 10.1128/mBio.01548-19.

2.

Vaginal microbiota and mucosal pharmacokinetics of tenofovir in healthy women using tenofovir and tenofovir/levonorgestrel vaginal rings.

Thurman AR, Schwartz JL, Ravel J, Gajer P, Marzinke MA, Yousefieh N, Anderson SM, Doncel GF.

PLoS One. 2019 May 20;14(5):e0217229. doi: 10.1371/journal.pone.0217229. eCollection 2019.

3.

Cervicovaginal microbiota and local immune response modulate the risk of spontaneous preterm delivery.

Elovitz MA, Gajer P, Riis V, Brown AG, Humphrys MS, Holm JB, Ravel J.

Nat Commun. 2019 Mar 21;10(1):1305. doi: 10.1038/s41467-019-09285-9.

4.

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform.

Holm JB, Humphrys MS, Robinson CK, Settles ML, Ott S, Fu L, Yang H, Gajer P, He X, McComb E, Gravitt PE, Ghanem KG, Brotman RM, Ravel J.

mSystems. 2019 Feb 19;4(1). pii: e00029-19. doi: 10.1128/mSystems.00029-19. eCollection 2019 Jan-Feb.

5.

Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants.

Ma B, McComb E, Gajer P, Yang H, Humphrys M, Okogbule-Wonodi AC, Fasano A, Ravel J, Viscardi RM.

Front Microbiol. 2018 Nov 14;9:2755. doi: 10.3389/fmicb.2018.02755. eCollection 2018.

6.

Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility.

Joag V, Obila O, Gajer P, Scott MC, Dizzell S, Humphrys M, Shahabi K, Huibner S, Shannon B, Tharao W, Mureithi M, Oyugi J, Kimani J, Kaushic C, Ravel J, Anzala O, Kaul R.

Clin Infect Dis. 2019 May 2;68(10):1675-1683. doi: 10.1093/cid/ciy762.

7.

Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy.

Brotman RM, Shardell MD, Gajer P, Fadrosh D, Chang K, Silver MI, Viscidi RP, Burke AE, Ravel J, Gravitt PE.

Menopause. 2018 Nov;25(11):1321-1330. doi: 10.1097/GME.0000000000001236.

PMID:
30358729
8.

Comparative phase I randomized open-label pilot clinical trial of Gynophilus® (Lcr regenerans®) immediate release capsules versus slow release muco-adhesive tablets.

Dausset C, Patrier S, Gajer P, Thoral C, Lenglet Y, Cardot JM, Judlin P, Ravel J, Nivoliez A.

Eur J Clin Microbiol Infect Dis. 2018 Oct;37(10):1869-1880. doi: 10.1007/s10096-018-3321-8. Epub 2018 Jul 21.

9.

Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates.

Girard L, Birse K, Holm JB, Gajer P, Humphrys MS, Garber D, Guenthner P, Noël-Romas L, Abou M, McCorrister S, Westmacott G, Wang L, Rohan LC, Matoba N, McNicholl J, Palmer KE, Ravel J, Burgener AD.

Sci Rep. 2018 May 23;8(1):8059. doi: 10.1038/s41598-018-26313-8.

10.

A retrospective pilot study to determine whether the reproductive tract microbiota differs between women with a history of infertility and fertile women.

Wee BA, Thomas M, Sweeney EL, Frentiu FD, Samios M, Ravel J, Gajer P, Myers G, Timms P, Allan JA, Huston WM.

Aust N Z J Obstet Gynaecol. 2018 Jun;58(3):341-348. doi: 10.1111/ajo.12754. Epub 2017 Dec 26.

PMID:
29280134
11.

Group B Streptococcus and the Vaginal Microbiota.

Rosen GH, Randis TM, Desai PV, Sapra KJ, Ma B, Gajer P, Humphrys MS, Ravel J, Gelber SE, Ratner AJ.

J Infect Dis. 2017 Sep 15;216(6):744-751. doi: 10.1093/infdis/jix395.

12.

Distinct Effects of the Cervicovaginal Microbiota and Herpes Simplex Type 2 Infection on Female Genital Tract Immunology.

Shannon B, Gajer P, Yi TJ, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Kaul R.

J Infect Dis. 2017 May 1;215(9):1366-1375. doi: 10.1093/infdis/jix088.

13.

Association of HPV infection and clearance with cervicovaginal immunology and the vaginal microbiota.

Shannon B, Yi TJ, Perusini S, Gajer P, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Rebbapragada A, Kaul R.

Mucosal Immunol. 2017 Sep;10(5):1310-1319. doi: 10.1038/mi.2016.129. Epub 2017 Jan 25.

14.

Modeling the integration of bacterial rRNA fragments into the human cancer genome.

Sieber KB, Gajer P, Dunning Hotopp JC.

BMC Bioinformatics. 2016 Mar 21;17:134. doi: 10.1186/s12859-016-0982-0.

15.

