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Items: 25

1.

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.

Tkavc R, Matrosova VY, Grichenko OE, Gostinčar C, Volpe RP, Klimenkova P, Gaidamakova EK, Zhou CE, Stewart BJ, Lyman MG, Malfatti SA, Rubinfeld B, Courtot M, Singh J, Dalgard CL, Hamilton T, Frey KG, Gunde-Cimerman N, Dugan L, Daly MJ.

Front Microbiol. 2018 Jan 8;8:2528. doi: 10.3389/fmicb.2017.02528. eCollection 2017.

2.

Microbial cells can cooperate to resist high-level chronic ionizing radiation.

Shuryak I, Matrosova VY, Gaidamakova EK, Tkavc R, Grichenko O, Klimenkova P, Volpe RP, Daly MJ.

PLoS One. 2017 Dec 20;12(12):e0189261. doi: 10.1371/journal.pone.0189261. eCollection 2017.

3.

Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance.

Sharma A, Gaidamakova EK, Grichenko O, Matrosova VY, Hoeke V, Klimenkova P, Conze IH, Volpe RP, Tkavc R, Gostinčar C, Gunde-Cimerman N, DiRuggiero J, Shuryak I, Ozarowski A, Hoffman BM, Daly MJ.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9253-E9260. doi: 10.1073/pnas.1713608114. Epub 2017 Oct 17.

4.

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

Matrosova VY, Gaidamakova EK, Makarova KS, Grichenko O, Klimenkova P, Volpe RP, Tkavc R, Ertem G, Conze IH, Brambilla E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Daligault H, Davenport K, Erkkila T, Goodwin LA, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woolbert M, Gunde-Cimerman N, Wolf YI, Grebenc T, Gostinčar C, Daly MJ.

Stand Genomic Sci. 2017 Jul 28;12:46. doi: 10.1186/s40793-017-0258-y. eCollection 2017.

5.

Deinococcus Mn2+-peptide complex: A novel approach to alphavirus vaccine development.

Gayen M, Gupta P, Morazzani EM, Gaidamakova EK, Knollmann-Ritschel B, Daly MJ, Glass PJ, Maheshwari RK.

Vaccine. 2017 Jun 22;35(29):3672-3681. doi: 10.1016/j.vaccine.2017.05.016. Epub 2017 May 30.

6.

MDP: A Deinococcus Mn2+-Decapeptide Complex Protects Mice from Ionizing Radiation.

Gupta P, Gayen M, Smith JT, Gaidamakova EK, Matrosova VY, Grichenko O, Knollmann-Ritschel B, Daly MJ, Kiang JG, Maheshwari RK.

PLoS One. 2016 Aug 8;11(8):e0160575. doi: 10.1371/journal.pone.0160575. eCollection 2016.

7.

Responses of Mn2+ speciation in Deinococcus radiodurans and Escherichia coli to γ-radiation by advanced paramagnetic resonance methods.

Sharma A, Gaidamakova EK, Matrosova VY, Bennett B, Daly MJ, Hoffman BM.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5945-50. doi: 10.1073/pnas.1303376110. Epub 2013 Mar 27.

8.

Preserving immunogenicity of lethally irradiated viral and bacterial vaccine epitopes using a radio- protective Mn2+-Peptide complex from Deinococcus.

Gaidamakova EK, Myles IA, McDaniel DP, Fowler CJ, Valdez PA, Naik S, Gayen M, Gupta P, Sharma A, Glass PJ, Maheshwari RK, Datta SK, Daly MJ.

Cell Host Microbe. 2012 Jul 19;12(1):117-124. doi: 10.1016/j.chom.2012.05.011.

9.

Effects of Mn and Fe levels on Bacillus subtilis spore resistance and effects of Mn2+, other divalent cations, orthophosphate, and dipicolinic acid on protein resistance to ionizing radiation.

Granger AC, Gaidamakova EK, Matrosova VY, Daly MJ, Setlow P.

Appl Environ Microbiol. 2011 Jan;77(1):32-40. doi: 10.1128/AEM.01965-10. Epub 2010 Nov 5.

10.

Small-molecule antioxidant proteome-shields in Deinococcus radiodurans.

Daly MJ, Gaidamakova EK, Matrosova VY, Kiang JG, Fukumoto R, Lee DY, Wehr NB, Viteri GA, Berlett BS, Levine RL.

PLoS One. 2010 Sep 3;5(9):e12570. doi: 10.1371/journal.pone.0012570.

