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The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.

Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.


Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS.

PLoS Genet. 2014 Apr 17;10(4):e1004261. doi: 10.1371/journal.pgen.1004261. eCollection 2014 Apr.


pH signaling in human fungal pathogens: a new target for antifungal strategies.

Cornet M, Gaillardin C.

Eukaryot Cell. 2014 Mar;13(3):342-52. doi: 10.1128/EC.00313-13. Epub 2014 Jan 17. Review. Erratum in: Eukaryot Cell. 2014 May;13(5):691.


Comparative physiology of oleaginous species from the Yarrowia clade.

Michely S, Gaillardin C, Nicaud JM, Neuvéglise C.

PLoS One. 2013 May 7;8(5):e63356. doi: 10.1371/journal.pone.0063356. Print 2013.


Yarrowia lipolytica: safety assessment of an oleaginous yeast with a great industrial potential.

Groenewald M, Boekhout T, Neuvéglise C, Gaillardin C, van Dijck PW, Wyss M.

Crit Rev Microbiol. 2014 Aug;40(3):187-206. doi: 10.3109/1040841X.2013.770386. Epub 2013 Mar 14. Review.


Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization.

Louis VL, Despons L, Friedrich A, Martin T, Durrens P, Casarégola S, Neuvéglise C, Fairhead C, Marck C, Cruz JA, Straub ML, Kugler V, Sacerdot C, Uzunov Z, Thierry A, Weiss S, Bleykasten C, De Montigny J, Jacques N, Jung P, Lemaire M, Mallet S, Morel G, Richard GF, Sarkar A, Savel G, Schacherer J, Seret ML, Talla E, Samson G, Jubin C, Poulain J, Vacherie B, Barbe V, Pelletier E, Sherman DJ, Westhof E, Weissenbach J, Baret PV, Wincker P, Gaillardin C, Dujon B, Souciet JL.

G3 (Bethesda). 2012 Feb;2(2):299-311. doi: 10.1534/g3.111.000745. Epub 2012 Feb 1.


Alternative splicing regulates targeting of malate dehydrogenase in Yarrowia lipolytica.

Kabran P, Rossignol T, Gaillardin C, Nicaud JM, Neuvéglise C.

DNA Res. 2012 Jun;19(3):231-44. doi: 10.1093/dnares/dss007. Epub 2012 Feb 24.


Mitochondrial genomes of yeasts of the Yarrowia clade.

Gaillardin C, Neuvéglise C, Kerscher S, Nicaud JM.

FEMS Yeast Res. 2012 May;12(3):317-31. doi: 10.1111/j.1567-1364.2011.00782.x. Epub 2012 Jan 18.


Deciphering the hybridisation history leading to the Lager lineage based on the mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380.

Nguyen HV, Legras JL, Neuvéglise C, Gaillardin C.

PLoS One. 2011;6(10):e25821. doi: 10.1371/journal.pone.0025821. Epub 2011 Oct 5.


The intronome of budding yeasts.

Neuvéglise C, Marck C, Gaillardin C.

C R Biol. 2011 Aug-Sep;334(8-9):662-70. doi: 10.1016/j.crvi.2011.05.015. Epub 2011 Jul 6. Review.


An overview of lipid metabolism in yeasts and its impact on biotechnological processes.

Beopoulos A, Nicaud JM, Gaillardin C.

Appl Microbiol Biotechnol. 2011 May;90(4):1193-206. doi: 10.1007/s00253-011-3212-8. Epub 2011 Mar 31. Review.


Molecular identification of closely related Candida species using two ribosomal intergenic spacer fingerprinting methods.

Cornet M, Sendid B, Fradin C, Gaillardin C, Poulain D, Nguyen HV.

J Mol Diagn. 2011 Jan;13(1):12-22. doi: 10.1016/j.jmoldx.2010.11.014. Epub 2010 Dec 23.


Yeasts as a model for human diseases.

Bolotin-Fukuhara M, Dumas B, Gaillardin C.

FEMS Yeast Res. 2010 Dec;10(8):959-60. doi: 10.1111/j.1567-1364.2010.00693.x. No abstract available.


The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications.

Falentin H, Deutsch SM, Jan G, Loux V, Thierry A, Parayre S, Maillard MB, Dherbécourt J, Cousin FJ, Jardin J, Siguier P, Couloux A, Barbe V, Vacherie B, Wincker P, Gibrat JF, Gaillardin C, Lortal S.

PLoS One. 2010 Jul 23;5(7):e11748. doi: 10.1371/journal.pone.0011748.


Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts.

Mekouar M, Blanc-Lenfle I, Ozanne C, Da Silva C, Cruaud C, Wincker P, Gaillardin C, Neuvéglise C.

Genome Biol. 2010;11(6):R65. doi: 10.1186/gb-2010-11-6-r65. Epub 2010 Jun 23.


Comparative genomics of protoploid Saccharomycetaceae.

Génolevures Consortium, Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E.

