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Items: 1 to 50 of 159

1.

Disrupting Fluorescence by Mutagenesis in a Green Fluorescent Fatty Acid Binding Protein from a Marine Eel.

Krivoshik SR, Guarnaccia AM, Fried DB, Gruber DF, Gaffney JP.

Protein J. 2020 Feb 24. doi: 10.1007/s10930-020-09883-3. [Epub ahead of print]

PMID:
32096074
2.

Rumen Bacteria and Serum Metabolites Predictive of Feed Efficiency Phenotypes in Beef Cattle.

Clemmons BA, Martino C, Powers JB, Campagna SR, Voy BH, Donohoe DR, Gaffney J, Embree MM, Myer PR.

Sci Rep. 2019 Dec 17;9(1):19265. doi: 10.1038/s41598-019-55978-y.

3.

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.

Sanders JG, Nurk S, Salido RA, Minich J, Xu ZZ, Zhu Q, Martino C, Fedarko M, Arthur TD, Chen F, Boland BS, Humphrey GC, Brennan C, Sanders K, Gaffney J, Jepsen K, Khosroheidari M, Green C, Liyanage M, Dang JW, Phelan VV, Quinn RA, Bankevich A, Chang JT, Rana TM, Conrad DJ, Sandborn WJ, Smarr L, Dorrestein PC, Pevzner PA, Knight R.

Genome Biol. 2019 Oct 31;20(1):226. doi: 10.1186/s13059-019-1834-9.

4.

Scalable Topological Data Analysis and Visualization for Evaluating Data-Driven Models in Scientific Applications.

Liu S, Gaffney J, Peterson L, Robinson PB, Bhatia H, Pascucci V, Spears BK, Bremer PT, Wang D, Maljovec D, Anirudh R, Thiagarajan JJ, Jacobs SA, Van Essen BC, Hysom D, Yeom JS.

IEEE Trans Vis Comput Graph. 2020 Jan;26(1):291-300. doi: 10.1109/TVCG.2019.2934594. Epub 2019 Aug 30.

PMID:
31484123
5.

Bright Green Biofluorescence in Sharks Derives from Bromo-Kynurenine Metabolism.

Park HB, Lam YC, Gaffney JP, Weaver JC, Krivoshik SR, Hamchand R, Pieribone V, Gruber DF, Crawford JM.

iScience. 2019 Sep 27;19:1291-1336. doi: 10.1016/j.isci.2019.07.019. Epub 2019 Aug 8.

6.

Assessment of blood-brain barrier integrity and neuroinflammation in preeclampsia.

Burwick RM, Togioka BM, Speranza RJ, Gaffney JE, Roberts VHJ, Frias AE, Rincón M.

Am J Obstet Gynecol. 2019 Sep;221(3):269.e1-269.e8. doi: 10.1016/j.ajog.2019.06.024. Epub 2019 Jun 20.

PMID:
31229428
7.

A standardized method for collection of human placenta samples in the age of functional magnetic resonance imaging.

Roberts VH, Gaffney JE, Lewandowski KS, Schabel MC, Morgan TK, Frias AE.

Biotechniques. 2019 Aug;67(2):45-49. doi: 10.2144/btn-2019-0029. Epub 2019 Jun 11.

8.

Maternal High-Fat Diet Consumption and Chronic Hyperandrogenemia Are Associated With Placental Dysfunction in Female Rhesus Macaques.

Kuo K, Roberts VHJ, Gaffney J, Takahashi DL, Morgan T, Lo JO, Stouffer RL, Frias AE.

Endocrinology. 2019 Aug 1;160(8):1937-1949. doi: 10.1210/en.2019-00149.

PMID:
31180495
9.

Conversion of a Conference Room into a Low-Acuity Inpatient Medical Unit: A Creative Response to Influenza-Related Surge.

Fogerty RL, Cabie M, Doyle D, Brien P, Beley P, Jansen L, Stump L, Gaffney J, Ferencz KW, Lourenco C, Cushing W, Williams E, Marseglia J, Martinello RA, Morris V.

Jt Comm J Qual Patient Saf. 2019 Jul;45(7):524-529. doi: 10.1016/j.jcjq.2019.02.004. Epub 2019 Jun 1.

PMID:
31164262
10.

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease.

Mills RH, Vázquez-Baeza Y, Zhu Q, Jiang L, Gaffney J, Humphrey G, Smarr L, Knight R, Gonzalez DJ.

mSystems. 2019 Feb 12;4(1). pii: e00337-18. doi: 10.1128/mSystems.00337-18. eCollection 2019 Jan-Feb.

