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Items: 35

1.

Model-based demographic inference of introgression history in European whitefish species pairs'.

Rougeux C, Gagnaire PA, Bernatchez L.

J Evol Biol. 2019 Apr 30. doi: 10.1111/jeb.13482. [Epub ahead of print]

PMID:
31038776
2.

The European sea bass: a key marine fish model in the wild and in aquaculture.

Vandeputte M, Gagnaire PA, Allal F.

Anim Genet. 2019 Jun;50(3):195-206. doi: 10.1111/age.12779. Epub 2019 Mar 18. Review.

PMID:
30883830
3.

Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages.

Riquet F, Liautard-Haag C, Woodall L, Bouza C, Louisy P, Hamer B, Otero-Ferrer F, Aublanc P, Béduneau V, Briard O, El Ayari T, Hochscheid S, Belkhir K, Arnaud-Haond S, Gagnaire PA, Bierne N.

Evolution. 2019 Apr;73(4):817-835. doi: 10.1111/evo.13696. Epub 2019 Mar 11.

PMID:
30854632
4.

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Faggion S, Vandeputte M, Chatain B, Gagnaire PA, Allal F.

Heredity (Edinb). 2019 May;122(5):612-621. doi: 10.1038/s41437-018-0157-z. Epub 2018 Oct 24.

PMID:
30356226
5.

Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata.

Gagnaire PA, Lamy JB, Cornette F, Heurtebise S, Dégremont L, Flahauw E, Boudry P, Bierne N, Lapègue S.

Genome Biol Evol. 2018 Sep 1;10(9):2518-2534. doi: 10.1093/gbe/evy194.

6.

The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies.

Fraïsse C, Roux C, Gagnaire PA, Romiguier J, Faivre N, Welch JJ, Bierne N.

PeerJ. 2018 Jul 30;6:e5198. doi: 10.7717/peerj.5198. eCollection 2018.

7.

Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts.

Leitwein M, Gagnaire PA, Desmarais E, Berrebi P, Guinand B.

Mol Ecol. 2018 Sep;27(17):3466-3483. doi: 10.1111/mec.14816. Epub 2018 Aug 17.

PMID:
30054960
8.

Publisher Correction: The origin and remolding of genomic islands of differentiation in the European sea bass.

Duranton M, Allal F, Fraïsse C, Bierne N, Bonhomme F, Gagnaire PA.

Nat Commun. 2018 Jul 27;9(1):3022. doi: 10.1038/s41467-018-05359-2.

9.

The origin and remolding of genomic islands of differentiation in the European sea bass.

Duranton M, Allal F, Fraïsse C, Bierne N, Bonhomme F, Gagnaire PA.

Nat Commun. 2018 Jun 28;9(1):2518. doi: 10.1038/s41467-018-04963-6. Erratum in: Nat Commun. 2018 Jul 27;9(1):3022.

10.

Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.).

Souissi A, Bonhomme F, Manchado M, Bahri-Sfar L, Gagnaire PA.

Heredity (Edinb). 2018 Dec;121(6):579-593. doi: 10.1038/s41437-018-0079-9. Epub 2018 May 1.

PMID:
29713088
11.

RAD-Seq Reveals Patterns of Additive Polygenic Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata).

Babin C, Gagnaire PA, Pavey SA, Bernatchez L.

Genome Biol Evol. 2017 Nov 1;9(11):2974-2986. doi: 10.1093/gbe/evx226.

12.
13.

Introgressive hybridization and morphological transgression in the contact zone between two Mediterranean Solea species.

Souissi A, Gagnaire PA, Bonhomme F, Bahri-Sfar L.

Ecol Evol. 2017 Feb 3;7(5):1394-1402. doi: 10.1002/ece3.2533. eCollection 2017 Mar.

14.

A Dense Brown Trout (Salmo trutta) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity.

Leitwein M, Guinand B, Pouzadoux J, Desmarais E, Berrebi P, Gagnaire PA.

G3 (Bethesda). 2017 Apr 3;7(4):1365-1376. doi: 10.1534/g3.116.038497.

15.

Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches.

Gagnaire PA, Gaggiotti OE.

Curr Zool. 2016 Dec;62(6):603-616. doi: 10.1093/cz/zow088. Epub 2016 Aug 23.

16.

Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations.

Leitwein M, Gagnaire PA, Desmarais E, Guendouz S, Rohmer M, Berrebi P, Guinand B.

J Fish Biol. 2016 Dec;89(6):2717-2734. doi: 10.1111/jfb.13131. Epub 2016 Sep 25.

PMID:
27666575
17.

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes.

Rougemont Q, Gagnaire PA, Perrier C, Genthon C, Besnard AL, Launey S, Evanno G.

Mol Ecol. 2017 Jan;26(1):142-162. doi: 10.1111/mec.13664. Epub 2016 Jul 12.

PMID:
27105132
18.

Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact.

Le Moan A, Gagnaire PA, Bonhomme F.

Mol Ecol. 2016 Jul;25(13):3187-202. doi: 10.1111/mec.13627. Epub 2016 Jun 6.

PMID:
27027737
19.

Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits.

Szulkin M, Gagnaire PA, Bierne N, Charmantier A.

Mol Ecol. 2016 Jan;25(2):542-58. doi: 10.1111/mec.13486.

PMID:
26800038
20.

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era.

Gagnaire PA, Broquet T, Aurelle D, Viard F, Souissi A, Bonhomme F, Arnaud-Haond S, Bierne N.