Prevalent high-risk HPV infection and vaginal microbiota in Nigerian women.

Dareng EO, Ma B, Famooto AO, Adebamowo SN, Offiong RA, Olaniyan O, Dakum PS, Wheeler CM, Fadrosh D, Yang H, Gajer P, Brotman RM, Ravel J, Adebamowo CA.

Epidemiol Infect. 2016 Jan;144(1):123-37. doi: 10.1017/S0950268815000965. Epub 2015 Jun 11.

16.

Chlamydia caviae infection alters abundance but not composition of the guinea pig vaginal microbiota.

Neuendorf E, Gajer P, Bowlin AK, Marques PX, Ma B, Yang H, Fu L, Humphrys MS, Forney LJ, Myers GS, Bavoil PM, Rank RG, Ravel J.

Pathog Dis. 2015 Jun;73(4). pii: ftv019. doi: 10.1093/femspd/ftv019. Epub 2015 Mar 10.

17.

The vaginal microbiota over an 8- to 10-year period in a cohort of HIV-infected and HIV-uninfected women.

Mehta SD, Donovan B, Weber KM, Cohen M, Ravel J, Gajer P, Gilbert D, Burgad D, Spear GT.

PLoS One. 2015 Feb 12;10(2):e0116894. doi: 10.1371/journal.pone.0116894. eCollection 2015.

18.

An effective intervention to reduce intravaginal practices among HIV-1 uninfected Kenyan women.

Sivapalasingam S, McClelland RS, Ravel J, Ahmed A, Cleland CM, Gajer P, Mwamzaka M, Marshed F, Shafi J, Masese L, Fajans M, Anderson ME, Jaoko W, Kurth AE.

AIDS Res Hum Retroviruses. 2014 Nov;30(11):1046-54. doi: 10.1089/aid.2013.0251. Epub 2014 Sep 29.

19.

Association between cigarette smoking and the vaginal microbiota: a pilot study.

Brotman RM, He X, Gajer P, Fadrosh D, Sharma E, Mongodin EF, Ravel J, Glover ED, Rath JM.

BMC Infect Dis. 2014 Aug 28;14:471. doi: 10.1186/1471-2334-14-471.

20.

Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes.

Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, Abazashvili N, Kekelidze M, Tsanava S, Imnadze P, Ganz HH, Getz WM, Pearson O, Gajer P, Eppinger M, Ravel J, Wagner DM, Okinaka RT, Schupp JM, Keim P, Pearson T.

PLoS One. 2014 Jul 21;9(7):e102651. doi: 10.1371/journal.pone.0102651. eCollection 2014.

21.

The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term.

Romero R, Hassan SS, Gajer P, Tarca AL, Fadrosh DW, Bieda J, Chaemsaithong P, Miranda J, Chaiworapongsa T, Ravel J.

Microbiome. 2014 May 27;2:18. doi: 10.1186/2049-2618-2-18. eCollection 2014.

22.

Interplay between the temporal dynamics of the vaginal microbiota and human papillomavirus detection.

Brotman RM, Shardell MD, Gajer P, Tracy JK, Zenilman JM, Ravel J, Gravitt PE.

J Infect Dis. 2014 Dec 1;210(11):1723-33. doi: 10.1093/infdis/jiu330. Epub 2014 Jun 18.

23.

Correction: The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women.

Romero R, Hassan SS, Gajer P, Tarca AL, Fadrosh DW, Nikita L, Galuppi M, Lamont RF, Chaemsaithong P, Miranda J, Chaiworapongsa T, Ravel J.

Microbiome. 2014 Apr 15;2(1):10. doi: 10.1186/2049-2618-2-10. No abstract available.

24.

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform.

Fadrosh DW, Ma B, Gajer P, Sengamalay N, Ott S, Brotman RM, Ravel J.

Microbiome. 2014 Feb 24;2(1):6. doi: 10.1186/2049-2618-2-6.

25.

The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women.

Romero R, Hassan SS, Gajer P, Tarca AL, Fadrosh DW, Nikita L, Galuppi M, Lamont RF, Chaemsaithong P, Miranda J, Chaiworapongsa T, Ravel J.

Microbiome. 2014 Feb 3;2(1):4. doi: 10.1186/2049-2618-2-4.

26.

Daily temporal dynamics of vaginal microbiota before, during and after episodes of bacterial vaginosis.

Ravel J, Brotman RM, Gajer P, Ma B, Nandy M, Fadrosh DW, Sakamoto J, Koenig SS, Fu L, Zhou X, Hickey RJ, Schwebke JR, Forney LJ.

Microbiome. 2013 Dec 2;1(1):29. doi: 10.1186/2049-2618-1-29.

27.

Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy.

Brotman RM, Shardell MD, Gajer P, Fadrosh D, Chang K, Silver MI, Viscidi RP, Burke AE, Ravel J, Gravitt PE.

Menopause. 2014 May;21(5):450-8. doi: 10.1097/GME.0b013e3182a4690b.