Genome Res. 2009 Oct;19(10):1696-709. doi: 10.1101/gr.091546.109. Epub 2009 Jun 12.


The homologue of the Saccharomyces cerevisiae RIM9 gene is required for ambient pH signalling in Candida albicans.

Cornet M, Richard ML, Gaillardin C.

Res Microbiol. 2009 Apr;160(3):219-23. doi: 10.1016/j.resmic.2009.02.002. Epub 2009 Feb 20.


Heterologous expression and characterization of a beta-1,6-glucanase from Aspergillus fumigatus.

Boisramé A, Gaillardin C.

Appl Microbiol Biotechnol. 2009 Mar;82(4):663-9. doi: 10.1007/s00253-008-1780-z. Epub 2008 Nov 28.


Dicistronic tRNA-5S rRNA genes in Yarrowia lipolytica: an alternative TFIIIA-independent way for expression of 5S rRNA genes.

Acker J, Ozanne C, Kachouri-Lafond R, Gaillardin C, Neuvéglise C, Marck C.

Nucleic Acids Res. 2008 Oct;36(18):5832-44. doi: 10.1093/nar/gkn549. Epub 2008 Sep 12.


Functional analysis of Candida albicans GPI-anchored proteins: roles in cell wall integrity and caspofungin sensitivity.

Plaine A, Walker L, Da Costa G, Mora-Montes HM, McKinnon A, Gow NA, Gaillardin C, Munro CA, Richard ML.

Fungal Genet Biol. 2008 Oct;45(10):1404-14. doi: 10.1016/j.fgb.2008.08.003. Epub 2008 Aug 15.


The complete mitochondrial genome of yarrowia lipolytica.

Kerscher S, Durstewitz G, Casaregola S, Gaillardin C, Brandt U.

Comp Funct Genomics. 2001;2(2):80-90. doi: 10.1002/cfg.72.


Ambient pH signalling in the yeast Yarrowia lipolytica involves YlRim23p/PalC, which interacts with Snf7p/Vps32p, but does not require the long C terminus of YlRim9p/PalI.

Blanchin-Roland S, Da Costa G, Gaillardin C.

Microbiology. 2008 Jun;154(Pt 6):1668-1676. doi: 10.1099/mic.0.2008/017046-0.


Functional analysis of the MATB mating-type idiomorph of the dimorphic fungus Yarrowia lipolytica.

Rosas-Quijano R, Gaillardin C, Ruiz-Herrera J.

Curr Microbiol. 2008 Aug;57(2):115-20. doi: 10.1007/s00284-008-9162-4. Epub 2008 May 7.


Enhanced proinflammatory response to the Candida albicans gpi7 null mutant by murine cells.

Plaine A, Yáñez A, Murciano C, Gaillardin C, Gil ML, Richard ML, Gozalbo D.

Microbes Infect. 2008 Apr;10(4):382-9. doi: 10.1016/j.micinf.2007.12.018. Epub 2008 Jan 9.


Deletions of the endocytic components VPS28 and VPS32 in Candida albicans lead to echinocandin and azole hypersensitivity.

Cornet M, Gaillardin C, Richard ML.

Antimicrob Agents Chemother. 2006 Oct;50(10):3492-5.


Candida albicans VAC8 is required for vacuolar inheritance and normal hyphal branching.

Barelle CJ, Richard ML, Gaillardin C, Gow NA, Brown AJ.

Eukaryot Cell. 2006 Feb;5(2):359-67.


Deletions of endocytic components VPS28 and VPS32 affect growth at alkaline pH and virulence through both RIM101-dependent and RIM101-independent pathways in Candida albicans.

Cornet M, Bidard F, Schwarz P, Da Costa G, Blanchin-Roland S, Dromer F, Gaillardin C.

Infect Immun. 2005 Dec;73(12):7977-87.


ESCRT-I components of the endocytic machinery are required for Rim101-dependent ambient pH regulation in the yeast Yarrowia lipolytica.

Blanchin-Roland S, Costa GD, Gaillardin C.

Microbiology. 2005 Nov;151(Pt 11):3627-3637. doi: 10.1099/mic.0.28196-0.


New yeast expression platforms based on methylotrophic Hansenula polymorpha and Pichia pastoris and on dimorphic Arxula adeninivorans and Yarrowia lipolytica - a comparison.

Gellissen G, Kunze G, Gaillardin C, Cregg JM, Berardi E, Veenhuis M, van der Klei I.

FEMS Yeast Res. 2005 Nov;5(11):1079-96. Epub 2005 Aug 24. Review.


Gradual genome stabilisation by progressive reduction of the Saccharomyces uvarum genome in an interspecific hybrid with Saccharomyces cerevisiae.

Antunovics Z, Nguyen HV, Gaillardin C, Sipiczki M.

FEMS Yeast Res. 2005 Dec;5(12):1141-50. Epub 2005 Jun 15.


