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Items: 1 to 50 of 292

1.

From one pattern into another: analysis of Turing patterns in heterogeneous domains via WKBJ.

Krause AL, Klika V, Woolley TE, Gaffney EA.

J R Soc Interface. 2020 Jan;17(162):20190621. doi: 10.1098/rsif.2019.0621. Epub 2020 Jan 15.

PMID:
31937231
2.

Pattern formation in reaction-diffusion systems with piecewise kinetic modulation: An example study of heterogeneous kinetics.

Kozák M, Gaffney EA, Klika V.

Phys Rev E. 2019 Oct;100(4-1):042220. doi: 10.1103/PhysRevE.100.042220.

PMID:
31771002
3.

Lumbar muscle stiffness is different in individuals with low back pain than asymptomatic controls and is associated with pain and disability, but not common physical examination findings.

Koppenhaver S, Gaffney E, Oates A, Eberle L, Young B, Hebert J, Proulx L, Shinohara M.

Musculoskelet Sci Pract. 2019 Nov 1;45:102078. doi: 10.1016/j.msksp.2019.102078. [Epub ahead of print]

PMID:
31704551
4.

Combining Mathematical Models With Experimentation to Drive Novel Mechanistic Insights Into Macrophage Function.

Jansen JE, Gaffney EA, Wagg J, Coles MC.

Front Immunol. 2019 Jun 6;10:1283. doi: 10.3389/fimmu.2019.01283. eCollection 2019.

5.

Tuning purple bacteria salt-tolerance for photobioelectrochemical systems in saline environments.

Grattieri M, Beaver K, Gaffney EM, Minteer SD.

Faraday Discuss. 2019 Jul 4;215(0):15-25. doi: 10.1039/c8fd00160j.

PMID:
30942210
6.

The relative risk to the femoral nerve as a function of patient positioning: potential implications for trigger point dry needling of the iliacus muscle.

Ball AM, Finnegan M, Koppenhaver S, Freres W, Dommerholt J, Mayoral Del Moral O, Bron C, Moore R, Ball EE, Gaffney EE.

J Man Manip Ther. 2019 Jul;27(3):162-171. doi: 10.1080/10669817.2019.1568699. Epub 2019 Feb 20.

PMID:
30935326
7.

Goal Attainment Scaling Made Easy With an App: GOALed.

Gaffney E, Gaffney K, Bartleson L, Dodds C.

Pediatr Phys Ther. 2019 Apr;31(2):225-230. doi: 10.1097/PEP.0000000000000602.

PMID:
30907841
8.

Flagellar ultrastructure suppresses buckling instabilities and enables mammalian sperm navigation in high-viscosity media.

Gadêlha H, Gaffney EA.

J R Soc Interface. 2019 Mar 29;16(152):20180668. doi: 10.1098/rsif.2018.0668.

PMID:
30890052
9.

Feather arrays are patterned by interacting signalling and cell density waves.

Ho WKW, Freem L, Zhao D, Painter KJ, Woolley TE, Gaffney EA, McGrew MJ, Tzika A, Milinkovitch MC, Schneider P, Drusko A, Matthäus F, Glover JD, Wells KL, Johansson JA, Davey MG, Sang HM, Clinton M, Headon DJ.

PLoS Biol. 2019 Feb 21;17(2):e3000132. doi: 10.1371/journal.pbio.3000132. eCollection 2019 Feb.

10.

The combined impact of tissue heterogeneity and fixed charge for models of cartilage: the one-dimensional biphasic swelling model revisited.

Klika V, Whiteley JP, Brown CP, Gaffney EA.

Biomech Model Mechanobiol. 2019 Aug;18(4):953-968. doi: 10.1007/s10237-019-01123-7. Epub 2019 Feb 6.

PMID:
30729390
11.

Response of monoflagellate pullers to a shearing flow: A simulation study of microswimmer guidance.

Walker BJ, Ishimoto K, Wheeler RJ, Gaffney EA.

Phys Rev E. 2018 Dec 26;98(6):063111.

12.

Integrated method for quantitative morphometry and oxygen transport modeling in striated muscle.

Al-Shammari AA, Kissane RWP, Holbek S, Mackey AL, Andersen TR, Gaffney EA, Kjaer M, Egginton S.