28.

Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study.

Flores R, Shi J, Fuhrman B, Xu X, Veenstra TD, Gail MH, Gajer P, Ravel J, Goedert JJ.

J Transl Med. 2012 Dec 21;10:253. doi: 10.1186/1479-5876-10-253.

29.

Twice-daily application of HIV microbicides alter the vaginal microbiota.

Ravel J, Gajer P, Fu L, Mauck CK, Koenig SS, Sakamoto J, Motsinger-Reif AA, Doncel GF, Zeichner SL.

MBio. 2012 Dec 18;3(6). pii: e00370-12. doi: 10.1128/mBio.00370-12.

30.

Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women.

Brotman RM, Bradford LL, Conrad M, Gajer P, Ault K, Peralta L, Forney LJ, Carlton JM, Abdo Z, Ravel J.

Sex Transm Dis. 2012 Oct;39(10):807-12.

31.

Association of fecal microbial diversity and taxonomy with selected enzymatic functions.

Flores R, Shi J, Gail MH, Gajer P, Ravel J, Goedert JJ.

PLoS One. 2012;7(6):e39745. doi: 10.1371/journal.pone.0039745. Epub 2012 Jun 28.

32.

Comparison of storage conditions for human vaginal microbiome studies.

Bai G, Gajer P, Nandy M, Ma B, Yang H, Sakamoto J, Blanchard MH, Ravel J, Brotman RM.

PLoS One. 2012;7(5):e36934. doi: 10.1371/journal.pone.0036934. Epub 2012 May 24.

33.

Temporal dynamics of the human vaginal microbiota.

Gajer P, Brotman RM, Bai G, Sakamoto J, Schütte UM, Zhong X, Koenig SS, Fu L, Ma ZS, Zhou X, Abdo Z, Forney LJ, Ravel J.

Sci Transl Med. 2012 May 2;4(132):132ra52. doi: 10.1126/scitranslmed.3003605.

34.

Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants.

Sellitto M, Bai G, Serena G, Fricke WF, Sturgeon C, Gajer P, White JR, Koenig SS, Sakamoto J, Boothe D, Gicquelais R, Kryszak D, Puppa E, Catassi C, Ravel J, Fasano A.

PLoS One. 2012;7(3):e33387. doi: 10.1371/journal.pone.0033387. Epub 2012 Mar 14.

35.

Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences.

Flores R, Shi J, Gail MH, Gajer P, Ravel J, Goedert JJ.

Eur J Clin Invest. 2012 Aug;42(8):855-63. doi: 10.1111/j.1365-2362.2012.02659.x. Epub 2012 Mar 3.

36.

Moving pictures of the human microbiome.

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R.

Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50.

37.

Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth.

Zhou X, Brotman RM, Gajer P, Abdo Z, Schüette U, Ma S, Ravel J, Forney LJ.

Infect Dis Obstet Gynecol. 2010;2010:737425. doi: 10.1155/2010/737425. Epub 2010 Dec 9. Review.

38.

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray.

Schatz MC, Phillippy AM, Gajer P, DeSantis TZ, Andersen GL, Ravel J.

Appl Environ Microbiol. 2010 Aug;76(16):5636-8. doi: 10.1128/AEM.00303-10. Epub 2010 Jun 25.

39.

Vaginal microbiome of reproductive-age women.

Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4680-7. doi: 10.1073/pnas.1002611107. Epub 2010 Jun 3.

40.

Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis.

Forney LJ, Gajer P, Williams CJ, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Brotman RM, Davis CC, Ault K, Ravel J.

J Clin Microbiol. 2010 May;48(5):1741-8. doi: 10.1128/JCM.01710-09. Epub 2010 Mar 3.

41.

Pre-Columbian origins for North American anthrax.

Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Chung WK, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, Keim P.

PLoS One. 2009;4(3):e4813. doi: 10.1371/journal.pone.0004813. Epub 2009 Mar 13. Erratum in: PLoS One.2009;4(5):10.1371/annotation/9e8af820-8037-4f98-86b3-6581e16c2ae6. Jiang, Lingxia [added]; Gajer, Pawel [added]; Trim, Carla P [corrected to Trim, Carla B].

42.

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J.

J Bacteriol. 2008 Oct;190(20):6881-93. doi: 10.1128/JB.00619-08. Epub 2008 Aug 1.

43.

Automated correction of genome sequence errors.

Gajer P, Schatz M, Salzberg SL.

Nucleic Acids Res. 2004 Jan 26;32(2):562-9. Print 2004.

44.

GSK-3 kinases enhance calcineurin signaling by phosphorylation of RCNs.

Hilioti Z, Gallagher DA, Low-Nam ST, Ramaswamy P, Gajer P, Kingsbury TJ, Birchwood CJ, Levchenko A, Cunningham KW.

Genes Dev. 2004 Jan 1;18(1):35-47. Epub 2003 Dec 30.

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