11.

Decreasing Unplanned Office Visits Due to Cast Problems in the Pediatric Population.

Newman SL, Gaffney JT.

Pediatr Qual Saf. 2018 Oct 9;3(5):e111. doi: 10.1097/pq9.0000000000000111. eCollection 2018 Sep-Oct.

12.

Clarification and confocal imaging of the nonhuman primate placental micro-anatomy.

Sargent JA, Roberts V, Gaffney JE, Frias AE.

Biotechniques. 2019 Feb;66(2):79-84. doi: 10.2144/btn-2018-0110. Epub 2018 Oct 29.

13.

Theoretical and experimental investigation of the equation of state of boron plasmas.

Zhang S, Militzer B, Gregor MC, Caspersen K, Yang LH, Gaffney J, Ogitsu T, Swift D, Lazicki A, Erskine D, London RA, Celliers PM, Nilsen J, Sterne PA, Whitley HD.

Phys Rev E. 2018 Aug;98(2-1):023205. doi: 10.1103/PhysRevE.98.023205.

PMID:
30253522
14.

Luciferin production and luciferase transcription in the bioluminescent copepod Metridia lucens.

Tessler M, Gaffney JP, Crawford JM, Trautman E, Gujarati NA, Alatalo P, Pieribone VA, Gruber DF.

PeerJ. 2018 Sep 14;6:e5506. doi: 10.7717/peerj.5506. eCollection 2018.

15.

Absolute Equation-of-State Measurement for Polystyrene from 25 to 60 Mbar Using a Spherically Converging Shock Wave.

Döppner T, Swift DC, Kritcher AL, Bachmann B, Collins GW, Chapman DA, Hawreliak J, Kraus D, Nilsen J, Rothman S, Benedict LX, Dewald E, Fratanduono DE, Gaffney JA, Glenzer SH, Hamel S, Landen OL, Lee HJ, LePape S, Ma T, MacDonald MJ, MacPhee AG, Milathianaki D, Millot M, Neumayer P, Sterne PA, Tommasini R, Falcone RW.

Phys Rev Lett. 2018 Jul 13;121(2):025001. doi: 10.1103/PhysRevLett.121.025001.

PMID:
30085737
16.

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.

Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S.

ISME J. 2019 Mar;13(3):576-587. doi: 10.1038/s41396-018-0175-0. Epub 2018 Jul 11.

17.

A theoretical model of fuselage pressure levels due to fan tones radiated from the intake of an installed turbofan aero-engine.

Gaffney J, McAlpine A, Kingan MJ.

J Acoust Soc Am. 2018 Jun;143(6):3394. doi: 10.1121/1.5038263.

PMID:
29960473
18.

Trans-Cinnamaldehyde and Eugenol Increase Acinetobacter baumannii Sensitivity to Beta-Lactam Antibiotics.

Karumathil DP, Nair MS, Gaffney J, Kollanoor-Johny A, Venkitanarayanan K.

Front Microbiol. 2018 May 23;9:1011. doi: 10.3389/fmicb.2018.01011. eCollection 2018.

19.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

20.

DNA extraction for streamlined metagenomics of diverse environmental samples.

Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R.

Biotechniques. 2017 Jun 1;62(6):290-293. doi: 10.2144/000114559.

21.

Musculoskeletal Injuries Associated With Hoverboard Use in Children.

Monteilh C, Patel P, Gaffney J.

Clin Pediatr (Phila). 2017 Sep;56(10):909-911. doi: 10.1177/0009922817706143. Epub 2017 Apr 24.

PMID:
28436285
22.

Fuselage boundary-layer refraction of fan tones radiated from an installed turbofan aero-engine.

Gaffney J, McAlpine A, Kingan MJ.

J Acoust Soc Am. 2017 Mar;141(3):1653. doi: 10.1121/1.4976965.

PMID:
28372073
23.

Prolonged Fevers in a Previously Healthy Child.

Kernizan D, Cato-Varlack J, Gaffney J.

Clin Pediatr (Phila). 2017 Dec;56(14):1372-1376. doi: 10.1177/0009922816678625. Epub 2016 Nov 24. No abstract available.

PMID:
27872363
24.

From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.

25.

Biofluorescence in Catsharks (Scyliorhinidae): Fundamental Description and Relevance for Elasmobranch Visual Ecology.