J Appl Physiol (1985). 2019 Mar 1;126(3):544-557. doi: 10.1152/japplphysiol.00170.2018. Epub 2018 Dec 6.

13.

Boundary behaviours of Leishmania mexicana: A hydrodynamic simulation study.

Walker BJ, Wheeler RJ, Ishimoto K, Gaffney EA.

J Theor Biol. 2019 Feb 7;462:311-320. doi: 10.1016/j.jtbi.2018.11.016. Epub 2018 Nov 20.

14.

Electrometabolic Pathways: Recent Developments in Bioelectrocatalytic Cascades.

Hickey DP, Gaffney EM, Minteer SD.

Top Curr Chem (Cham). 2018 Nov 3;376(6):43. doi: 10.1007/s41061-018-0221-4. Review.

PMID:
30390159
15.

Hydrodynamic Clustering of Human Sperm in Viscoelastic Fluids.

Ishimoto K, Gaffney EA.

Sci Rep. 2018 Oct 22;8(1):15600. doi: 10.1038/s41598-018-33584-8.

16.

Applications of mechanistic modelling to clinical and experimental immunology: an emerging technology to accelerate immunotherapeutic discovery and development.

Brown LV, Gaffney EA, Wagg J, Coles MC.

Clin Exp Immunol. 2018 Sep;193(3):284-292. doi: 10.1111/cei.13182. Review.

17.

Factors that drive the increasing use of FFPE tissue in basic and translational cancer research.

Gaffney EF, Riegman PH, Grizzle WE, Watson PH.

Biotech Histochem. 2018;93(5):373-386. doi: 10.1080/10520295.2018.1446101. Epub 2018 Aug 16. Review.

PMID:
30113239
18.

Osmotic and electroosmotic fluid transport across the retinal pigment epithelium: A mathematical model.

Dvoriashyna M, Foss AJE, Gaffney EA, Jensen OE, Repetto R.

J Theor Biol. 2018 Nov 7;456:233-248. doi: 10.1016/j.jtbi.2018.08.009. Epub 2018 Aug 7.

PMID:
30096403
19.

Heterogeneity induces spatiotemporal oscillations in reaction-diffusion systems.

Krause AL, Klika V, Woolley TE, Gaffney EA.

Phys Rev E. 2018 May;97(5-1):052206. doi: 10.1103/PhysRevE.97.052206.

PMID:
29906857
20.

Theoretical Insights into the Retinal Dynamics of Vascular Endothelial Growth Factor in Patients Treated with Ranibizumab, Based on an Ocular Pharmacokinetic/Pharmacodynamic Model.

Hutton-Smith LA, Gaffney EA, Byrne HM, Caruso A, Maini PK, Mazer NA.

Mol Pharm. 2018 Jul 2;15(7):2770-2784. doi: 10.1021/acs.molpharmaceut.8b00280. Epub 2018 May 29.

PMID:
29734810
21.

Predictive Mathematical Models for the Spread and Treatment of Hyperoxia-induced Photoreceptor Degeneration in Retinitis Pigmentosa.

Roberts PA, Gaffney EA, Whiteley JP, Luthert PJ, Foss AJE, Byrne HM.

Invest Ophthalmol Vis Sci. 2018 Mar 1;59(3):1238-1249. doi: 10.1167/iovs.17-23177.

PMID:
29625444
22.

Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment.

Woolley TE, Belmonte-Beitia J, Calvo GF, Hopewell JW, Gaffney EA, Jones B.

Int J Radiat Biol. 2018 Jun;94(6):515-531. doi: 10.1080/09553002.2018.1430911. Epub 2018 Apr 23.

PMID:
29620431
23.

An in silico model of cytotoxic T-lymphocyte activation in the lymph node following short peptide vaccination.

Brown LV, Gaffney EA, Wagg J, Coles MC.

J R Soc Interface. 2018 Mar;15(140). pii: 20180041. doi: 10.1098/rsif.2018.0041.

24.

Basal Tear Osmolarity as a metric to estimate body hydration and dry eye severity.

Willshire C, Bron AJ, Gaffney EA, Pearce EI.

Prog Retin Eye Res. 2018 May;64:56-64. doi: 10.1016/j.preteyeres.2018.02.001. Epub 2018 Feb 21. Review.

PMID:
29476817
25.

Human sperm swimming in a high viscosity mucus analogue.