Heterologous production of a laccase from the basidiomycete Pycnoporus cinnabarinus in the dimorphic yeast Yarrowia lipolytica.

Madzak C, Otterbein L, Chamkha M, Moukha S, Asther M, Gaillardin C, Beckerich JM.

FEMS Yeast Res. 2005 Apr;5(6-7):635-46.


Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings.

Neuvéglise C, Chalvet F, Wincker P, Gaillardin C, Casaregola S.

Eukaryot Cell. 2005 Mar;4(3):615-24.


Identification and characterisation of LIP7 and LIP8 genes encoding two extracellular triacylglycerol lipases in the yeast Yarrowia lipolytica.

Fickers P, Fudalej F, Le Dall MT, Casaregola S, Gaillardin C, Thonart P, Nicaud JM.

Fungal Genet Biol. 2005 Mar;42(3):264-74. Epub 2005 Jan 26.


CYGD: the Comprehensive Yeast Genome Database.

Güldener U, Münsterkötter M, Kastenmüller G, Strack N, van Helden J, Lemer C, Richelles J, Wodak SJ, García-Martínez J, Pérez-Ortín JE, Michael H, Kaps A, Talla E, Dujon B, André B, Souciet JL, De Montigny J, Bon E, Gaillardin C, Mewes HW.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D364-8.


CandidaDB: a genome database for Candida albicans pathogenomics.

d'Enfert C, Goyard S, Rodriguez-Arnaveilhe S, Frangeul L, Jones L, Tekaia F, Bader O, Albrecht A, Castillo L, Dominguez A, Ernst JF, Fradin C, Gaillardin C, Garcia-Sanchez S, de Groot P, Hube B, Klis FM, Krishnamurthy S, Kunze D, Lopez MC, Mavor A, Martin N, Moszer I, Onésime D, Perez Martin J, Sentandreu R, Valentin E, Brown AJ.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D353-7.


Candida famata (Debaryomyces hansenii) DNA sequences containing genes involved in riboflavin synthesis.

Voronovsky AY, Abbas CA, Dmytruk KV, Ishchuk OP, Kshanovska BV, Sybirna KA, Gaillardin C, Sibirny AA.

Yeast. 2004 Nov;21(15):1307-16.


Inactivation of CaMIT1 inhibits Candida albicans phospholipomannan beta-mannosylation, reduces virulence, and alters cell wall protein beta-mannosylation.

Mille C, Janbon G, Delplace F, Ibata-Ombetta S, Gaillardin C, Strecker G, Jouault T, Trinel PA, Poulain D.

J Biol Chem. 2004 Nov 12;279(46):47952-60. Epub 2004 Sep 3.


Genome evolution in yeasts.

Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL.

Nature. 2004 Jul 1;430(6995):35-44.


Heterologous protein expression and secretion in the non-conventional yeast Yarrowia lipolytica: a review.

Madzak C, Gaillardin C, Beckerich JM.

J Biotechnol. 2004 Apr 8;109(1-2):63-81. Review.


Carbon and nitrogen sources modulate lipase production in the yeast Yarrowia lipolytica.

Fickers P, Nicaud JM, Gaillardin C, Destain J, Thonart P.

J Appl Microbiol. 2004;96(4):742-9.


Identification of an UDP-Glc:glycoprotein glucosyltransferase in the yeast Yarrowia lipolytica.

Babour A, Beckerich JM, Gaillardin C.

Yeast. 2004 Jan 15;21(1):11-24.


Evolution of the MAT locus and its Ho endonuclease in yeast species.

Butler G, Kenny C, Fagan A, Kurischko C, Gaillardin C, Wolfe KH.

Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1632-7. Epub 2004 Jan 26.


New disruption cassettes for rapid gene disruption and marker rescue in the yeast Yarrowia lipolytica.

Fickers P, Le Dall MT, Gaillardin C, Thonart P, Nicaud JM.

J Microbiol Methods. 2003 Dec;55(3):727-37.


Chromosomal polymorphism in the yeast species Debaryomyces hansenii.

Corredor M, Davila AM, Casarégola S, Gaillardin C.

Antonie Van Leeuwenhoek. 2003;84(2):81-8.


Sequence analysis of three mitochondrial DNA molecules reveals interesting differences among Saccharomyces yeasts.

Langkjaer RB, Casaregola S, Ussery DW, Gaillardin C, Piskur J.

Nucleic Acids Res. 2003 Jun 15;31(12):3081-91.


Chromosomal polymorphism in the yeast species Debaryomyces hansenii.

Corredor M, Davila AM, Casarégola S, Gaillardin C.

Antonie Van Leeuwenhoek. 2003;83(3):215-22.


Hyperthermostabilization of Bacillus licheniformis alpha-amylase and modulation of its stability over a 50 degrees C temperature range.

Declerck N, Machius M, Joyet P, Wiegand G, Huber R, Gaillardin C.

Protein Eng. 2003 Apr;16(4):287-93.


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