Gruber DF, Loew ER, Deheyn DD, Akkaynak D, Gaffney JP, Smith WL, Davis MP, Stern JH, Pieribone VA, Sparks JS.

Sci Rep. 2016 Apr 25;6:24751. doi: 10.1038/srep24751.

26.

Ultraviolet surprise: Efficient soft x-ray high-harmonic generation in multiply ionized plasmas.

Popmintchev D, Hernández-García C, Dollar F, Mancuso C, Pérez-Hernández JA, Chen MC, Hankla A, Gao X, Shim B, Gaeta AL, Tarazkar M, Romanov DA, Levis RJ, Gaffney JA, Foord M, Libby SB, Jaron-Becker A, Becker A, Plaja L, Murnane MM, Kapteyn HC, Popmintchev T.

Science. 2015 Dec 4;350(6265):1225-31. doi: 10.1126/science.aac9755. Epub 2015 Dec 3.

PMID:
26785483
27.

Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species.

Amato KR, Martinez-Mota R, Righini N, Raguet-Schofield M, Corcione FP, Marini E, Humphrey G, Gogul G, Gaffney J, Lovelace E, Williams L, Luong A, Dominguez-Bello MG, Stumpf RM, White B, Nelson KE, Knight R, Leigh SR.

Oecologia. 2016 Mar;180(3):717-33. doi: 10.1007/s00442-015-3507-z. Epub 2015 Nov 24.

PMID:
26597549
28.

Adaptive Evolution of Eel Fluorescent Proteins from Fatty Acid Binding Proteins Produces Bright Fluorescence in the Marine Environment.

Gruber DF, Gaffney JP, Mehr S, DeSalle R, Sparks JS, Platisa J, Pieribone VA.

PLoS One. 2015 Nov 11;10(11):e0140972. doi: 10.1371/journal.pone.0140972. eCollection 2015.

29.

Near-field sound radiation of fan tones from an installed turbofan aero-engine.

McAlpine A, Gaffney J, Kingan MJ.

J Acoust Soc Am. 2015 Sep;138(3):1313-24. doi: 10.1121/1.4928130.

PMID:
26428770
30.

Designing faculty development to support the evaluation of resident competency in the intrinsic CanMEDS roles: practical outcomes of an assessment of program director needs.

Puddester D, MacDonald CJ, Clements D, Gaffney J, Wiesenfeld L.

BMC Med Educ. 2015 Jun 5;15:100. doi: 10.1186/s12909-015-0375-5.

31.

Correlation between clinical and MRI disease activity scores in axial spondyloarthritis.

MacKay JW, Aboelmagd S, Gaffney JK.

Clin Rheumatol. 2015 Sep;34(9):1633-8. doi: 10.1007/s10067-015-2936-8. Epub 2015 Apr 19.

PMID:
25894437
32.

Is there a place for nutrition-sensitive agriculture?

Wambugu F, Obukosia S, Gaffney J, Kamanga D, Che P, Albertsen MC, Zhao ZY, Ragland L, Yeye M, Kimani E, Aba D, Gidado R, Solomon BO, Njuguna M.

Proc Nutr Soc. 2015 Nov;74(4):441-8. doi: 10.1017/S0029665115000099. Epub 2015 Apr 8. Review.

PMID:
25851095
33.

Multilevel regulation of matrix metalloproteinases in tissue homeostasis indicates their molecular specificity in vivo.

Gaffney J, Solomonov I, Zehorai E, Sagi I.

Matrix Biol. 2015 May-Jul;44-46:191-9. doi: 10.1016/j.matbio.2015.01.012. Epub 2015 Jan 24. Review.

34.

Characterization of fine mode atmospheric aerosols by Raman microscopy and diffuse reflectance FTIR.

Gaffney JS, Marley NA, Smith KJ.

J Phys Chem A. 2015 May 14;119(19):4524-32. doi: 10.1021/jp510361s. Epub 2015 Feb 3.

PMID:
25614927
35.
36.

Mapping nanoscale absorption of femtosecond laser pulses using plasma explosion imaging.

Hickstein DD, Dollar F, Ellis JL, Schnitzenbaumer KJ, Keister KE, Petrov GM, Ding C, Palm BB, Gaffney JA, Foord ME, Libby SB, Dukovic G, Jimenez JL, Kapteyn HC, Murnane MM, Xiong W.

ACS Nano. 2014 Sep 23;8(9):8810-8. doi: 10.1021/nn503199v. Epub 2014 Aug 13.

PMID:
25100104
37.

Observation and control of shock waves in individual nanoplasmas.