Ishimoto K, Gadêlha H, Gaffney EA, Smith DJ, Kirkman-Brown J.

J Theor Biol. 2018 Jun 7;446:1-10. doi: 10.1016/j.jtbi.2018.02.013. Epub 2018 Feb 17.

26.

Random blebbing motion: A simple model linking cell structural properties to migration characteristics.

Woolley TE, Gaffney EA, Goriely A.

Phys Rev E. 2017 Jul;96(1-1):012409. doi: 10.1103/PhysRevE.96.012409. Epub 2017 Jul 18.

PMID:
29347096
27.

Effects of White Noise Achilles Tendon Vibration on Quiet Standing and Active Postural Positioning.

Sacco CC, Gaffney EM, Dean JC.

J Appl Biomech. 2018 Apr 1;34(2):151-158. doi: 10.1123/jab.2016-0359. Epub 2018 Mar 20.

PMID:
29139321
28.

Ocular Pharmacokinetics of Therapeutic Antibodies Given by Intravitreal Injection: Estimation of Retinal Permeabilities Using a 3-Compartment Semi-Mechanistic Model.

Hutton-Smith LA, Gaffney EA, Byrne HM, Maini PK, Gadkar K, Mazer NA.

Mol Pharm. 2017 Aug 7;14(8):2690-2696. doi: 10.1021/acs.molpharmaceut.7b00164. Epub 2017 Jul 3.

PMID:
28631484
29.

Mathematical models of retinitis pigmentosa: The oxygen toxicity hypothesis.

Roberts PA, Gaffney EA, Luthert PJ, Foss AJE, Byrne HM.

J Theor Biol. 2017 Jul 21;425:53-71. doi: 10.1016/j.jtbi.2017.05.006. Epub 2017 May 6.

PMID:
28483568
30.

History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability.

Klika V, Gaffney EA.

Proc Math Phys Eng Sci. 2017 Mar;473(2199):20160744. doi: 10.1098/rspa.2016.0744. Epub 2017 Mar 15.

31.

Coarse-Graining the Fluid Flow around a Human Sperm.

Ishimoto K, Gadêlha H, Gaffney EA, Smith DJ, Kirkman-Brown J.

Phys Rev Lett. 2017 Mar 24;118(12):124501. doi: 10.1103/PhysRevLett.118.124501. Epub 2017 Mar 23.

PMID:
28388208
32.

Reply to Baveye and Darnault: Useful models are simple and extendable.

Coyte KZ, Tabuteau H, Gaffney EA, Foster KR, Durham WM.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2804-E2805. doi: 10.1073/pnas.1702303114. Epub 2017 Mar 24. No abstract available.

33.

Mechanical Cell-Cell Communication in Fibrous Networks: The Importance of Network Geometry.

Humphries DL, Grogan JA, Gaffney EA.

Bull Math Biol. 2017 Mar;79(3):498-524. doi: 10.1007/s11538-016-0242-5. Epub 2017 Jan 27.

34.

Microbial competition in porous environments can select against rapid biofilm growth.

Coyte KZ, Tabuteau H, Gaffney EA, Foster KR, Durham WM.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):E161-E170. doi: 10.1073/pnas.1525228113. Epub 2016 Dec 22.

35.

Effect of crosslinking in cartilage-like collagen microstructures.

Chen YC, Chen M, Gaffney EA, Brown CP.

J Mech Behav Biomed Mater. 2017 Feb;66:138-143. doi: 10.1016/j.jmbbm.2016.10.006. Epub 2016 Oct 15.

PMID:
27866057
36.

Modeling Longitudinal Preclinical Tumor Size Data to Identify Transient Dynamics in Tumor Response to Antiangiogenic Drugs.

Hutchinson LG, Mueller HJ, Gaffney EA, Maini PK, Wagg J, Phipps A, Boetsch C, Byrne HM, Ribba B.

CPT Pharmacometrics Syst Pharmacol. 2016 Nov;5(11):636-645. doi: 10.1002/psp4.12142. Epub 2016 Nov 14.

37.
38.

An overview of multiphase cartilage mechanical modelling and its role in understanding function and pathology.

Klika V, Gaffney EA, Chen YC, Brown CP.

J Mech Behav Biomed Mater. 2016 Sep;62:139-157. doi: 10.1016/j.jmbbm.2016.04.032. Epub 2016 May 11. Review.