Evol Appl. 2015 Sep;8(8):769-86. doi: 10.1111/eva.12288. Epub 2015 Jul 28. Review.

21.

RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish (Coregonus clupeaformis) Species Pairs.

Laporte M, Rogers SM, Dion-Côté AM, Normandeau E, Gagnaire PA, Dalziel AC, Chebib J, Bernatchez L.

G3 (Bethesda). 2015 May 21;5(7):1481-91. doi: 10.1534/g3.115.019067. Erratum in: G3 (Bethesda). 2015 Dec;5(12):2919.

22.

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation.

Tine M, Kuhl H, Gagnaire PA, Louro B, Desmarais E, Martins RS, Hecht J, Knaust F, Belkhir K, Klages S, Dieterich R, Stueber K, Piferrer F, Guinand B, Bierne N, Volckaert FA, Bargelloni L, Power DM, Bonhomme F, Canario AV, Reinhardt R.

Nat Commun. 2014 Dec 23;5:5770. doi: 10.1038/ncomms6770.

23.

Do North Atlantic eels show parallel patterns of spatially varying selection?

Ulrik MG, Pujolar JM, Ferchaud AL, Jacobsen MW, Als TD, Gagnaire PA, Frydenberg J, Bøcher PK, Jónsson B, Bernatchez L, Hansen MM.

BMC Evol Biol. 2014 Jun 20;14:138. doi: 10.1186/1471-2148-14-138.

24.

The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing.

Gagnaire PA, Pavey SA, Normandeau E, Bernatchez L.

Evolution. 2013 Sep;67(9):2483-97. doi: 10.1111/evo.12075. Epub 2013 Mar 9.

PMID:
24033162
25.

Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next-generation sequencing.

Pavey SA, Sevellec M, Adam W, Normandeau E, Lamaze FC, Gagnaire PA, Filteau M, Hebert FO, Maaroufi H, Bernatchez L.

Mol Ecol. 2013 Jul;22(14):3833-49. doi: 10.1111/mec.12358. Epub 2013 Jun 20.

PMID:
23786238
26.

Population genetics of the American eel (Anguilla rostrata): FST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species.

Côté CL, Gagnaire PA, Bourret V, Verreault G, Castonguay M, Bernatchez L.

Mol Ecol. 2013 Apr;22(7):1763-76. doi: 10.1111/mec.12142. Epub 2012 Dec 5.

PMID:
23216918
27.

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis).

Gagnaire PA, Normandeau E, Pavey SA, Bernatchez L.

Mol Ecol. 2013 Jun;22(11):3036-48. doi: 10.1111/mec.12127. Epub 2012 Nov 26.

PMID:
23181719
28.

Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea bream Sparus aurata.

Chaoui L, Gagnaire PA, Guinand B, Quignard JP, Tsigenopoulos C, Kara MH, Bonhomme F.

Mol Ecol. 2012 Nov;21(22):5497-511. doi: 10.1111/mec.12062. Epub 2012 Oct 12.

PMID:
23061421
29.

RNA/DNA ratios in American glass eels (Anguilla rostrata): evidence for latitudinal variation in physiological status and constraints to oceanic migration?

Laflamme S, Côté C, Gagnaire PA, Castonguay M, Bernatchez L.

Ecol Evol. 2012 May;2(5):875-84. doi: 10.1002/ece3.212.

30.

Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels.

Gagnaire PA, Normandeau E, Bernatchez L.

Mol Biol Evol. 2012 Oct;29(10):2909-19. Epub 2012 Feb 23.

PMID:
22362081
31.

The genetic consequences of spatially varying selection in the panmictic American eel (Anguilla rostrata).

Gagnaire PA, Normandeau E, Côté C, Møller Hansen M, Bernatchez L.

Genetics. 2012 Feb;190(2):725-36. doi: 10.1534/genetics.111.134825. Epub 2011 Nov 30.

32.

Within-population structure highlighted by differential introgression across semipermeable barriers to gene flow in Anguilla marmorata.

Gagnaire PA, Minegishi Y, Zenboudji S, Valade P, Aoyama J, Berrebi P.

Evolution. 2011 Dec;65(12):3413-27. doi: 10.1111/j.1558-5646.2011.01404.x. Epub 2011 Aug 2.

PMID:
22133215
33.

Multiplex PCR assay to discriminate four neighbouring species of the Calliptamus genus (Orthoptera: Acrididae) from France.

Blanchet E, Blondin L, Gagnaire PA, Foucart A, Vassal JM, Lecoq M.

Bull Entomol Res. 2010 Dec;100(6):701-6. doi: 10.1017/S0007485310000052. Epub 2010 May 27.

PMID:
20504385
34.

Development of a key using morphological characters to distinguish south-western Indian Ocean anguillid glass eels.

Réveillac E, Gagnaire PA, Lecomte-Finiger R, Berrebi P, Robinet T, Valade P, Feunteun E.

J Fish Biol. 2009 Jun;74(9):2171-7. doi: 10.1111/j.1095-8649.2009.02284.x.

PMID:
20735695
35.

Natural selection influences AFLP intraspecific genetic variability and introgression patterns in Atlantic eels.

Gagnaire PA, Albert V, Jónsson B, Bernatchez L.

Mol Ecol. 2009 Apr;18(8):1678-91. doi: 10.1111/j.1365-294X.2009.04142.x. Epub 2009 Mar 17.

PMID:
19302349

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