Hickstein DD, Dollar F, Gaffney JA, Foord ME, Petrov GM, Palm BB, Keister KE, Ellis JL, Ding C, Libby SB, Jimenez JL, Kapteyn HC, Murnane MM, Xiong W.

Phys Rev Lett. 2014 Mar 21;112(11):115004. Epub 2014 Mar 18.

38.

Long-term stability of primary rat hepatocytes in micropatterned cocultures.

Ukairo O, Kanchagar C, Moore A, Shi J, Gaffney J, Aoyama S, Rose K, Krzyzewski S, McGeehan J, Andersen ME, Khetani SR, Lecluyse EL.

J Biochem Mol Toxicol. 2013 Mar;27(3):204-12. doi: 10.1002/jbt.21469. Epub 2013 Jan 11.

PMID:
23315828
39.

Titanium mineralization in ferritin: a room temperature nonphotochemical preparation and biophysical characterization.

Amos FF, Cole KE, Meserole RL, Gaffney JP, Valentine AM.

J Biol Inorg Chem. 2013 Jan;18(1):145-52. doi: 10.1007/s00775-012-0959-z. Epub 2012 Nov 20.

PMID:
23179270
40.

Preventable childhood injuries.

Lovejoy S, Weiss JM, Epps HR, Zionts LE, Gaffney J.

J Pediatr Orthop. 2012 Oct-Nov;32(7):741-7. doi: 10.1097/BPO.0b013e31824b753c. Review.

PMID:
22955541
41.

Subsurface interactions of Fe(II) with humic acid or landfill leachate do not control subsequent iron(III) (hydr)oxide production at the surface.

Jackson A, Gaffney JW, Boult S.

Environ Sci Technol. 2012 Jul 17;46(14):7543-50. doi: 10.1021/es301084c. Epub 2012 Jul 2.

PMID:
22712619
42.

Pulmonary tumor thrombotic microangiopathy with cor pulmonale due to desmoplastic small round cell tumor.

Sadimin ET, Collier AG, Gaffney JW, Fyfe B.

J Pediatr. 2012 Apr;160(4):697-9. doi: 10.1016/j.jpeds.2011.12.010. Epub 2012 Jan 10.

PMID:
22240106
43.

Beyond bilobal: transferrin homologs having unusual domain architectures.

Gaffney JP, Valentine AM.

Biochim Biophys Acta. 2012 Mar;1820(3):212-7. doi: 10.1016/j.bbagen.2011.09.014. Epub 2011 Oct 2. Review.

PMID:
21985891
44.

The challenges of trafficking hydrolysis prone metals and ascidians as an archetype.

Gaffney JP, Valentine AM.

Dalton Trans. 2011 Jun 14;40(22):5827-35. doi: 10.1039/c1dt10092k. Epub 2011 Mar 15. Review.

PMID:
21409233
45.

Impact of fractures on school attendance.

Hyman JE, Gaffney JT, Epps HR, Matsumoto H.

J Pediatr Orthop. 2011 Mar;31(2):113-6. doi: 10.1097/BPO.0b013e3182093f8b.

PMID:
21307702
46.

Gastro-oesophageal reflux treatment for prolonged non-specific cough in children and adults.

Chang AB, Lasserson TJ, Gaffney J, Connor FL, Garske LA.

Cochrane Database Syst Rev. 2011 Jan 19;(1):CD004823. doi: 10.1002/14651858.CD004823.pub4. Review.

47.

Rural EN course filling the gap.

Gaffney J.

Qld Nurse. 2010 Feb;29(1):29. No abstract available.

PMID:
20429190
48.

Therapeutic applications of hyaluronan.

Gaffney J, Matou-Nasri S, Grau-Olivares M, Slevin M.

Mol Biosyst. 2010 Mar;6(3):437-43. doi: 10.1039/b910552m. Epub 2009 Nov 12. Review.

PMID:
20174672
49.

Hydroxyl radical substitution in halogenated carbonyls: oxalic acid formation.

Christiansen CJ, Dalal SS, Francisco JS, Mebel AM, Gaffney JS.

J Phys Chem A. 2010 Mar 4;114(8):2806-20. doi: 10.1021/jp9045116.

PMID:
20131850
50.

Use of the Gartland classification system for treatment of pediatric supracondylar humerus fractures.

Mallo G, Stanat SJ, Gaffney J.

Orthopedics. 2010 Jan;33(1):19. doi: 10.3928/01477447-20091124-08.

PMID:
20055347

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