39.

Mathematical and computational models of the retina in health, development and disease.

Roberts PA, Gaffney EA, Luthert PJ, Foss AJE, Byrne HM.

Prog Retin Eye Res. 2016 Jul;53:48-69. doi: 10.1016/j.preteyeres.2016.04.001. Epub 2016 Apr 7. Review.

PMID:
27063291
40.

Vascular phenotype identification and anti-angiogenic treatment recommendation: A pseudo-multiscale mathematical model of angiogenesis.

Hutchinson LG, Gaffney EA, Maini PK, Wagg J, Phipps A, Byrne HM.

J Theor Biol. 2016 Jun 7;398:162-80. doi: 10.1016/j.jtbi.2016.03.002. Epub 2016 Mar 14.

PMID:
26987523
41.

Hydrodynamic analysis of flagellated bacteria swimming in corners of rectangular channels.

Shum H, Gaffney EA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):063016. doi: 10.1103/PhysRevE.92.063016. Epub 2015 Dec 16.

PMID:
26764813
42.

Fock space, symbolic algebra, and analytical solutions for small stochastic systems.

Santos FA, Gadêlha H, Gaffney EA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062714. doi: 10.1103/PhysRevE.92.062714. Epub 2015 Dec 28.

PMID:
26764734
43.

A Mechanistic Model of the Intravitreal Pharmacokinetics of Large Molecules and the Pharmacodynamic Suppression of Ocular Vascular Endothelial Growth Factor Levels by Ranibizumab in Patients with Neovascular Age-Related Macular Degeneration.

Hutton-Smith LA, Gaffney EA, Byrne HM, Maini PK, Schwab D, Mazer NA.

Mol Pharm. 2016 Sep 6;13(9):2941-50. doi: 10.1021/acs.molpharmaceut.5b00849. Epub 2016 Jan 14.

PMID:
26726925
44.

Membrane shrinkage and cortex remodelling are predicted to work in harmony to retract blebs.

Woolley TE, Gaffney EA, Goriely A.

R Soc Open Sci. 2015 Jul 29;2(7):150184. doi: 10.1098/rsos.150184. eCollection 2015 Jul.

45.

A simulation study of sperm motility hydrodynamics near fish eggs and spheres.

Ishimoto K, Cosson J, Gaffney EA.

J Theor Biol. 2016 Jan 21;389:187-97. doi: 10.1016/j.jtbi.2015.10.013. Epub 2015 Nov 2.

PMID:
26542943
46.

Retinal oxygen distribution and the role of neuroglobin.

Roberts PA, Gaffney EA, Luthert PJ, Foss AJ, Byrne HM.

J Math Biol. 2016 Jul;73(1):1-38. doi: 10.1007/s00285-015-0931-y. Epub 2015 Sep 14.

PMID:
26370669
47.

Glyph-Based Video Visualization for Semen Analysis.

Duffy B, Thiyagalingam J, Walton S, Smith DJ, Trefethen A, Kirkman-Brown JC, Gaffney EA, Min Chen.

IEEE Trans Vis Comput Graph. 2015 Aug;21(8):980-93. doi: 10.1109/TVCG.2013.265.

PMID:
26357260
48.

The mechanics of hyperactivation in adhered human sperm.

Ooi EH, Smith DJ, Gadêlha H, Gaffney EA, Kirkman-Brown J.

R Soc Open Sci. 2014 Oct 1;1(2):140230. doi: 10.1098/rsos.140230. eCollection 2014 Oct.

49.

Maternal hypoxia decreases capillary supply and increases metabolic inefficiency leading to divergence in myocardial oxygen supply and demand.

Hauton D, Al-Shammari A, Gaffney EA, Egginton S.

PLoS One. 2015 Jun 1;10(6):e0127424. doi: 10.1371/journal.pone.0127424. eCollection 2015.

50.

Case Study: Diffuse Large B-Cell Lymphoma Arising in Ovarian Mature Cystic Teratoma.

Maguire A, Castriciano G, Walker J, Molloy K, Quinn F, Osman N, Vandenberghe E, Jeffers M, Gaffney E, Flavin R.

Int J Gynecol Pathol. 2015 Sep;34(5):459-64. doi: 10.1097/PGP.0000000000000172.

PMID:
25996637

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