11.

Protein oxidation: key to bacterial desiccation resistance?

Fredrickson JK, Li SM, Gaidamakova EK, Matrosova VY, Zhai M, Sulloway HM, Scholten JC, Brown MG, Balkwill DL, Daly MJ.

ISME J. 2008 Apr;2(4):393-403. doi: 10.1038/ismej.2007.116. Epub 2008 Feb 14.

PMID:
18273068
12.

Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks.

Makarova KS, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Lapidus A, Copeland A, Kim E, Land M, Mavrommatis K, Pitluck S, Richardson PM, Detter C, Brettin T, Saunders E, Lai B, Ravel B, Kemner KM, Wolf YI, Sorokin A, Gerasimova AV, Gelfand MS, Fredrickson JK, Koonin EV, Daly MJ.

PLoS One. 2007 Sep 26;2(9):e955.

13.

Protein oxidation implicated as the primary determinant of bacterial radioresistance.

Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Leapman RD, Lai B, Ravel B, Li SM, Kemner KM, Fredrickson JK.

PLoS Biol. 2007 Apr;5(4):e92.

14.

Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation.

Qiu X, Daly MJ, Vasilenko A, Omelchenko MV, Gaidamakova EK, Wu L, Zhou J, Sundin GW, Tiedje JM.

J Bacteriol. 2006 Feb;188(3):1199-204.

15.

Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance.

Omelchenko MV, Wolf YI, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Daly MJ, Koonin EV, Makarova KS.

BMC Evol Biol. 2005 Oct 20;5:57.

16.

How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress.

Ghosal D, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Venkateswaran A, Zhai M, Kostandarithes HM, Brim H, Makarova KS, Wackett LP, Fredrickson JK, Daly MJ.

FEMS Microbiol Rev. 2005 Apr;29(2):361-75. Review.

17.

Antisense radiotherapy: targeting full-size mdrl mRNA with 125I-labelled oligonucleotides.

Gaidamakova EK, Neumann RD, Panyutin IG.

Int J Radiat Biol. 2004 Nov-Dec;80(11-12):889-93.

PMID:
15764398
18.

Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance.

Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Venkateswaran A, Hess M, Omelchenko MV, Kostandarithes HM, Makarova KS, Wackett LP, Fredrickson JK, Ghosal D.

Science. 2004 Nov 5;306(5698):1025-8. Epub 2004 Sep 30.

19.

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Liu Y, Zhou J, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J, Wu L, Thompson DK, Xu D, Rogozin IB, Gaidamakova EK, Zhai M, Makarova KS, Koonin EV, Daly MJ.

Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4191-6. Epub 2003 Mar 21.

20.

Site-specific strand breaks in RNA produced by (125)I radiodecay.

Gaidamakova EK, Neumann RD, Panyutin IG.

Nucleic Acids Res. 2002 Nov 15;30(22):4960-5.

21.

[Possibility of using fusion proteins for detection of nonsense mutations and frame-shift mutations in BRCA1 gene].

Gutkina NI, Gaĭdamakova EK, Varlakhanova NV, Kovalenko SP.

Mol Gen Mikrobiol Virusol. 2002;(1):31-6. Russian.

PMID:
11904923
22.

Molecular vehicle for target-mediated delivery of therapeutics and diagnostics.

Gaidamakova EK, Backer MV, Backer JM.

J Control Release. 2001 Jul 6;74(1-3):341-7.

PMID:
11489516
23.

Phenobarbital-dependent protein binding to Barbie box-like sequences in the coding region of cytochrome P450BM-3 gene from Bacillus megaterium.

Gaidamakova EK, Alpatov OV, Ischenko IV, Kovalenko SP, Lyakhovich VV.

Gene. 1996 Dec 12;183(1-2):97-101.

PMID:
8996092
24.

Protein-binding DNA regions inside and in the vicinity of the cytochrome P450bm-3 gene from Bacillus megaterium.

Gaidamakova EK, Karginov VA, Kovalenko SP.

Biochem Biophys Res Commun. 1994 Feb 15;198(3):862-8.

PMID:
8117290
25.

MEC: a transposable element from Chironomus thummi (diptera).

Blinov AG, Sobanov YV, Gaidamakova EK, Bogachev SS, Kolesnikov NN, Filippova MA, Kiknadze II.

Mol Gen Genet. 1991 Sep;229(1):152-4.

PMID:
1654507

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